4QUQA

Crystal structure of stachydrine demethylase in complex with azide
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
413
structure length
401
Chain Sequence
NLYFQSMMTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALAP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Monoxygenase; demethylase
publication title Tracking photoelectron induced in-crystallo enzyme catalysis
rcsb
source organism Sinorhizobium meliloti 1021
total genus 126
structure length 401
sequence length 413
ec nomenclature ec 1.-.-.-:
pdb deposition date 2014-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4quqA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4quqA01
2A06E 2DE6D 1NTZE 2B24A 1SQQE 1O7WA 4NB8D 2FYUE 2E74D 4OGQD 5AEUA 2YFLA 2YFJA 2NVGA 2DE5A 4NBED 3TGUE 4NBHA 2GBWA 4NBGA 2FYNC 4H13D 1Z01A 3L75E 1FQTA 2NUMA 3H1KE 4QCKA 3AZCA 3VMIA 4P1CH 2HMMA 4NBBA 2NWFA 1UUWA 2YIUC 1NYKA 1O7MA 1Z02A 2DE5D 1VCKA 3DQYA 2BCCE 4NBHD 3L70E 4NBDA 4H0LD 1ULIA 1UUVA 4P1BH 3H1JE 3VMID 2YVJB 4EMJB 5HL4A 5KKZC 2ZT9D 4NBBD 1Q90C 2B1XA 2QJYC 4QDFA 3VMGD 1EG9A 4QUPA 3GKEA 2HMLA 4HM8A 2CKFA 4PV1D 5BOKA 1WQLA 3EN1A 2BMQA 1KB9E 3CX5E 4QURA 2D2CD 1PPJE 3GCEA 2YFIA 4QDDA 4HM3A 1O7HA 1PP9E 3BCCE 4PD4E 1SQVE 3CWBE 1O7GA 2GBXA 4QDCA 1NTME 3L73E 2DE7A 2E4PA 4NBCA 4NBGD 3N0QA 5CXMA 3GKQA 3GTSA 2QJKC 3H1IE 3GCFA 1P84E 1L0LE 2E75D 2BMRA 3EQQA 1WW9A 4NB8A 4NB9A 1O7NA 2BMOA 3L72E 2HMOA 4HM5A 3C0DA 4NBFA 4H44D 4HM2A 1BE3E 1ZRTE 1SJGA 2JO6A 2XSOA 3VCAA 2XRXA 2DE7D 4U3FE 1BCCE 2NVFA 4HM4A 4NBDD 4QDFB 5KLVE 1ULJA 2NVEA 3GTEA 3H1HE 1SQBE 3L74E 4NB9D 3VCPA 1O7PA 3GOBA 4AIVA 1G8JB 3GL0A 2JZAA 2Q3WA 3FOUA 4NBFD 2IBZE 1KYOE 3VMHA 2HMKA 2QPZA 3GZXA 2XR8A 1JM1A 1NDOA 1NTKE 1Z03A 1RIEA 3GZYA 2HMNA 4HJLA 2DE6A 4NBAA 3GB4A 3L71E 2QJPC 1VM9A 2E76D 3H1LE 1SQPE 4HKVA 2XSHA 1G8KB 4HM6A 4AAYB 5AEWA 4HM7A 1RFSA 3D89A 4QUQA 4NBEA 1EZVE 1VF5D 5KLIC 1L0NE 3GL2A 3VMGA 2I7FA 3CXHE 4NBCD 2E4QA 2NUKA 1SQXE 2ZYLA 4HM0A 4HM1A 3VMHD 2HMJA 4NBAD 1NU1E
chains in the Genus database with same CATH superfamily
2A06E 2DE6D 1NTZE 2B24A 1SQQE 1O7WA 4NB8D 2FYUE 2E74D 4OGQD 5AEUA 2YFLA 2YFJA 2NVGA 2DE5A 4NBED 3TGUE 4NBHA 2GBWA 4NBGA 2FYNC 4H13D 1Z01A 3L75E 1FQTA 2NUMA 3H1KE 4QCKA 3AZCA 3VMIA 4P1CH 2HMMA 4NBBA 2NWFA 1UUWA 2YIUC 1NYKA 1O7MA 1Z02A 2DE5D 1VCKA 3DQYA 2BCCE 4NBHD 3L70E 4NBDA 4H0LD 1ULIA 1UUVA 4P1BH 3H1JE 3VMID 2YVJB 4EMJB 5HL4A 5KKZC 2ZT9D 4NBBD 1Q90C 2B1XA 2QJYC 4QDFA 3VMGD 1EG9A 4QUPA 3GKEA 2HMLA 4HM8A 2CKFA 4PV1D 5BOKA 1WQLA 3EN1A 2BMQA 1KB9E 3CX5E 4QURA 2D2CD 1PPJE 3GCEA 2YFIA 4QDDA 4HM3A 1O7HA 1PP9E 3BCCE 4PD4E 1SQVE 3CWBE 1O7GA 2GBXA 4QDCA 1NTME 3L73E 2DE7A 2E4PA 4NBCA 4NBGD 3N0QA 5CXMA 3GKQA 3GTSA 2QJKC 3H1IE 3GCFA 1P84E 1L0LE 2E75D 2BMRA 3EQQA 1WW9A 4NB8A 4NB9A 1O7NA 2BMOA 3L72E 2HMOA 4HM5A 3C0DA 4NBFA 4H44D 4HM2A 1BE3E 1ZRTE 1SJGA 2JO6A 2XSOA 3VCAA 2XRXA 2DE7D 4U3FE 1BCCE 2NVFA 4HM4A 4NBDD 4QDFB 5KLVE 1ULJA 2NVEA 3GTEA 3H1HE 1SQBE 3L74E 4NB9D 3VCPA 1O7PA 3GOBA 4AIVA 1G8JB 3GL0A 2JZAA 2Q3WA 3FOUA 4NBFD 2IBZE 1KYOE 3VMHA 2HMKA 2QPZA 3GZXA 2XR8A 1JM1A 1NDOA 1NTKE 1Z03A 1RIEA 3GZYA 2HMNA 4HJLA 2DE6A 4NBAA 3GB4A 3L71E 2QJPC 1VM9A 2E76D 3H1LE 1SQPE 4HKVA 2XSHA 1G8KB 4HM6A 4AAYB 5AEWA 4HM7A 1RFSA 3D89A 4QUQA 4NBEA 1EZVE 1VF5D 5KLIC 1L0NE 3GL2A 3VMGA 2I7FA 3CXHE 4NBCD 2E4QA 2NUKA 1SQXE 2ZYLA 4HM0A 4HM1A 3VMHD 2HMJA 4NBAD 1NU1E
chains in the Genus database with same CATH topology
2A06E 2DE6D 1NTZE 2B24A 1SQQE 1O7WA 4NB8D 2FYUE 2E74D 4OGQD 5AEUA 2YFLA 2YFJA 2NVGA 2DE5A 4NBED 3TGUE 4NBHA 2GBWA 4NBGA 2FYNC 4H13D 1Z01A 3L75E 1FQTA 2NUMA 3H1KE 4QCKA 3AZCA 3VMIA 4P1CH 2HMMA 4NBBA 2NWFA 1UUWA 2YIUC 1NYKA 1O7MA 1Z02A 2DE5D 1VCKA 3DQYA 2BCCE 4NBHD 3L70E 4NBDA 4H0LD 1ULIA 1UUVA 4P1BH 3H1JE 3VMID 2YVJB 4EMJB 5HL4A 5KKZC 2ZT9D 4NBBD 1Q90C 2B1XA 2QJYC 4QDFA 3VMGD 1EG9A 4QUPA 3GKEA 2HMLA 4HM8A 2CKFA 4PV1D 5BOKA 1WQLA 3EN1A 2BMQA 1KB9E 3CX5E 4QURA 2D2CD 1PPJE 3GCEA 2YFIA 4QDDA 4HM3A 1O7HA 1PP9E 3BCCE 4PD4E 1SQVE 3CWBE 1O7GA 2GBXA 4QDCA 1NTME 3L73E 2DE7A 2E4PA 4NBCA 4NBGD 3N0QA 5CXMA 3GKQA 3GTSA 2QJKC 3H1IE 3GCFA 1P84E 1L0LE 2E75D 2BMRA 3EQQA 1WW9A 4NB8A 4NB9A 1O7NA 2BMOA 3L72E 2HMOA 4HM5A 3C0DA 4NBFA 4H44D 4HM2A 1BE3E 1ZRTE 1SJGA 2JO6A 2XSOA 3VCAA 2XRXA 2DE7D 4U3FE 1BCCE 2NVFA 4HM4A 4NBDD 4QDFB 5KLVE 1ULJA 2NVEA 3GTEA 3H1HE 1SQBE 3L74E 4NB9D 3VCPA 1O7PA 3GOBA 4AIVA 1G8JB 3GL0A 2JZAA 2Q3WA 3FOUA 4NBFD 2IBZE 1KYOE 3VMHA 2HMKA 2QPZA 3GZXA 2XR8A 1JM1A 1NDOA 1NTKE 1Z03A 1RIEA 3GZYA 2HMNA 4HJLA 2DE6A 4NBAA 3GB4A 3L71E 2QJPC 1VM9A 2E76D 3H1LE 1SQPE 4HKVA 2XSHA 1G8KB 4HM6A 4AAYB 5AEWA 4HM7A 1RFSA 3D89A 4QUQA 4NBEA 1EZVE 1VF5D 5KLIC 1L0NE 3GL2A 3VMGA 2I7FA 3CXHE 4NBCD 2E4QA 2NUKA 1SQXE 2ZYLA 4HM0A 4HM1A 3VMHD 2HMJA 4NBAD 1NU1E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A06 E;  2DE6 D;  1NTZ E;  2B24 A;  1SQQ E;  1O7W A;  4NB8 D;  2FYU E;  2E74 D;  4OGQ D;  5AEU A;  2YFL A;  2YFJ A;  2NVG A;  2DE5 A;  4NBE D;  3TGU E;  4NBH A;  2GBW A;  4NBG A;  2FYN C;  4H13 D;  1Z01 A;  3L75 E;  1FQT A;  2NUM A;  3H1K E;  4QCK A;  3AZC A;  3VMI A;  4P1C H;  2HMM A;  4NBB A;  2NWF A;  1UUW A;  2YIU C;  1NYK A;  1O7M A;  1Z02 A;  2DE5 D;  1VCK A;  3DQY A;  2BCC E;  4NBH D;  3L70 E;  4NBD A;  4H0L D;  1ULI A;  1UUV A;  4P1B H;  3H1J E;  3VMI D;  2YVJ B;  4EMJ B;  5HL4 A;  5KKZ C;  2ZT9 D;  4NBB D;  1Q90 C;  2B1X A;  2QJY C;  4QDF A;  3VMG D;  1EG9 A;  4QUP A;  3GKE A;  2HML A;  4HM8 A;  2CKF A;  4PV1 D;  5BOK A;  1WQL A;  3EN1 A;  2BMQ A;  1KB9 E;  3CX5 E;  4QUR A;  2D2C D;  1PPJ E;  3GCE A;  2YFI A;  4QDD A;  4HM3 A;  1O7H A;  1PP9 E;  3BCC E;  4PD4 E;  1SQV E;  3CWB E;  1O7G A;  2GBX A;  4QDC A;  1NTM E;  3L73 E;  2DE7 A;  2E4P A;  4NBC A;  4NBG D;  3N0Q A;  5CXM A;  3GKQ A;  3GTS A;  2QJK C;  3H1I E;  3GCF A;  1P84 E;  1L0L E;  2E75 D;  2BMR A;  3EQQ A;  1WW9 A;  4NB8 A;  4NB9 A;  1O7N A;  2BMO A;  3L72 E;  2HMO A;  4HM5 A;  3C0D A;  4NBF A;  4H44 D;  4HM2 A;  1BE3 E;  1ZRT E;  1SJG A;  2JO6 A;  2XSO A;  3VCA A;  2XRX A;  2DE7 D;  4U3F E;  1BCC E;  2NVF A;  4HM4 A;  4NBD D;  4QDF B;  5KLV E;  1ULJ A;  2NVE A;  3GTE A;  3H1H E;  1SQB E;  3L74 E;  4NB9 D;  3VCP A;  1O7P A;  3GOB A;  4AIV A;  1G8J B;  3GL0 A;  2JZA A;  2Q3W A;  3FOU A;  4NBF D;  2IBZ E;  1KYO E;  3VMH A;  2HMK A;  2QPZ A;  3GZX A;  2XR8 A;  1JM1 A;  1NDO A;  1NTK E;  1Z03 A;  1RIE A;  3GZY A;  2HMN A;  4HJL A;  2DE6 A;  4NBA A;  3GB4 A;  3L71 E;  2QJP C;  1VM9 A;  2E76 D;  3H1L E;  1SQP E;  4HKV A;  2XSH A;  1G8K B;  4HM6 A;  4AAY B;  5AEW A;  4HM7 A;  1RFS A;  3D89 A;  4QUQ A;  4NBE A;  1EZV E;  1VF5 D;  5KLI C;  1L0N E;  3GL2 A;  3VMG A;  2I7F A;  3CXH E;  4NBC D;  2E4Q A;  2NUK A;  1SQX E;  2ZYL A;  4HM0 A;  4HM1 A;  3VMH D;  2HMJ A;  4NBA D;  1NU1 E; 
#chains in the Genus database with same CATH topology
 2A06 E;  2DE6 D;  1NTZ E;  2B24 A;  1SQQ E;  1O7W A;  4NB8 D;  2FYU E;  2E74 D;  4OGQ D;  5AEU A;  2YFL A;  2YFJ A;  2NVG A;  2DE5 A;  4NBE D;  3TGU E;  4NBH A;  2GBW A;  4NBG A;  2FYN C;  4H13 D;  1Z01 A;  3L75 E;  1FQT A;  2NUM A;  3H1K E;  4QCK A;  3AZC A;  3VMI A;  4P1C H;  2HMM A;  4NBB A;  2NWF A;  1UUW A;  2YIU C;  1NYK A;  1O7M A;  1Z02 A;  2DE5 D;  1VCK A;  3DQY A;  2BCC E;  4NBH D;  3L70 E;  4NBD A;  4H0L D;  1ULI A;  1UUV A;  4P1B H;  3H1J E;  3VMI D;  2YVJ B;  4EMJ B;  5HL4 A;  5KKZ C;  2ZT9 D;  4NBB D;  1Q90 C;  2B1X A;  2QJY C;  4QDF A;  3VMG D;  1EG9 A;  4QUP A;  3GKE A;  2HML A;  4HM8 A;  2CKF A;  4PV1 D;  5BOK A;  1WQL A;  3EN1 A;  2BMQ A;  1KB9 E;  3CX5 E;  4QUR A;  2D2C D;  1PPJ E;  3GCE A;  2YFI A;  4QDD A;  4HM3 A;  1O7H A;  1PP9 E;  3BCC E;  4PD4 E;  1SQV E;  3CWB E;  1O7G A;  2GBX A;  4QDC A;  1NTM E;  3L73 E;  2DE7 A;  2E4P A;  4NBC A;  4NBG D;  3N0Q A;  5CXM A;  3GKQ A;  3GTS A;  2QJK C;  3H1I E;  3GCF A;  1P84 E;  1L0L E;  2E75 D;  2BMR A;  3EQQ A;  1WW9 A;  4NB8 A;  4NB9 A;  1O7N A;  2BMO A;  3L72 E;  2HMO A;  4HM5 A;  3C0D A;  4NBF A;  4H44 D;  4HM2 A;  1BE3 E;  1ZRT E;  1SJG A;  2JO6 A;  2XSO A;  3VCA A;  2XRX A;  2DE7 D;  4U3F E;  1BCC E;  2NVF A;  4HM4 A;  4NBD D;  4QDF B;  5KLV E;  1ULJ A;  2NVE A;  3GTE A;  3H1H E;  1SQB E;  3L74 E;  4NB9 D;  3VCP A;  1O7P A;  3GOB A;  4AIV A;  1G8J B;  3GL0 A;  2JZA A;  2Q3W A;  3FOU A;  4NBF D;  2IBZ E;  1KYO E;  3VMH A;  2HMK A;  2QPZ A;  3GZX A;  2XR8 A;  1JM1 A;  1NDO A;  1NTK E;  1Z03 A;  1RIE A;  3GZY A;  2HMN A;  4HJL A;  2DE6 A;  4NBA A;  3GB4 A;  3L71 E;  2QJP C;  1VM9 A;  2E76 D;  3H1L E;  1SQP E;  4HKV A;  2XSH A;  1G8K B;  4HM6 A;  4AAY B;  5AEW A;  4HM7 A;  1RFS A;  3D89 A;  4QUQ A;  4NBE A;  1EZV E;  1VF5 D;  5KLI C;  1L0N E;  3GL2 A;  3VMG A;  2I7F A;  3CXH E;  4NBC D;  2E4Q A;  2NUK A;  1SQX E;  2ZYL A;  4HM0 A;  4HM1 A;  3VMH D;  2HMJ A;  4NBA D;  1NU1 E; 
#chains in the Genus database with same CATH homology
 2A06 E;  2DE6 D;  1NTZ E;  2B24 A;  1SQQ E;  1O7W A;  4NB8 D;  2FYU E;  2E74 D;  4OGQ D;  5AEU A;  2YFL A;  2YFJ A;  2NVG A;  2DE5 A;  4NBE D;  3TGU E;  4NBH A;  2GBW A;  4NBG A;  2FYN C;  4H13 D;  1Z01 A;  3L75 E;  1FQT A;  2NUM A;  3H1K E;  4QCK A;  3AZC A;  3VMI A;  4P1C H;  2HMM A;  4NBB A;  2NWF A;  1UUW A;  2YIU C;  1NYK A;  1O7M A;  1Z02 A;  2DE5 D;  1VCK A;  3DQY A;  2BCC E;  4NBH D;  3L70 E;  4NBD A;  4H0L D;  1ULI A;  1UUV A;  4P1B H;  3H1J E;  3VMI D;  2YVJ B;  4EMJ B;  5HL4 A;  5KKZ C;  2ZT9 D;  4NBB D;  1Q90 C;  2B1X A;  2QJY C;  4QDF A;  3VMG D;  1EG9 A;  4QUP A;  3GKE A;  2HML A;  4HM8 A;  2CKF A;  4PV1 D;  5BOK A;  1WQL A;  3EN1 A;  2BMQ A;  1KB9 E;  3CX5 E;  4QUR A;  2D2C D;  1PPJ E;  3GCE A;  2YFI A;  4QDD A;  4HM3 A;  1O7H A;  1PP9 E;  3BCC E;  4PD4 E;  1SQV E;  3CWB E;  1O7G A;  2GBX A;  4QDC A;  1NTM E;  3L73 E;  2DE7 A;  2E4P A;  4NBC A;  4NBG D;  3N0Q A;  5CXM A;  3GKQ A;  3GTS A;  2QJK C;  3H1I E;  3GCF A;  1P84 E;  1L0L E;  2E75 D;  2BMR A;  3EQQ A;  1WW9 A;  4NB8 A;  4NB9 A;  1O7N A;  2BMO A;  3L72 E;  2HMO A;  4HM5 A;  3C0D A;  4NBF A;  4H44 D;  4HM2 A;  1BE3 E;  1ZRT E;  1SJG A;  2JO6 A;  2XSO A;  3VCA A;  2XRX A;  2DE7 D;  4U3F E;  1BCC E;  2NVF A;  4HM4 A;  4NBD D;  4QDF B;  5KLV E;  1ULJ A;  2NVE A;  3GTE A;  3H1H E;  1SQB E;  3L74 E;  4NB9 D;  3VCP A;  1O7P A;  3GOB A;  4AIV A;  1G8J B;  3GL0 A;  2JZA A;  2Q3W A;  3FOU A;  4NBF D;  2IBZ E;  1KYO E;  3VMH A;  2HMK A;  2QPZ A;  3GZX A;  2XR8 A;  1JM1 A;  1NDO A;  1NTK E;  1Z03 A;  1RIE A;  3GZY A;  2HMN A;  4HJL A;  2DE6 A;  4NBA A;  3GB4 A;  3L71 E;  2QJP C;  1VM9 A;  2E76 D;  3H1L E;  1SQP E;  4HKV A;  2XSH A;  1G8K B;  4HM6 A;  4AAY B;  5AEW A;  4HM7 A;  1RFS A;  3D89 A;  4QUQ A;  4NBE A;  1EZV E;  1VF5 D;  5KLI C;  1L0N E;  3GL2 A;  3VMG A;  2I7F A;  3CXH E;  4NBC D;  2E4Q A;  2NUK A;  1SQX E;  2ZYL A;  4HM0 A;  4HM1 A;  3VMH D;  2HMJ A;  4NBA D;  1NU1 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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