4QORA

Structure of bacillus pumilus catalase with chlorophenol bound.
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
molecule tags Oxidoreductase
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qorA00
3TTWA 4ENWA 3PQ5A 4ENQA 4AUNA 1GGFA 4AUEA 1QWLA 1SY7A 3VU3A 1P7ZA 3ZJ5A 4CABA 1M7SA 3EJ6A 3TTTA 1QWSA 4ENTA 4AJ9A 4ENUA 2XF2A 4E37A 2A9EA 1U5UA 4B40A 3PQ8A 1CF9A 1GWFA 1H7KA 2IQFA 1GGKA 3ZJ4A 4BIMA 2IUFA 1H6NA 1QWMA 4B5KA 3P9SA 1P80A 1QF7A 3DY5A 4QOPA 4QONA 1P81A 3P9PA 3HB6A 1GWHA 1GWEA 4BFLA 1GGEA 4B31A 3PQ3A 4ENVA 1M85A 4ENRA 3PQ7A 1HBZA 2XQ1A 4QOLA 1SI8A 1F4JA 3PQ4A 1A4EA 1GGHA 3TTXA 3PQ6A 4QOMA 1MQFA 4QOQA 1GGJA 1IPHA 4AUMA 4QOOA 4AULA 3PQ2A 1E93A 4ENSA 2CAHA 4ENPA 3TTUA 1P7YA 5BV2P 2CAGA 4B7AA 1NM0A 3P9RA 2ISAA 4QORA 1GG9A 3TTVA 4B2YA 3P9QA 2J2MA
chains in the Genus database with same CATH superfamily
3TTWA 4ENWA 3PQ5A 4ENQA 1DGFA 1DGHA 4AUNA 1GGFA 4AUEA 1QQWA 1QWLA 1SY7A 3VU3A 7CATA 1P7ZA 3ZJ5A 4CABA 1M7SA 3EJ6A 3TTTA 1QWSA 4ENTA 4AJ9A 4ENUA 2XF2A 4E37A 2A9EA 4BLCA 1U5UA 4B40A 3E4YA 3PQ8A 1CF9A 1GWFA 3RGSA 1H7KA 2IQFA 8CATA 1GGKA 3RGPA 3ZJ4A 4BIMA 2IUFA 1H6NA 1QWMA 4B5KA 3P9SA 4B7FA 1P80A 1QF7A 3DY5A 4QOPA 4QONA 1P81A 3P9PA 3HB6A 1GWHA 4B7HA 1GWEA 4BFLA 1GGEA 4B31A 3PQ3A 3RE8A 1M85A 4ENVA 1DGBA 4ENRA 3PQ7A 1HBZA 3E4WA 2XQ1A 1TH4A 4QOLA 1SI8A 1TH3A 1F4JA 1TGUA 3PQ4A 1A4EA 1GGHA 3TTXA 3PQ6A 4QOMA 1MQFA 4QOQA 1GGJA 1IPHA 4AUMA 4QOOA 4AULA 3PQ2A 1E93A 4ENSA 3NWLA 1DGHB 2CAHA 4ENPA 3TTUA 1P7YA 5BV2P 2CAGA 4B7AA 1NM0A 5GKNA 3J7BA 3P9RA 2ISAA 4QORA 1GG9A 3TTVA 1TH2A 4B2YA 1DGGA 3P9QA 2J2MA 4B7GA
chains in the Genus database with same CATH topology
3TTWA 4ENWA 3PQ5A 4ENQA 4AUNA 1GGFA 4AUEA 1QWLA 1SY7A 3VU3A 1P7ZA 3ZJ5A 4CABA 1M7SA 3EJ6A 3TTTA 1QWSA 4ENTA 4AJ9A 4ENUA 2XF2A 4E37A 2A9EA 1U5UA 4B40A 3PQ8A 1CF9A 1GWFA 1H7KA 2IQFA 1GGKA 3ZJ4A 4BIMA 2IUFA 1H6NA 1QWMA 4B5KA 3P9SA 1P80A 1QF7A 3DY5A 4QOPA 4QONA 1P81A 3P9PA 3HB6A 1GWHA 1GWEA 4BFLA 1GGEA 4B31A 3PQ3A 4ENVA 1M85A 4ENRA 3PQ7A 1HBZA 2XQ1A 4QOLA 1SI8A 1F4JA 3PQ4A 1A4EA 1GGHA 3TTXA 3PQ6A 4QOMA 1MQFA 4QOQA 1GGJA 1IPHA 4AUMA 4QOOA 4AULA 3PQ2A 1E93A 4ENSA 2CAHA 4ENPA 3TTUA 1P7YA 5BV2P 2CAGA 4B7AA 1NM0A 3P9RA 2ISAA 4QORA 1GG9A 3TTVA 4B2YA 3P9QA 2J2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TTW A;  4ENW A;  3PQ5 A;  4ENQ A;  4AUN A;  1GGF A;  4AUE A;  1QWL A;  1SY7 A;  3VU3 A;  1P7Z A;  3ZJ5 A;  4CAB A;  1M7S A;  3EJ6 A;  3TTT A;  1QWS A;  4ENT A;  4AJ9 A;  4ENU A;  2XF2 A;  4E37 A;  2A9E A;  1U5U A;  4B40 A;  3PQ8 A;  1CF9 A;  1GWF A;  1H7K A;  2IQF A;  1GGK A;  3ZJ4 A;  4BIM A;  2IUF A;  1H6N A;  1QWM A;  4B5K A;  3P9S A;  1P80 A;  1QF7 A;  3DY5 A;  4QOP A;  4QON A;  1P81 A;  3P9P A;  3HB6 A;  1GWH A;  1GWE A;  4BFL A;  1GGE A;  4B31 A;  3PQ3 A;  4ENV A;  1M85 A;  4ENR A;  3PQ7 A;  1HBZ A;  2XQ1 A;  4QOL A;  1SI8 A;  1F4J A;  3PQ4 A;  1A4E A;  1GGH A;  3TTX A;  3PQ6 A;  4QOM A;  1MQF A;  4QOQ A;  1GGJ A;  1IPH A;  4AUM A;  4QOO A;  4AUL A;  3PQ2 A;  1E93 A;  4ENS A;  2CAH A;  4ENP A;  3TTU A;  1P7Y A;  5BV2 P;  2CAG A;  4B7A A;  1NM0 A;  3P9R A;  2ISA A;  4QOR A;  1GG9 A;  3TTV A;  4B2Y A;  3P9Q A;  2J2M A; 
#chains in the Genus database with same CATH topology
 3TTW A;  4ENW A;  3PQ5 A;  4ENQ A;  1DGF A;  1DGH A;  4AUN A;  1GGF A;  4AUE A;  1QQW A;  1QWL A;  1SY7 A;  3VU3 A;  7CAT A;  1P7Z A;  3ZJ5 A;  4CAB A;  1M7S A;  3EJ6 A;  3TTT A;  1QWS A;  4ENT A;  4AJ9 A;  4ENU A;  2XF2 A;  4E37 A;  2A9E A;  4BLC A;  1U5U A;  4B40 A;  3E4Y A;  3PQ8 A;  1CF9 A;  1GWF A;  3RGS A;  1H7K A;  2IQF A;  8CAT A;  1GGK A;  3RGP A;  3ZJ4 A;  4BIM A;  2IUF A;  1H6N A;  1QWM A;  4B5K A;  3P9S A;  4B7F A;  1P80 A;  1QF7 A;  3DY5 A;  4QOP A;  4QON A;  1P81 A;  3P9P A;  3HB6 A;  1GWH A;  4B7H A;  1GWE A;  4BFL A;  1GGE A;  4B31 A;  3PQ3 A;  3RE8 A;  1M85 A;  4ENV A;  1DGB A;  4ENR A;  3PQ7 A;  1HBZ A;  3E4W A;  2XQ1 A;  1TH4 A;  4QOL A;  1SI8 A;  1TH3 A;  1F4J A;  1TGU A;  3PQ4 A;  1A4E A;  1GGH A;  3TTX A;  3PQ6 A;  4QOM A;  1MQF A;  4QOQ A;  1GGJ A;  1IPH A;  4AUM A;  4QOO A;  4AUL A;  3PQ2 A;  1E93 A;  4ENS A;  3NWL A;  1DGH B;  2CAH A;  4ENP A;  3TTU A;  1P7Y A;  5BV2 P;  2CAG A;  4B7A A;  1NM0 A;  5GKN A;  3J7B A;  3P9R A;  2ISA A;  4QOR A;  1GG9 A;  3TTV A;  1TH2 A;  4B2Y A;  1DGG A;  3P9Q A;  2J2M A;  4B7G A; 
#chains in the Genus database with same CATH homology
 3TTW A;  4ENW A;  3PQ5 A;  4ENQ A;  4AUN A;  1GGF A;  4AUE A;  1QWL A;  1SY7 A;  3VU3 A;  1P7Z A;  3ZJ5 A;  4CAB A;  1M7S A;  3EJ6 A;  3TTT A;  1QWS A;  4ENT A;  4AJ9 A;  4ENU A;  2XF2 A;  4E37 A;  2A9E A;  1U5U A;  4B40 A;  3PQ8 A;  1CF9 A;  1GWF A;  1H7K A;  2IQF A;  1GGK A;  3ZJ4 A;  4BIM A;  2IUF A;  1H6N A;  1QWM A;  4B5K A;  3P9S A;  1P80 A;  1QF7 A;  3DY5 A;  4QOP A;  4QON A;  1P81 A;  3P9P A;  3HB6 A;  1GWH A;  1GWE A;  4BFL A;  1GGE A;  4B31 A;  3PQ3 A;  4ENV A;  1M85 A;  4ENR A;  3PQ7 A;  1HBZ A;  2XQ1 A;  4QOL A;  1SI8 A;  1F4J A;  3PQ4 A;  1A4E A;  1GGH A;  3TTX A;  3PQ6 A;  4QOM A;  1MQF A;  4QOQ A;  1GGJ A;  1IPH A;  4AUM A;  4QOO A;  4AUL A;  3PQ2 A;  1E93 A;  4ENS A;  2CAH A;  4ENP A;  3TTU A;  1P7Y A;  5BV2 P;  2CAG A;  4B7A A;  1NM0 A;  3P9R A;  2ISA A;  4QOR A;  1GG9 A;  3TTV A;  4B2Y A;  3P9Q A;  2J2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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