4QORA

Structure of bacillus pumilus catalase with chlorophenol bound.
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
b'HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
molecule tags Oxidoreductase
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qorA00
4BIMA 3PQ4A 4QOLA 3PQ3A 4QOPA 1NM0A 3HB6A 4ENQA 1GGKA 4QORA 4BFLA 4B5KA 1SY7A 1GWFA 4AUNA 4AJ9A 3VU3A 1GG9A 1GGHA 1E93A 3PQ6A 1F4JA 1P81A 2ISAA 1GWEA 4ENUA 3PQ7A 1QWSA 4ENWA 2XF2A 1P80A 4AUMA 2IUFA 3P9RA 3TTTA 1H6NA 3TTXA 1GGJA 4ENVA 4ENSA 4ENTA 1HBZA 2XQ1A 4AULA 1M85A 1IPHA 1SI8A 1MQFA 2J2MA 4B31A 1QWMA 3DY5A 1GWHA 3PQ8A 1QF7A 3PQ5A 4QONA 4QOOA 4B7AA 4ENRA 3TTUA 3P9SA 3TTVA 2CAHA 4B2YA 3ZJ4A 1GGFA 3TTWA 4CABA 3ZJ5A 3EJ6A 1H7KA 4E37A 2A9EA 3P9PA 3PQ2A 4ENPA 1M7SA 2IQFA 4QOQA 4AUEA 1P7ZA 1P7YA 1A4EA 4B40A 4QOMA 3P9QA 1GGEA 2CAGA 1QWLA 5BV2P 1CF9A 1U5UA
chains in the Genus database with same CATH superfamily
4BIMA 3PQ4A 3NWLA 4QOLA 3PQ3A 4QOPA 1NM0A 3HB6A 1DGBA 4ENQA 1GGKA 4QORA 4BFLA 4B5KA 1SY7A 1GWFA 4AUNA 4AJ9A 3VU3A 1GG9A 1GGHA 1E93A 3PQ6A 1F4JA 1P81A 1TH4A 1TH3A 3RGSA 2ISAA 1GWEA 8CATA 4ENUA 3PQ7A 1QWSA 7CATA 4ENWA 2XF2A 1P80A 4AUMA 2IUFA 3P9RA 3TTTA 1H6NA 3TTXA 1GGJA 4ENVA 4BLCA 4ENSA 4ENTA 1HBZA 2XQ1A 4AULA 1M85A 1DGHB 1IPHA 4B7GA 1SI8A 1MQFA 4B7HA 2J2MA 4B31A 1QWMA 3E4YA 5GKNA 3DY5A 1GWHA 3PQ8A 1QF7A 3PQ5A 4QONA 4QOOA 4B7AA 4ENRA 3TTUA 3P9SA 3TTVA 2CAHA 4B2YA 3ZJ4A 3E4WA 1TGUA 1GGFA 1DGHA 3TTWA 4CABA 3ZJ5A 3EJ6A 1H7KA 4E37A 2A9EA 3P9PA 3PQ2A 4ENPA 1M7SA 1TH2A 2IQFA 4QOQA 4AUEA 1QQWA 1P7ZA 1P7YA 1DGGA 1A4EA 4B40A 1DGFA 4QOMA 3P9QA 1GGEA 4B7FA 2CAGA 3RE8A 1QWLA 5BV2P 3RGPA 3J7BA 1CF9A 1U5UA
chains in the Genus database with same CATH topology
4BIMA 3PQ4A 4QOLA 3PQ3A 4QOPA 1NM0A 3HB6A 4ENQA 1GGKA 4QORA 4BFLA 4B5KA 1SY7A 1GWFA 4AUNA 4AJ9A 3VU3A 1GG9A 1GGHA 1E93A 3PQ6A 1F4JA 1P81A 2ISAA 1GWEA 4ENUA 3PQ7A 1QWSA 4ENWA 2XF2A 1P80A 4AUMA 2IUFA 3P9RA 3TTTA 1H6NA 3TTXA 1GGJA 4ENVA 4ENSA 4ENTA 1HBZA 2XQ1A 4AULA 1M85A 1IPHA 1SI8A 1MQFA 2J2MA 4B31A 1QWMA 3DY5A 1GWHA 3PQ8A 1QF7A 3PQ5A 4QONA 4QOOA 4B7AA 4ENRA 3TTUA 3P9SA 3TTVA 2CAHA 4B2YA 3ZJ4A 1GGFA 3TTWA 4CABA 3ZJ5A 3EJ6A 1H7KA 4E37A 2A9EA 3P9PA 3PQ2A 4ENPA 1M7SA 2IQFA 4QOQA 4AUEA 1P7ZA 1P7YA 1A4EA 4B40A 4QOMA 3P9QA 1GGEA 2CAGA 1QWLA 5BV2P 1CF9A 1U5UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BIM A;  3PQ4 A;  4QOL A;  3PQ3 A;  4QOP A;  1NM0 A;  3HB6 A;  4ENQ A;  1GGK A;  4QOR A;  4BFL A;  4B5K A;  1SY7 A;  1GWF A;  4AUN A;  4AJ9 A;  3VU3 A;  1GG9 A;  1GGH A;  1E93 A;  3PQ6 A;  1F4J A;  1P81 A;  2ISA A;  1GWE A;  4ENU A;  3PQ7 A;  1QWS A;  4ENW A;  2XF2 A;  1P80 A;  4AUM A;  2IUF A;  3P9R A;  3TTT A;  1H6N A;  3TTX A;  1GGJ A;  4ENV A;  4ENS A;  4ENT A;  1HBZ A;  2XQ1 A;  4AUL A;  1M85 A;  1IPH A;  1SI8 A;  1MQF A;  2J2M A;  4B31 A;  1QWM A;  3DY5 A;  1GWH A;  3PQ8 A;  1QF7 A;  3PQ5 A;  4QON A;  4QOO A;  4B7A A;  4ENR A;  3TTU A;  3P9S A;  3TTV A;  2CAH A;  4B2Y A;  3ZJ4 A;  1GGF A;  3TTW A;  4CAB A;  3ZJ5 A;  3EJ6 A;  1H7K A;  4E37 A;  2A9E A;  3P9P A;  3PQ2 A;  4ENP A;  1M7S A;  2IQF A;  4QOQ A;  4AUE A;  1P7Z A;  1P7Y A;  1A4E A;  4B40 A;  4QOM A;  3P9Q A;  1GGE A;  2CAG A;  1QWL A;  5BV2 P;  1CF9 A;  1U5U A; 
#chains in the Genus database with same CATH topology
 4BIM A;  3PQ4 A;  3NWL A;  4QOL A;  3PQ3 A;  4QOP A;  1NM0 A;  3HB6 A;  1DGB A;  4ENQ A;  1GGK A;  4QOR A;  4BFL A;  4B5K A;  1SY7 A;  1GWF A;  4AUN A;  4AJ9 A;  3VU3 A;  1GG9 A;  1GGH A;  1E93 A;  3PQ6 A;  1F4J A;  1P81 A;  1TH4 A;  1TH3 A;  3RGS A;  2ISA A;  1GWE A;  8CAT A;  4ENU A;  3PQ7 A;  1QWS A;  7CAT A;  4ENW A;  2XF2 A;  1P80 A;  4AUM A;  2IUF A;  3P9R A;  3TTT A;  1H6N A;  3TTX A;  1GGJ A;  4ENV A;  4BLC A;  4ENS A;  4ENT A;  1HBZ A;  2XQ1 A;  4AUL A;  1M85 A;  1DGH B;  1IPH A;  4B7G A;  1SI8 A;  1MQF A;  4B7H A;  2J2M A;  4B31 A;  1QWM A;  3E4Y A;  5GKN A;  3DY5 A;  1GWH A;  3PQ8 A;  1QF7 A;  3PQ5 A;  4QON A;  4QOO A;  4B7A A;  4ENR A;  3TTU A;  3P9S A;  3TTV A;  2CAH A;  4B2Y A;  3ZJ4 A;  3E4W A;  1TGU A;  1GGF A;  1DGH A;  3TTW A;  4CAB A;  3ZJ5 A;  3EJ6 A;  1H7K A;  4E37 A;  2A9E A;  3P9P A;  3PQ2 A;  4ENP A;  1M7S A;  1TH2 A;  2IQF A;  4QOQ A;  4AUE A;  1QQW A;  1P7Z A;  1P7Y A;  1DGG A;  1A4E A;  4B40 A;  1DGF A;  4QOM A;  3P9Q A;  1GGE A;  4B7F A;  2CAG A;  3RE8 A;  1QWL A;  5BV2 P;  3RGP A;  3J7B A;  1CF9 A;  1U5U A; 
#chains in the Genus database with same CATH homology
 4BIM A;  3PQ4 A;  4QOL A;  3PQ3 A;  4QOP A;  1NM0 A;  3HB6 A;  4ENQ A;  1GGK A;  4QOR A;  4BFL A;  4B5K A;  1SY7 A;  1GWF A;  4AUN A;  4AJ9 A;  3VU3 A;  1GG9 A;  1GGH A;  1E93 A;  3PQ6 A;  1F4J A;  1P81 A;  2ISA A;  1GWE A;  4ENU A;  3PQ7 A;  1QWS A;  4ENW A;  2XF2 A;  1P80 A;  4AUM A;  2IUF A;  3P9R A;  3TTT A;  1H6N A;  3TTX A;  1GGJ A;  4ENV A;  4ENS A;  4ENT A;  1HBZ A;  2XQ1 A;  4AUL A;  1M85 A;  1IPH A;  1SI8 A;  1MQF A;  2J2M A;  4B31 A;  1QWM A;  3DY5 A;  1GWH A;  3PQ8 A;  1QF7 A;  3PQ5 A;  4QON A;  4QOO A;  4B7A A;  4ENR A;  3TTU A;  3P9S A;  3TTV A;  2CAH A;  4B2Y A;  3ZJ4 A;  1GGF A;  3TTW A;  4CAB A;  3ZJ5 A;  3EJ6 A;  1H7K A;  4E37 A;  2A9E A;  3P9P A;  3PQ2 A;  4ENP A;  1M7S A;  2IQF A;  4QOQ A;  4AUE A;  1P7Z A;  1P7Y A;  1A4E A;  4B40 A;  4QOM A;  3P9Q A;  1GGE A;  2CAG A;  1QWL A;  5BV2 P;  1CF9 A;  1U5U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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