4QQSA

Crystal structure of a thermostable family-43 glycoside hydrolase
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
312
structure length
312
Chain Sequence
TYTNPVGGITGIGDPYVLKHESRYYLYATSAINRGFKVWESPNLVDWELKGLALDSYYEKNGWGTEDFWAPEVIFYNNKFYMTYSARDNDGHLKIALASSKSPLGPFKNIKAPLFDRGLSFIDAHIFIDQDGTPYIYYVKDCSENIINGIHISQIYVQEMSQDLLELKGDPVLAIQPSQDWEGINDAWQWNEGPFVIKHEGKYYMMYSANCYASPDYSIGYAVAETPLGPWIKYSGNPILSKRMDKGISGPGHNSVTVSPDGSELFVVYHTHTYPDSPGGDRTVNIDRLYFEDGILKVKGPTRSPQPGPRSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Glycoside hydrolase family 43
publication title High-resolution crystal structure of a polyextreme GH43 glycosidase from Halothermothrix orenii with alpha-L-arabinofuranosidase activity.
pubmed doi rcsb
source organism Halothermothrix orenii
total genus 72
structure length 312
sequence length 312
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4qqsA00
3VSZA 4N2ZA 2YFRA 4N4BA 3OM6A 3R4YA 4KC8A 1YRZA 4KMIA 4ONZA 3WN0A 4FFIA 5JOYA 5C0PA 2X8FA 4AK6A 4U6DA 4UDJA 4MLGA 1GYDB 3UGGA 3CU9A 3LV4A 4KCBA 5FMDA 3LF7A 3PIGA 2AEYA 3QC2A 3PIJA 3VT1A 3U14A 1OYGA 4U6BA 4UDKE 2YFSA 3RWKX 4FFGA 3SC7X 5FMBA 5FLWA 4KCAA 5FK8A 1WL7A 3WMYA 2QQVA 5GLPA 1UV4A 3AKIA 5GLLA 1ST8A 3R67A 3QZ4A 3KSTA 3UGFA 4QQSA 3NQHA 3C2UA 3ZXLA 5FIXA 5FK7A 3D5YA 2AEZA 1Y9MA 3WN2A 3KF5A 4NOVA 3LDRA 3R4ZA 1VKDA 1W18A 4EQVA 5GLOA 4PVAA 5FKCA 5AY9A 2EXJA 3UGHA 4FFHA 5JOXA 4O8PA 3WMZA 3D60A 4UDKA 2X8SA 1PT2A 5ANNA 5GLMA 1GYEB 4UDGA 5B6TA 1UYPA 2XQRA 3BYNA 3D5ZA 3OM7A 4N1IA 2VDTA 5A7VA 5A8DA 5A7VB 3K1UA 3LEMA 5AYEA 3WATA 3VSFA 4AK7A 1GYHA 1Y4WA 2EXKA 5B6SA 3D61A 1Y7BA 2AC1A 3OM2A 3KF3A 1W2TA 3AKGA 3WPZA 4UDIA 5GLQA 3LFIA 3QEFA 4D47A 4O8OA 5GLNA 3BYJA 5JOWA 5FMCA 3LDKA 2ADDA 3C7GA 4PVIA 3QEDA 3TAWA 3WPVA 3ZXJA 4AK5A 4FFFA 1YIFA 4N2RA 5FKBA 2OXBA 3AKFA 3ZXKA 3P2NA 3C7FA 5GLKA 4O8NA 3WN1A 3OM5A 3WASA 2QQUA 2X8TA 1YI7A 3BYLA 3LIGA 2EXIA 3VT0A 3WAUA 3WPYA 4KC7A 4COTA 5AYDA 3WPUA 3U75A 2QQWA 3C7OA 5GLRA 5JOZA 3OM4A 2B4WA 3C7HA 3LIHA 3VSSA 2YFTA 3VT2A 2EXHA 3QEEA 3BYKA 2ADEA 5A8CA 1Y9GA 3AKHA 3C7EA 5AYCA 3VSRA
chains in the Genus database with same CATH superfamily
3VSZA 4N2ZA 2YFRA 4N4BA 3OM6A 3R4YA 4KC8A 1YRZA 4KMIA 4ONZA 3WN0A 4FFIA 5JOYA 5C0PA 2X8FA 4AK6A 4U6DA 4UDJA 4MLGA 1GYDB 3UGGA 3CU9A 3LV4A 4KCBA 5FMDA 3LF7A 3PIGA 2AEYA 3QC2A 3PIJA 3VT1A 3U14A 1OYGA 4U6BA 4UDKE 2YFSA 3RWKX 4FFGA 3SC7X 5FMBA 5FLWA 4KCAA 5FK8A 1WL7A 3WMYA 2QQVA 5GLPA 1UV4A 3AKIA 5GLLA 1ST8A 3R67A 3QZ4A 3KSTA 3UGFA 4QQSA 3NQHA 3C2UA 3ZXLA 5FIXA 5FK7A 3D5YA 2AEZA 1Y9MA 3WN2A 3KF5A 4NOVA 3LDRA 3R4ZA 1VKDA 1W18A 4EQVA 5GLOA 4PVAA 5FKCA 5AY9A 2EXJA 3UGHA 4FFHA 5JOXA 4O8PA 3WMZA 3D60A 4UDKA 2X8SA 1PT2A 5ANNA 5GLMA 1GYEB 4UDGA 5B6TA 1UYPA 2XQRA 3BYNA 3D5ZA 3OM7A 4N1IA 2VDTA 5A7VA 5A8DA 5A7VB 3K1UA 3LEMA 5AYEA 3WATA 3VSFA 4AK7A 1GYHA 1Y4WA 2EXKA 5B6SA 3D61A 1Y7BA 2AC1A 3KF3A 3OM2A 1W2TA 3AKGA 3WPZA 4UDIA 5GLQA 3LFIA 3QEFA 4D47A 4O8OA 5GLNA 3BYJA 5JOWA 5FMCA 3LDKA 2ADDA 3C7GA 4PVIA 3QEDA 3TAWA 3WPVA 3ZXJA 4AK5A 4FFFA 1YIFA 4N2RA 5FKBA 2OXBA 3AKFA 3ZXKA 3P2NA 3C7FA 5GLKA 4O8NA 3WN1A 3OM5A 3WASA 2QQUA 2X8TA 1TL2A 1YI7A 3BYLA 2EXIA 3LIGA 3VT0A 3WAUA 4KC7A 3WPYA 4COTA 5AYDA 3WPUA 3U75A 2QQWA 3C7OA 5GLRA 5C2MA 3OM4A 2B4WA 3C7HA 3LIHA 3VSSA 5JOZA 2YFTA 3VT2A 2EXHA 3QEEA 3BYKA 2ADEA 5A8CA 1Y9GA 3AKHA 3C7EA 5AYCA 3VSRA
chains in the Genus database with same CATH topology
3VSZA 4N2ZA 2YFRA 4N4BA 3OM6A 3R4YA 4KC8A 1YRZA 4KMIA 4ONZA 3WN0A 4FFIA 5JOYA 5C0PA 2X8FA 4AK6A 4U6DA 4UDJA 4MLGA 1GYDB 3UGGA 3CU9A 3LV4A 4KCBA 5FMDA 3LF7A 3PIGA 2AEYA 3QC2A 3PIJA 3VT1A 3U14A 1OYGA 4U6BA 4UDKE 2YFSA 3RWKX 4FFGA 3SC7X 5FMBA 5FLWA 4KCAA 5FK8A 1WL7A 3WMYA 2QQVA 5GLPA 1UV4A 3AKIA 5GLLA 1ST8A 3R67A 3QZ4A 3KSTA 3UGFA 4QQSA 3NQHA 3C2UA 3ZXLA 5FIXA 5FK7A 3D5YA 2AEZA 1Y9MA 3WN2A 3KF5A 4NOVA 3LDRA 3R4ZA 1VKDA 1W18A 4EQVA 5GLOA 4PVAA 5FKCA 5AY9A 2EXJA 3UGHA 4FFHA 5JOXA 4O8PA 3WMZA 3D60A 4UDKA 2X8SA 1PT2A 5ANNA 5GLMA 1GYEB 4UDGA 5B6TA 1UYPA 2XQRA 3BYNA 3D5ZA 3OM7A 4N1IA 2VDTA 5A7VA 5A8DA 5A7VB 3K1UA 3LEMA 5AYEA 3WATA 3VSFA 4AK7A 1GYHA 1Y4WA 2EXKA 5B6SA 3D61A 1Y7BA 2AC1A 3OM2A 3KF3A 1W2TA 3AKGA 3WPZA 4UDIA 5GLQA 3LFIA 3QEFA 4D47A 4O8OA 5GLNA 3BYJA 5JOWA 5FMCA 3LDKA 2ADDA 3C7GA 4PVIA 3QEDA 3TAWA 3WPVA 3ZXJA 4AK5A 4FFFA 1YIFA 4N2RA 5FKBA 2OXBA 3AKFA 3ZXKA 3P2NA 3C7FA 5GLKA 4O8NA 3WN1A 3OM5A 3WASA 2QQUA 2X8TA 1YI7A 3BYLA 3LIGA 2EXIA 3VT0A 3WAUA 3WPYA 4KC7A 4COTA 5AYDA 3WPUA 3U75A 2QQWA 3C7OA 5GLRA 5JOZA 3OM4A 2B4WA 3C7HA 3LIHA 3VSSA 2YFTA 3VT2A 2EXHA 3QEEA 3BYKA 2ADEA 5A8CA 1Y9GA 3AKHA 3C7EA 5AYCA 3VSRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VSZ A;  4N2Z A;  2YFR A;  4N4B A;  3OM6 A;  3R4Y A;  4KC8 A;  1YRZ A;  4KMI A;  4ONZ A;  3WN0 A;  4FFI A;  5JOY A;  5C0P A;  2X8F A;  4AK6 A;  4U6D A;  4UDJ A;  4MLG A;  1GYD B;  3UGG A;  3CU9 A;  3LV4 A;  4KCB A;  5FMD A;  3LF7 A;  3PIG A;  2AEY A;  3QC2 A;  3PIJ A;  3VT1 A;  3U14 A;  1OYG A;  4U6B A;  4UDK E;  2YFS A;  3RWK X;  4FFG A;  3SC7 X;  5FMB A;  5FLW A;  4KCA A;  5FK8 A;  1WL7 A;  3WMY A;  2QQV A;  5GLP A;  1UV4 A;  3AKI A;  5GLL A;  1ST8 A;  3R67 A;  3QZ4 A;  3KST A;  3UGF A;  4QQS A;  3NQH A;  3C2U A;  3ZXL A;  5FIX A;  5FK7 A;  3D5Y A;  2AEZ A;  1Y9M A;  3WN2 A;  3KF5 A;  4NOV A;  3LDR A;  3R4Z A;  1VKD A;  1W18 A;  4EQV A;  5GLO A;  4PVA A;  5FKC A;  5AY9 A;  2EXJ A;  3UGH A;  4FFH A;  5JOX A;  4O8P A;  3WMZ A;  3D60 A;  4UDK A;  2X8S A;  1PT2 A;  5ANN A;  5GLM A;  1GYE B;  4UDG A;  5B6T A;  1UYP A;  2XQR A;  3BYN A;  3D5Z A;  3OM7 A;  4N1I A;  2VDT A;  5A7V A;  5A8D A;  5A7V B;  3K1U A;  3LEM A;  5AYE A;  3WAT A;  3VSF A;  4AK7 A;  1GYH A;  1Y4W A;  2EXK A;  5B6S A;  3D61 A;  1Y7B A;  2AC1 A;  3OM2 A;  3KF3 A;  1W2T A;  3AKG A;  3WPZ A;  4UDI A;  5GLQ A;  3LFI A;  3QEF A;  4D47 A;  4O8O A;  5GLN A;  3BYJ A;  5JOW A;  5FMC A;  3LDK A;  2ADD A;  3C7G A;  4PVI A;  3QED A;  3TAW A;  3WPV A;  3ZXJ A;  4AK5 A;  4FFF A;  1YIF A;  4N2R A;  5FKB A;  2OXB A;  3AKF A;  3ZXK A;  3P2N A;  3C7F A;  5GLK A;  4O8N A;  3WN1 A;  3OM5 A;  3WAS A;  2QQU A;  2X8T A;  1YI7 A;  3BYL A;  3LIG A;  2EXI A;  3VT0 A;  3WAU A;  3WPY A;  4KC7 A;  4COT A;  5AYD A;  3WPU A;  3U75 A;  2QQW A;  3C7O A;  5GLR A;  5JOZ A;  3OM4 A;  2B4W A;  3C7H A;  3LIH A;  3VSS A;  2YFT A;  3VT2 A;  2EXH A;  3QEE A;  3BYK A;  2ADE A;  5A8C A;  1Y9G A;  3AKH A;  3C7E A;  5AYC A;  3VSR A; 
#chains in the Genus database with same CATH topology
 3VSZ A;  4N2Z A;  2YFR A;  4N4B A;  3OM6 A;  3R4Y A;  4KC8 A;  1YRZ A;  4KMI A;  4ONZ A;  3WN0 A;  4FFI A;  5JOY A;  5C0P A;  2X8F A;  4AK6 A;  4U6D A;  4UDJ A;  4MLG A;  1GYD B;  3UGG A;  3CU9 A;  3LV4 A;  4KCB A;  5FMD A;  3LF7 A;  3PIG A;  2AEY A;  3QC2 A;  3PIJ A;  3VT1 A;  3U14 A;  1OYG A;  4U6B A;  4UDK E;  2YFS A;  3RWK X;  4FFG A;  3SC7 X;  5FMB A;  5FLW A;  4KCA A;  5FK8 A;  1WL7 A;  3WMY A;  2QQV A;  5GLP A;  1UV4 A;  3AKI A;  5GLL A;  1ST8 A;  3R67 A;  3QZ4 A;  3KST A;  3UGF A;  4QQS A;  3NQH A;  3C2U A;  3ZXL A;  5FIX A;  5FK7 A;  3D5Y A;  2AEZ A;  1Y9M A;  3WN2 A;  3KF5 A;  4NOV A;  3LDR A;  3R4Z A;  1VKD A;  1W18 A;  4EQV A;  5GLO A;  4PVA A;  5FKC A;  5AY9 A;  2EXJ A;  3UGH A;  4FFH A;  5JOX A;  4O8P A;  3WMZ A;  3D60 A;  4UDK A;  2X8S A;  1PT2 A;  5ANN A;  5GLM A;  1GYE B;  4UDG A;  5B6T A;  1UYP A;  2XQR A;  3BYN A;  3D5Z A;  3OM7 A;  4N1I A;  2VDT A;  5A7V A;  5A8D A;  5A7V B;  3K1U A;  3LEM A;  5AYE A;  3WAT A;  3VSF A;  4AK7 A;  1GYH A;  1Y4W A;  2EXK A;  5B6S A;  3D61 A;  1Y7B A;  2AC1 A;  3KF3 A;  3OM2 A;  1W2T A;  3AKG A;  3WPZ A;  4UDI A;  5GLQ A;  3LFI A;  3QEF A;  4D47 A;  4O8O A;  5GLN A;  3BYJ A;  5JOW A;  5FMC A;  3LDK A;  2ADD A;  3C7G A;  4PVI A;  3QED A;  3TAW A;  3WPV A;  3ZXJ A;  4AK5 A;  4FFF A;  1YIF A;  4N2R A;  5FKB A;  2OXB A;  3AKF A;  3ZXK A;  3P2N A;  3C7F A;  5GLK A;  4O8N A;  3WN1 A;  3OM5 A;  3WAS A;  2QQU A;  2X8T A;  1TL2 A;  1YI7 A;  3BYL A;  2EXI A;  3LIG A;  3VT0 A;  3WAU A;  4KC7 A;  3WPY A;  4COT A;  5AYD A;  3WPU A;  3U75 A;  2QQW A;  3C7O A;  5GLR A;  5C2M A;  3OM4 A;  2B4W A;  3C7H A;  3LIH A;  3VSS A;  5JOZ A;  2YFT A;  3VT2 A;  2EXH A;  3QEE A;  3BYK A;  2ADE A;  5A8C A;  1Y9G A;  3AKH A;  3C7E A;  5AYC A;  3VSR A; 
#chains in the Genus database with same CATH homology
 3VSZ A;  4N2Z A;  2YFR A;  4N4B A;  3OM6 A;  3R4Y A;  4KC8 A;  1YRZ A;  4KMI A;  4ONZ A;  3WN0 A;  4FFI A;  5JOY A;  5C0P A;  2X8F A;  4AK6 A;  4U6D A;  4UDJ A;  4MLG A;  1GYD B;  3UGG A;  3CU9 A;  3LV4 A;  4KCB A;  5FMD A;  3LF7 A;  3PIG A;  2AEY A;  3QC2 A;  3PIJ A;  3VT1 A;  3U14 A;  1OYG A;  4U6B A;  4UDK E;  2YFS A;  3RWK X;  4FFG A;  3SC7 X;  5FMB A;  5FLW A;  4KCA A;  5FK8 A;  1WL7 A;  3WMY A;  2QQV A;  5GLP A;  1UV4 A;  3AKI A;  5GLL A;  1ST8 A;  3R67 A;  3QZ4 A;  3KST A;  3UGF A;  4QQS A;  3NQH A;  3C2U A;  3ZXL A;  5FIX A;  5FK7 A;  3D5Y A;  2AEZ A;  1Y9M A;  3WN2 A;  3KF5 A;  4NOV A;  3LDR A;  3R4Z A;  1VKD A;  1W18 A;  4EQV A;  5GLO A;  4PVA A;  5FKC A;  5AY9 A;  2EXJ A;  3UGH A;  4FFH A;  5JOX A;  4O8P A;  3WMZ A;  3D60 A;  4UDK A;  2X8S A;  1PT2 A;  5ANN A;  5GLM A;  1GYE B;  4UDG A;  5B6T A;  1UYP A;  2XQR A;  3BYN A;  3D5Z A;  3OM7 A;  4N1I A;  2VDT A;  5A7V A;  5A8D A;  5A7V B;  3K1U A;  3LEM A;  5AYE A;  3WAT A;  3VSF A;  4AK7 A;  1GYH A;  1Y4W A;  2EXK A;  5B6S A;  3D61 A;  1Y7B A;  2AC1 A;  3OM2 A;  3KF3 A;  1W2T A;  3AKG A;  3WPZ A;  4UDI A;  5GLQ A;  3LFI A;  3QEF A;  4D47 A;  4O8O A;  5GLN A;  3BYJ A;  5JOW A;  5FMC A;  3LDK A;  2ADD A;  3C7G A;  4PVI A;  3QED A;  3TAW A;  3WPV A;  3ZXJ A;  4AK5 A;  4FFF A;  1YIF A;  4N2R A;  5FKB A;  2OXB A;  3AKF A;  3ZXK A;  3P2N A;  3C7F A;  5GLK A;  4O8N A;  3WN1 A;  3OM5 A;  3WAS A;  2QQU A;  2X8T A;  1YI7 A;  3BYL A;  3LIG A;  2EXI A;  3VT0 A;  3WAU A;  3WPY A;  4KC7 A;  4COT A;  5AYD A;  3WPU A;  3U75 A;  2QQW A;  3C7O A;  5GLR A;  5JOZ A;  3OM4 A;  2B4W A;  3C7H A;  3LIH A;  3VSS A;  2YFT A;  3VT2 A;  2EXH A;  3QEE A;  3BYK A;  2ADE A;  5A8C A;  1Y9G A;  3AKH A;  3C7E A;  5AYC A;  3VSR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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