4QORA

Structure of bacillus pumilus catalase with chlorophenol bound.
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qorA00
3P9QA 4ENPA 2IQFA 1GWFA 1SY7A 3PQ5A 2J2MA 4B7AA 1GGJA 2IUFA 4QOMA 4QOQA 4QORA 1P81A 4AUEA 4ENRA 1MQFA 1GWEA 1H6NA 1U5UA 1M85A 4CABA 5BV2P 4BIMA 4ENTA 1M7SA 4B31A 3PQ2A 1E93A 4QOOA 1F4JA 3TTVA 3VU3A 1IPHA 4BFLA 4AJ9A 3TTUA 4B40A 2CAGA 1P80A 3PQ7A 4ENSA 1GGKA 4QOPA 1QWMA 1GGFA 3PQ3A 3P9SA 1GGEA 3ZJ4A 2A9EA 1HBZA 2ISAA 3EJ6A 3ZJ5A 3P9RA 1NM0A 1CF9A 3TTWA 1QF7A 1H7KA 1A4EA 4ENUA 3DY5A 4AULA 3PQ8A 1GG9A 4QOLA 3HB6A 1P7ZA 4E37A 1GWHA 1QWLA 2XF2A 3PQ6A 2CAHA 4AUNA 4ENQA 1P7YA 4AUMA 1SI8A 3TTXA 4ENWA 2XQ1A 3PQ4A 3TTTA 3P9PA 4QONA 1GGHA 4ENVA 1QWSA 4B5KA 4B2YA
chains in the Genus database with same CATH superfamily
1DGHA 7CATA 3P9QA 3NWLA 4ENPA 2IQFA 1GWFA 1SY7A 3PQ5A 2J2MA 4B7FA 1GGJA 4B7AA 2IUFA 4QOMA 3E4WA 4QOQA 4QORA 1P81A 4AUEA 4ENRA 1MQFA 1GWEA 1H6NA 1U5UA 1M85A 4CABA 3RGSA 5BV2P 4BIMA 3J7BA 4ENTA 1TH3A 1M7SA 3RGPA 4B31A 3PQ2A 8CATA 1E93A 3RE8A 4QOOA 1F4JA 3TTVA 3VU3A 1IPHA 4BFLA 4AJ9A 3TTUA 4B40A 2CAGA 1P80A 3PQ7A 1DGFA 4ENSA 1GGKA 4QOPA 1QWMA 1GGFA 3PQ3A 3P9SA 1GGEA 3ZJ4A 2A9EA 1HBZA 3E4YA 4BLCA 2ISAA 3EJ6A 3ZJ5A 3P9RA 1TGUA 1NM0A 1CF9A 3TTWA 1QF7A 1H7KA 1A4EA 4ENUA 3DY5A 1QQWA 4AULA 1TH2A 3PQ8A 1GG9A 4B7HA 4QOLA 1DGHB 1DGGA 5GKNA 3HB6A 1P7ZA 4E37A 1GWHA 1QWLA 2XF2A 3PQ6A 2CAHA 4AUNA 1TH4A 4B7GA 1P7YA 4ENQA 4AUMA 1SI8A 3TTXA 4ENWA 2XQ1A 3PQ4A 1DGBA 3TTTA 3P9PA 4QONA 1GGHA 4ENVA 1QWSA 4B5KA 4B2YA
chains in the Genus database with same CATH topology
3P9QA 4ENPA 2IQFA 1GWFA 1SY7A 3PQ5A 2J2MA 4B7AA 1GGJA 2IUFA 4QOMA 4QOQA 4QORA 1P81A 4AUEA 4ENRA 1MQFA 1GWEA 1H6NA 1U5UA 1M85A 4CABA 5BV2P 4BIMA 4ENTA 1M7SA 4B31A 3PQ2A 1E93A 4QOOA 1F4JA 3TTVA 3VU3A 1IPHA 4BFLA 4AJ9A 3TTUA 4B40A 2CAGA 1P80A 3PQ7A 4ENSA 1GGKA 4QOPA 1QWMA 1GGFA 3PQ3A 3P9SA 1GGEA 3ZJ4A 2A9EA 1HBZA 2ISAA 3EJ6A 3ZJ5A 3P9RA 1NM0A 1CF9A 3TTWA 1QF7A 1H7KA 1A4EA 4ENUA 3DY5A 4AULA 3PQ8A 1GG9A 4QOLA 3HB6A 1P7ZA 4E37A 1GWHA 1QWLA 2XF2A 3PQ6A 2CAHA 4AUNA 4ENQA 1P7YA 4AUMA 1SI8A 3TTXA 4ENWA 2XQ1A 3PQ4A 3TTTA 3P9PA 4QONA 1GGHA 4ENVA 1QWSA 4B5KA 4B2YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P9Q A;  4ENP A;  2IQF A;  1GWF A;  1SY7 A;  3PQ5 A;  2J2M A;  4B7A A;  1GGJ A;  2IUF A;  4QOM A;  4QOQ A;  4QOR A;  1P81 A;  4AUE A;  4ENR A;  1MQF A;  1GWE A;  1H6N A;  1U5U A;  1M85 A;  4CAB A;  5BV2 P;  4BIM A;  4ENT A;  1M7S A;  4B31 A;  3PQ2 A;  1E93 A;  4QOO A;  1F4J A;  3TTV A;  3VU3 A;  1IPH A;  4BFL A;  4AJ9 A;  3TTU A;  4B40 A;  2CAG A;  1P80 A;  3PQ7 A;  4ENS A;  1GGK A;  4QOP A;  1QWM A;  1GGF A;  3PQ3 A;  3P9S A;  1GGE A;  3ZJ4 A;  2A9E A;  1HBZ A;  2ISA A;  3EJ6 A;  3ZJ5 A;  3P9R A;  1NM0 A;  1CF9 A;  3TTW A;  1QF7 A;  1H7K A;  1A4E A;  4ENU A;  3DY5 A;  4AUL A;  3PQ8 A;  1GG9 A;  4QOL A;  3HB6 A;  1P7Z A;  4E37 A;  1GWH A;  1QWL A;  2XF2 A;  3PQ6 A;  2CAH A;  4AUN A;  4ENQ A;  1P7Y A;  4AUM A;  1SI8 A;  3TTX A;  4ENW A;  2XQ1 A;  3PQ4 A;  3TTT A;  3P9P A;  4QON A;  1GGH A;  4ENV A;  1QWS A;  4B5K A;  4B2Y A; 
#chains in the Genus database with same CATH topology
 1DGH A;  7CAT A;  3P9Q A;  3NWL A;  4ENP A;  2IQF A;  1GWF A;  1SY7 A;  3PQ5 A;  2J2M A;  4B7F A;  1GGJ A;  4B7A A;  2IUF A;  4QOM A;  3E4W A;  4QOQ A;  4QOR A;  1P81 A;  4AUE A;  4ENR A;  1MQF A;  1GWE A;  1H6N A;  1U5U A;  1M85 A;  4CAB A;  3RGS A;  5BV2 P;  4BIM A;  3J7B A;  4ENT A;  1TH3 A;  1M7S A;  3RGP A;  4B31 A;  3PQ2 A;  8CAT A;  1E93 A;  3RE8 A;  4QOO A;  1F4J A;  3TTV A;  3VU3 A;  1IPH A;  4BFL A;  4AJ9 A;  3TTU A;  4B40 A;  2CAG A;  1P80 A;  3PQ7 A;  1DGF A;  4ENS A;  1GGK A;  4QOP A;  1QWM A;  1GGF A;  3PQ3 A;  3P9S A;  1GGE A;  3ZJ4 A;  2A9E A;  1HBZ A;  3E4Y A;  4BLC A;  2ISA A;  3EJ6 A;  3ZJ5 A;  3P9R A;  1TGU A;  1NM0 A;  1CF9 A;  3TTW A;  1QF7 A;  1H7K A;  1A4E A;  4ENU A;  3DY5 A;  1QQW A;  4AUL A;  1TH2 A;  3PQ8 A;  1GG9 A;  4B7H A;  4QOL A;  1DGH B;  1DGG A;  5GKN A;  3HB6 A;  1P7Z A;  4E37 A;  1GWH A;  1QWL A;  2XF2 A;  3PQ6 A;  2CAH A;  4AUN A;  1TH4 A;  4B7G A;  1P7Y A;  4ENQ A;  4AUM A;  1SI8 A;  3TTX A;  4ENW A;  2XQ1 A;  3PQ4 A;  1DGB A;  3TTT A;  3P9P A;  4QON A;  1GGH A;  4ENV A;  1QWS A;  4B5K A;  4B2Y A; 
#chains in the Genus database with same CATH homology
 3P9Q A;  4ENP A;  2IQF A;  1GWF A;  1SY7 A;  3PQ5 A;  2J2M A;  4B7A A;  1GGJ A;  2IUF A;  4QOM A;  4QOQ A;  4QOR A;  1P81 A;  4AUE A;  4ENR A;  1MQF A;  1GWE A;  1H6N A;  1U5U A;  1M85 A;  4CAB A;  5BV2 P;  4BIM A;  4ENT A;  1M7S A;  4B31 A;  3PQ2 A;  1E93 A;  4QOO A;  1F4J A;  3TTV A;  3VU3 A;  1IPH A;  4BFL A;  4AJ9 A;  3TTU A;  4B40 A;  2CAG A;  1P80 A;  3PQ7 A;  4ENS A;  1GGK A;  4QOP A;  1QWM A;  1GGF A;  3PQ3 A;  3P9S A;  1GGE A;  3ZJ4 A;  2A9E A;  1HBZ A;  2ISA A;  3EJ6 A;  3ZJ5 A;  3P9R A;  1NM0 A;  1CF9 A;  3TTW A;  1QF7 A;  1H7K A;  1A4E A;  4ENU A;  3DY5 A;  4AUL A;  3PQ8 A;  1GG9 A;  4QOL A;  3HB6 A;  1P7Z A;  4E37 A;  1GWH A;  1QWL A;  2XF2 A;  3PQ6 A;  2CAH A;  4AUN A;  4ENQ A;  1P7Y A;  4AUM A;  1SI8 A;  3TTX A;  4ENW A;  2XQ1 A;  3PQ4 A;  3TTT A;  3P9P A;  4QON A;  1GGH A;  4ENV A;  1QWS A;  4B5K A;  4B2Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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