4QOPA

Structure of bacillus pumilus catalase with hydroquinone bound.
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 151
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qopA00
3PQ7A 4AULA 1QF7A 3ZJ5A 1SY7A 4CABA 1P80A 3VU3A 4QOPA 4ENQA 2ISAA 1H7KA 4QOOA 1GGHA 4B5KA 1GGJA 4ENWA 1GG9A 4ENTA 1M7SA 4QOMA 4QOQA 3TTUA 4BFLA 4AUEA 1GGEA 3TTXA 4ENSA 4QONA 1GWHA 2IQFA 4AUNA 1H6NA 4E37A 1P7ZA 1HBZA 4BIMA 2XF2A 1SI8A 3HB6A 4QORA 1A4EA 2J2MA 4B7AA 1NM0A 1CF9A 3PQ5A 3PQ3A 1P7YA 2CAHA 1P81A 2XQ1A 5BV2P 4AJ9A 1MQFA 3PQ6A 1E93A 3P9SA 4B40A 1U5UA 4B2YA 2CAGA 3PQ4A 1QWLA 3PQ2A 4ENPA 1M85A 3TTVA 1IPHA 2A9EA 1GWFA 3TTTA 1GGKA 3DY5A 4ENVA 3P9PA 3P9RA 3PQ8A 1GGFA 3TTWA 3P9QA 1QWSA 4QOLA 4AUMA 1QWMA 1GWEA 4B31A 4ENUA 3ZJ4A 3EJ6A 4ENRA 2IUFA 1F4JA
chains in the Genus database with same CATH superfamily
3PQ7A 3E4YA 4AULA 1TH3A 1QF7A 3ZJ5A 4B7HA 1SY7A 4CABA 1P80A 3VU3A 4QOPA 4ENQA 2ISAA 1H7KA 4QOOA 1GGHA 4B5KA 1GGJA 4ENWA 1GG9A 4ENTA 3E4WA 1M7SA 4QOMA 4B7GA 5GKNA 1DGFA 4QOQA 3TTUA 4BFLA 4AUEA 1GGEA 3TTXA 1TGUA 4ENSA 4QONA 1GWHA 2IQFA 4AUNA 1H6NA 4E37A 1P7ZA 1HBZA 1DGBA 4BIMA 2XF2A 1SI8A 3RGSA 3HB6A 4QORA 3RGPA 1A4EA 2J2MA 1TH2A 7CATA 4B7AA 1NM0A 1CF9A 3PQ5A 3PQ3A 1P7YA 3RE8A 2CAHA 1P81A 2XQ1A 5BV2P 4AJ9A 1MQFA 3PQ6A 1E93A 3P9SA 4B40A 1DGHB 1U5UA 4B2YA 2CAGA 3PQ4A 1QWLA 3PQ2A 4B7FA 4ENPA 1M85A 3NWLA 1TH4A 3TTVA 1IPHA 2A9EA 4BLCA 1GWFA 3TTTA 1GGKA 3DY5A 4ENVA 3P9PA 3P9RA 3PQ8A 8CATA 1GGFA 1DGGA 3TTWA 1QQWA 1DGHA 3P9QA 1QWSA 4QOLA 4AUMA 1QWMA 1GWEA 4B31A 4ENUA 3ZJ4A 3EJ6A 4ENRA 2IUFA 1F4JA 3J7BA
chains in the Genus database with same CATH topology
3PQ7A 4AULA 1QF7A 3ZJ5A 1SY7A 4CABA 1P80A 3VU3A 4QOPA 4ENQA 2ISAA 1H7KA 4QOOA 1GGHA 4B5KA 1GGJA 4ENWA 1GG9A 4ENTA 1M7SA 4QOMA 4QOQA 3TTUA 4BFLA 4AUEA 1GGEA 3TTXA 4ENSA 4QONA 1GWHA 2IQFA 4AUNA 1H6NA 4E37A 1P7ZA 1HBZA 4BIMA 2XF2A 1SI8A 3HB6A 4QORA 1A4EA 2J2MA 4B7AA 1NM0A 1CF9A 3PQ5A 3PQ3A 1P7YA 2CAHA 1P81A 2XQ1A 5BV2P 4AJ9A 1MQFA 3PQ6A 1E93A 3P9SA 4B40A 1U5UA 4B2YA 2CAGA 3PQ4A 1QWLA 3PQ2A 4ENPA 1M85A 3TTVA 1IPHA 2A9EA 1GWFA 3TTTA 1GGKA 3DY5A 4ENVA 3P9PA 3P9RA 3PQ8A 1GGFA 3TTWA 3P9QA 1QWSA 4QOLA 4AUMA 1QWMA 1GWEA 4B31A 4ENUA 3ZJ4A 3EJ6A 4ENRA 2IUFA 1F4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PQ7 A;  4AUL A;  1QF7 A;  3ZJ5 A;  1SY7 A;  4CAB A;  1P80 A;  3VU3 A;  4QOP A;  4ENQ A;  2ISA A;  1H7K A;  4QOO A;  1GGH A;  4B5K A;  1GGJ A;  4ENW A;  1GG9 A;  4ENT A;  1M7S A;  4QOM A;  4QOQ A;  3TTU A;  4BFL A;  4AUE A;  1GGE A;  3TTX A;  4ENS A;  4QON A;  1GWH A;  2IQF A;  4AUN A;  1H6N A;  4E37 A;  1P7Z A;  1HBZ A;  4BIM A;  2XF2 A;  1SI8 A;  3HB6 A;  4QOR A;  1A4E A;  2J2M A;  4B7A A;  1NM0 A;  1CF9 A;  3PQ5 A;  3PQ3 A;  1P7Y A;  2CAH A;  1P81 A;  2XQ1 A;  5BV2 P;  4AJ9 A;  1MQF A;  3PQ6 A;  1E93 A;  3P9S A;  4B40 A;  1U5U A;  4B2Y A;  2CAG A;  3PQ4 A;  1QWL A;  3PQ2 A;  4ENP A;  1M85 A;  3TTV A;  1IPH A;  2A9E A;  1GWF A;  3TTT A;  1GGK A;  3DY5 A;  4ENV A;  3P9P A;  3P9R A;  3PQ8 A;  1GGF A;  3TTW A;  3P9Q A;  1QWS A;  4QOL A;  4AUM A;  1QWM A;  1GWE A;  4B31 A;  4ENU A;  3ZJ4 A;  3EJ6 A;  4ENR A;  2IUF A;  1F4J A; 
#chains in the Genus database with same CATH topology
 3PQ7 A;  3E4Y A;  4AUL A;  1TH3 A;  1QF7 A;  3ZJ5 A;  4B7H A;  1SY7 A;  4CAB A;  1P80 A;  3VU3 A;  4QOP A;  4ENQ A;  2ISA A;  1H7K A;  4QOO A;  1GGH A;  4B5K A;  1GGJ A;  4ENW A;  1GG9 A;  4ENT A;  3E4W A;  1M7S A;  4QOM A;  4B7G A;  5GKN A;  1DGF A;  4QOQ A;  3TTU A;  4BFL A;  4AUE A;  1GGE A;  3TTX A;  1TGU A;  4ENS A;  4QON A;  1GWH A;  2IQF A;  4AUN A;  1H6N A;  4E37 A;  1P7Z A;  1HBZ A;  1DGB A;  4BIM A;  2XF2 A;  1SI8 A;  3RGS A;  3HB6 A;  4QOR A;  3RGP A;  1A4E A;  2J2M A;  1TH2 A;  7CAT A;  4B7A A;  1NM0 A;  1CF9 A;  3PQ5 A;  3PQ3 A;  1P7Y A;  3RE8 A;  2CAH A;  1P81 A;  2XQ1 A;  5BV2 P;  4AJ9 A;  1MQF A;  3PQ6 A;  1E93 A;  3P9S A;  4B40 A;  1DGH B;  1U5U A;  4B2Y A;  2CAG A;  3PQ4 A;  1QWL A;  3PQ2 A;  4B7F A;  4ENP A;  1M85 A;  3NWL A;  1TH4 A;  3TTV A;  1IPH A;  2A9E A;  4BLC A;  1GWF A;  3TTT A;  1GGK A;  3DY5 A;  4ENV A;  3P9P A;  3P9R A;  3PQ8 A;  8CAT A;  1GGF A;  1DGG A;  3TTW A;  1QQW A;  1DGH A;  3P9Q A;  1QWS A;  4QOL A;  4AUM A;  1QWM A;  1GWE A;  4B31 A;  4ENU A;  3ZJ4 A;  3EJ6 A;  4ENR A;  2IUF A;  1F4J A;  3J7B A; 
#chains in the Genus database with same CATH homology
 3PQ7 A;  4AUL A;  1QF7 A;  3ZJ5 A;  1SY7 A;  4CAB A;  1P80 A;  3VU3 A;  4QOP A;  4ENQ A;  2ISA A;  1H7K A;  4QOO A;  1GGH A;  4B5K A;  1GGJ A;  4ENW A;  1GG9 A;  4ENT A;  1M7S A;  4QOM A;  4QOQ A;  3TTU A;  4BFL A;  4AUE A;  1GGE A;  3TTX A;  4ENS A;  4QON A;  1GWH A;  2IQF A;  4AUN A;  1H6N A;  4E37 A;  1P7Z A;  1HBZ A;  4BIM A;  2XF2 A;  1SI8 A;  3HB6 A;  4QOR A;  1A4E A;  2J2M A;  4B7A A;  1NM0 A;  1CF9 A;  3PQ5 A;  3PQ3 A;  1P7Y A;  2CAH A;  1P81 A;  2XQ1 A;  5BV2 P;  4AJ9 A;  1MQF A;  3PQ6 A;  1E93 A;  3P9S A;  4B40 A;  1U5U A;  4B2Y A;  2CAG A;  3PQ4 A;  1QWL A;  3PQ2 A;  4ENP A;  1M85 A;  3TTV A;  1IPH A;  2A9E A;  1GWF A;  3TTT A;  1GGK A;  3DY5 A;  4ENV A;  3P9P A;  3P9R A;  3PQ8 A;  1GGF A;  3TTW A;  3P9Q A;  1QWS A;  4QOL A;  4AUM A;  1QWM A;  1GWE A;  4B31 A;  4ENU A;  3ZJ4 A;  3EJ6 A;  4ENR A;  2IUF A;  1F4J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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