4QURA

Crystal structure of stachydrine demethylase in complex with cyanide, oxygen, and n-methyl proline in a new orientation
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
415
structure length
415
Chain Sequence
GTENLYFQSMMTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords monoxygenase; demethylase
publication title Tracking photoelectron induced in-crystallo enzyme catalysis
rcsb
source organism Sinorhizobium meliloti 1021
total genus 133
structure length 415
sequence length 415
ec nomenclature ec 1.-.-.-:
pdb deposition date 2014-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4qurA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4qurA01
4H0LD 1NTME 1O7MA 5KLVE 1SQPE 3AZCA 3H1KE 4U3FE 4AAYB 1G8JB 3H1IE 3CX5E 1BCCE 4AIVA 2YFLA 2XRXA 3VMHD 3VMHA 4QDFB 2HMNA 3CWBE 1PPJE 1L0NE 1O7WA 2BCCE 4OGQD 4NBBD 3DQYA 1L0LE 2BMQA 3N0QA 1RIEA 4NBBA 2I7FA 4NB9D 2HMKA 2YIUC 3D89A 4P1BH 4PD4E 4NB9A 2XSOA 3GCFA 1NTZE 4HM2A 1JM1A 4HM7A 1SQVE 2DE5D 3GKQA 5AEUA 2DE5A 1SJGA 1VCKA 2B24A 3L73E 3GTEA 4HM1A 5KKZC 1EZVE 1O7PA 2NVEA 4NBCD 5CXMA 2IBZE 4NBCA 3GZYA 3GL2A 4QDDA 1UUVA 3H1LE 4QDCA 2BMOA 3GTSA 2QJKC 2YVJB 4H13D 1KB9E 4P1CH 2JZAA 3L71E 1Z02A 2E76D 2DE6D 1P84E 4NBGD 2FYNC 4QCKA 1O7HA 4QUPA 5KLIC 2DE6A 4NBGA 2NWFA 2HMJA 3GB4A 4HJLA 1ULIA 4HM8A 4QURA 1Q90C 1FQTA 3VCPA 2NUMA 2HMMA 2XR8A 3EN1A 5AEWA 3VCAA 4NBEA 2E75D 4H44D 1SQQE 1ZRTE 2FYUE 4HM5A 3GZXA 1WW9A 4NBAA 3GCEA 4PV1D 1RFSA 2E4QA 2DE7D 2NVGA 2D2CD 2Q3WA 3L74E 3TGUE 2DE7A 1NTKE 2A06E 1NU1E 3GL0A 3VMGA 4QDFA 3VMID 3VMIA 3BCCE 4NBDD 1UUWA 4NBHD 4NBDA 4NBHA 3L70E 2CKFA 2NUKA 3L72E 2QPZA 1WQLA 4HM3A 1Z03A 1VF5D 2BMRA 3CXHE 4QUQA 4NBED 4EMJB 1SQXE 2E74D 2GBWA 2GBXA 2JO6A 4HKVA 1KYOE 1SQBE 2NVFA 2HMLA 1NYKA 4NB8D 2XSHA 4NBAD 5BOKA 4NB8A 1NDOA 2ZT9D 4NBFD 2HMOA 2YFJA 4NBFA 1G8KB 1O7NA 3C0DA 3EQQA 1BE3E 1O7GA 3H1HE 4HM4A 3GKEA 3VMGD 2B1XA 1Z01A 2ZYLA 1PP9E 4HM0A 3L75E 2YFIA 3H1JE 2QJPC 1ULJA 3FOUA 4HM6A 3GOBA 1VM9A 5HL4A 1EG9A 2E4PA 2QJYC
chains in the Genus database with same CATH superfamily
4H0LD 1NTME 1O7MA 5KLVE 1SQPE 3AZCA 3H1KE 4U3FE 4AAYB 1G8JB 3H1IE 3CX5E 1BCCE 4AIVA 2YFLA 2XRXA 3VMHD 3VMHA 4QDFB 2HMNA 3CWBE 1PPJE 1L0NE 1O7WA 2BCCE 4OGQD 4NBBD 3DQYA 1L0LE 2BMQA 3N0QA 1RIEA 4NBBA 2I7FA 4NB9D 2HMKA 2YIUC 3D89A 4P1BH 4PD4E 4NB9A 2XSOA 3GCFA 1NTZE 4HM2A 1JM1A 4HM7A 1SQVE 2DE5D 3GKQA 5AEUA 2DE5A 1SJGA 1VCKA 2B24A 3L73E 3GTEA 4HM1A 5KKZC 1EZVE 1O7PA 2NVEA 4NBCD 5CXMA 2IBZE 4NBCA 3GZYA 3GL2A 4QDDA 1UUVA 3H1LE 4QDCA 2BMOA 3GTSA 2QJKC 2YVJB 4H13D 1KB9E 4P1CH 2JZAA 3L71E 1Z02A 2E76D 2DE6D 1P84E 4NBGD 2FYNC 4QCKA 1O7HA 4QUPA 5KLIC 2DE6A 4NBGA 2NWFA 2HMJA 3GB4A 4HJLA 1ULIA 4HM8A 4QURA 1Q90C 1FQTA 3VCPA 2NUMA 2HMMA 2XR8A 3EN1A 5AEWA 3VCAA 4NBEA 2E75D 4H44D 1SQQE 1ZRTE 2FYUE 4HM5A 3GZXA 1WW9A 4NBAA 3GCEA 4PV1D 1RFSA 2E4QA 2DE7D 2NVGA 2D2CD 2Q3WA 3L74E 3TGUE 2DE7A 1NTKE 2A06E 1NU1E 3GL0A 3VMGA 4QDFA 3VMID 3VMIA 3BCCE 4NBDD 1UUWA 4NBHD 4NBDA 4NBHA 3L70E 2CKFA 2NUKA 3L72E 2QPZA 1WQLA 4HM3A 1Z03A 1VF5D 2BMRA 3CXHE 4QUQA 4NBED 4EMJB 1SQXE 2E74D 2GBWA 2GBXA 2JO6A 4HKVA 1KYOE 1SQBE 2NVFA 2HMLA 1NYKA 4NB8D 2XSHA 4NBAD 5BOKA 4NB8A 1NDOA 2ZT9D 4NBFD 2HMOA 2YFJA 4NBFA 1G8KB 1O7NA 3C0DA 3EQQA 1BE3E 1O7GA 3H1HE 4HM4A 3GKEA 3VMGD 2B1XA 1Z01A 2ZYLA 1PP9E 4HM0A 3L75E 2YFIA 3H1JE 2QJPC 1ULJA 3FOUA 4HM6A 3GOBA 1VM9A 5HL4A 1EG9A 2E4PA 2QJYC
chains in the Genus database with same CATH topology
4H0LD 1NTME 1O7MA 5KLVE 1SQPE 3AZCA 3H1KE 4U3FE 4AAYB 1G8JB 3H1IE 3CX5E 1BCCE 4AIVA 2YFLA 2XRXA 3VMHD 3VMHA 4QDFB 2HMNA 3CWBE 1PPJE 1L0NE 1O7WA 2BCCE 4OGQD 4NBBD 3DQYA 1L0LE 2BMQA 3N0QA 1RIEA 4NBBA 2I7FA 4NB9D 2HMKA 2YIUC 3D89A 4P1BH 4PD4E 4NB9A 2XSOA 3GCFA 1NTZE 4HM2A 1JM1A 4HM7A 1SQVE 2DE5D 3GKQA 5AEUA 2DE5A 1SJGA 1VCKA 2B24A 3L73E 3GTEA 4HM1A 5KKZC 1EZVE 1O7PA 2NVEA 4NBCD 5CXMA 2IBZE 4NBCA 3GZYA 3GL2A 4QDDA 1UUVA 3H1LE 4QDCA 2BMOA 3GTSA 2QJKC 2YVJB 4H13D 1KB9E 4P1CH 2JZAA 3L71E 1Z02A 2E76D 2DE6D 1P84E 4NBGD 2FYNC 4QCKA 1O7HA 4QUPA 5KLIC 2DE6A 4NBGA 2NWFA 2HMJA 3GB4A 4HJLA 1ULIA 4HM8A 4QURA 1Q90C 1FQTA 3VCPA 2NUMA 2HMMA 2XR8A 3EN1A 5AEWA 3VCAA 4NBEA 2E75D 4H44D 1SQQE 1ZRTE 2FYUE 4HM5A 3GZXA 1WW9A 4NBAA 3GCEA 4PV1D 1RFSA 2E4QA 2DE7D 2NVGA 2D2CD 2Q3WA 3L74E 3TGUE 2DE7A 1NTKE 2A06E 1NU1E 3GL0A 3VMGA 4QDFA 3VMID 3VMIA 3BCCE 4NBDD 1UUWA 4NBHD 4NBDA 4NBHA 3L70E 2CKFA 2NUKA 3L72E 2QPZA 1WQLA 4HM3A 1Z03A 1VF5D 2BMRA 3CXHE 4QUQA 4NBED 4EMJB 1SQXE 2E74D 2GBWA 2GBXA 2JO6A 4HKVA 1KYOE 1SQBE 2NVFA 2HMLA 1NYKA 4NB8D 2XSHA 4NBAD 5BOKA 4NB8A 1NDOA 2ZT9D 4NBFD 2HMOA 2YFJA 4NBFA 1G8KB 1O7NA 3C0DA 3EQQA 1BE3E 1O7GA 3H1HE 4HM4A 3GKEA 3VMGD 2B1XA 1Z01A 2ZYLA 1PP9E 4HM0A 3L75E 2YFIA 3H1JE 2QJPC 1ULJA 3FOUA 4HM6A 3GOBA 1VM9A 5HL4A 1EG9A 2E4PA 2QJYC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H0L D;  1NTM E;  1O7M A;  5KLV E;  1SQP E;  3AZC A;  3H1K E;  4U3F E;  4AAY B;  1G8J B;  3H1I E;  3CX5 E;  1BCC E;  4AIV A;  2YFL A;  2XRX A;  3VMH D;  3VMH A;  4QDF B;  2HMN A;  3CWB E;  1PPJ E;  1L0N E;  1O7W A;  2BCC E;  4OGQ D;  4NBB D;  3DQY A;  1L0L E;  2BMQ A;  3N0Q A;  1RIE A;  4NBB A;  2I7F A;  4NB9 D;  2HMK A;  2YIU C;  3D89 A;  4P1B H;  4PD4 E;  4NB9 A;  2XSO A;  3GCF A;  1NTZ E;  4HM2 A;  1JM1 A;  4HM7 A;  1SQV E;  2DE5 D;  3GKQ A;  5AEU A;  2DE5 A;  1SJG A;  1VCK A;  2B24 A;  3L73 E;  3GTE A;  4HM1 A;  5KKZ C;  1EZV E;  1O7P A;  2NVE A;  4NBC D;  5CXM A;  2IBZ E;  4NBC A;  3GZY A;  3GL2 A;  4QDD A;  1UUV A;  3H1L E;  4QDC A;  2BMO A;  3GTS A;  2QJK C;  2YVJ B;  4H13 D;  1KB9 E;  4P1C H;  2JZA A;  3L71 E;  1Z02 A;  2E76 D;  2DE6 D;  1P84 E;  4NBG D;  2FYN C;  4QCK A;  1O7H A;  4QUP A;  5KLI C;  2DE6 A;  4NBG A;  2NWF A;  2HMJ A;  3GB4 A;  4HJL A;  1ULI A;  4HM8 A;  4QUR A;  1Q90 C;  1FQT A;  3VCP A;  2NUM A;  2HMM A;  2XR8 A;  3EN1 A;  5AEW A;  3VCA A;  4NBE A;  2E75 D;  4H44 D;  1SQQ E;  1ZRT E;  2FYU E;  4HM5 A;  3GZX A;  1WW9 A;  4NBA A;  3GCE A;  4PV1 D;  1RFS A;  2E4Q A;  2DE7 D;  2NVG A;  2D2C D;  2Q3W A;  3L74 E;  3TGU E;  2DE7 A;  1NTK E;  2A06 E;  1NU1 E;  3GL0 A;  3VMG A;  4QDF A;  3VMI D;  3VMI A;  3BCC E;  4NBD D;  1UUW A;  4NBH D;  4NBD A;  4NBH A;  3L70 E;  2CKF A;  2NUK A;  3L72 E;  2QPZ A;  1WQL A;  4HM3 A;  1Z03 A;  1VF5 D;  2BMR A;  3CXH E;  4QUQ A;  4NBE D;  4EMJ B;  1SQX E;  2E74 D;  2GBW A;  2GBX A;  2JO6 A;  4HKV A;  1KYO E;  1SQB E;  2NVF A;  2HML A;  1NYK A;  4NB8 D;  2XSH A;  4NBA D;  5BOK A;  4NB8 A;  1NDO A;  2ZT9 D;  4NBF D;  2HMO A;  2YFJ A;  4NBF A;  1G8K B;  1O7N A;  3C0D A;  3EQQ A;  1BE3 E;  1O7G A;  3H1H E;  4HM4 A;  3GKE A;  3VMG D;  2B1X A;  1Z01 A;  2ZYL A;  1PP9 E;  4HM0 A;  3L75 E;  2YFI A;  3H1J E;  2QJP C;  1ULJ A;  3FOU A;  4HM6 A;  3GOB A;  1VM9 A;  5HL4 A;  1EG9 A;  2E4P A;  2QJY C; 
#chains in the Genus database with same CATH topology
 4H0L D;  1NTM E;  1O7M A;  5KLV E;  1SQP E;  3AZC A;  3H1K E;  4U3F E;  4AAY B;  1G8J B;  3H1I E;  3CX5 E;  1BCC E;  4AIV A;  2YFL A;  2XRX A;  3VMH D;  3VMH A;  4QDF B;  2HMN A;  3CWB E;  1PPJ E;  1L0N E;  1O7W A;  2BCC E;  4OGQ D;  4NBB D;  3DQY A;  1L0L E;  2BMQ A;  3N0Q A;  1RIE A;  4NBB A;  2I7F A;  4NB9 D;  2HMK A;  2YIU C;  3D89 A;  4P1B H;  4PD4 E;  4NB9 A;  2XSO A;  3GCF A;  1NTZ E;  4HM2 A;  1JM1 A;  4HM7 A;  1SQV E;  2DE5 D;  3GKQ A;  5AEU A;  2DE5 A;  1SJG A;  1VCK A;  2B24 A;  3L73 E;  3GTE A;  4HM1 A;  5KKZ C;  1EZV E;  1O7P A;  2NVE A;  4NBC D;  5CXM A;  2IBZ E;  4NBC A;  3GZY A;  3GL2 A;  4QDD A;  1UUV A;  3H1L E;  4QDC A;  2BMO A;  3GTS A;  2QJK C;  2YVJ B;  4H13 D;  1KB9 E;  4P1C H;  2JZA A;  3L71 E;  1Z02 A;  2E76 D;  2DE6 D;  1P84 E;  4NBG D;  2FYN C;  4QCK A;  1O7H A;  4QUP A;  5KLI C;  2DE6 A;  4NBG A;  2NWF A;  2HMJ A;  3GB4 A;  4HJL A;  1ULI A;  4HM8 A;  4QUR A;  1Q90 C;  1FQT A;  3VCP A;  2NUM A;  2HMM A;  2XR8 A;  3EN1 A;  5AEW A;  3VCA A;  4NBE A;  2E75 D;  4H44 D;  1SQQ E;  1ZRT E;  2FYU E;  4HM5 A;  3GZX A;  1WW9 A;  4NBA A;  3GCE A;  4PV1 D;  1RFS A;  2E4Q A;  2DE7 D;  2NVG A;  2D2C D;  2Q3W A;  3L74 E;  3TGU E;  2DE7 A;  1NTK E;  2A06 E;  1NU1 E;  3GL0 A;  3VMG A;  4QDF A;  3VMI D;  3VMI A;  3BCC E;  4NBD D;  1UUW A;  4NBH D;  4NBD A;  4NBH A;  3L70 E;  2CKF A;  2NUK A;  3L72 E;  2QPZ A;  1WQL A;  4HM3 A;  1Z03 A;  1VF5 D;  2BMR A;  3CXH E;  4QUQ A;  4NBE D;  4EMJ B;  1SQX E;  2E74 D;  2GBW A;  2GBX A;  2JO6 A;  4HKV A;  1KYO E;  1SQB E;  2NVF A;  2HML A;  1NYK A;  4NB8 D;  2XSH A;  4NBA D;  5BOK A;  4NB8 A;  1NDO A;  2ZT9 D;  4NBF D;  2HMO A;  2YFJ A;  4NBF A;  1G8K B;  1O7N A;  3C0D A;  3EQQ A;  1BE3 E;  1O7G A;  3H1H E;  4HM4 A;  3GKE A;  3VMG D;  2B1X A;  1Z01 A;  2ZYL A;  1PP9 E;  4HM0 A;  3L75 E;  2YFI A;  3H1J E;  2QJP C;  1ULJ A;  3FOU A;  4HM6 A;  3GOB A;  1VM9 A;  5HL4 A;  1EG9 A;  2E4P A;  2QJY C; 
#chains in the Genus database with same CATH homology
 4H0L D;  1NTM E;  1O7M A;  5KLV E;  1SQP E;  3AZC A;  3H1K E;  4U3F E;  4AAY B;  1G8J B;  3H1I E;  3CX5 E;  1BCC E;  4AIV A;  2YFL A;  2XRX A;  3VMH D;  3VMH A;  4QDF B;  2HMN A;  3CWB E;  1PPJ E;  1L0N E;  1O7W A;  2BCC E;  4OGQ D;  4NBB D;  3DQY A;  1L0L E;  2BMQ A;  3N0Q A;  1RIE A;  4NBB A;  2I7F A;  4NB9 D;  2HMK A;  2YIU C;  3D89 A;  4P1B H;  4PD4 E;  4NB9 A;  2XSO A;  3GCF A;  1NTZ E;  4HM2 A;  1JM1 A;  4HM7 A;  1SQV E;  2DE5 D;  3GKQ A;  5AEU A;  2DE5 A;  1SJG A;  1VCK A;  2B24 A;  3L73 E;  3GTE A;  4HM1 A;  5KKZ C;  1EZV E;  1O7P A;  2NVE A;  4NBC D;  5CXM A;  2IBZ E;  4NBC A;  3GZY A;  3GL2 A;  4QDD A;  1UUV A;  3H1L E;  4QDC A;  2BMO A;  3GTS A;  2QJK C;  2YVJ B;  4H13 D;  1KB9 E;  4P1C H;  2JZA A;  3L71 E;  1Z02 A;  2E76 D;  2DE6 D;  1P84 E;  4NBG D;  2FYN C;  4QCK A;  1O7H A;  4QUP A;  5KLI C;  2DE6 A;  4NBG A;  2NWF A;  2HMJ A;  3GB4 A;  4HJL A;  1ULI A;  4HM8 A;  4QUR A;  1Q90 C;  1FQT A;  3VCP A;  2NUM A;  2HMM A;  2XR8 A;  3EN1 A;  5AEW A;  3VCA A;  4NBE A;  2E75 D;  4H44 D;  1SQQ E;  1ZRT E;  2FYU E;  4HM5 A;  3GZX A;  1WW9 A;  4NBA A;  3GCE A;  4PV1 D;  1RFS A;  2E4Q A;  2DE7 D;  2NVG A;  2D2C D;  2Q3W A;  3L74 E;  3TGU E;  2DE7 A;  1NTK E;  2A06 E;  1NU1 E;  3GL0 A;  3VMG A;  4QDF A;  3VMI D;  3VMI A;  3BCC E;  4NBD D;  1UUW A;  4NBH D;  4NBD A;  4NBH A;  3L70 E;  2CKF A;  2NUK A;  3L72 E;  2QPZ A;  1WQL A;  4HM3 A;  1Z03 A;  1VF5 D;  2BMR A;  3CXH E;  4QUQ A;  4NBE D;  4EMJ B;  1SQX E;  2E74 D;  2GBW A;  2GBX A;  2JO6 A;  4HKV A;  1KYO E;  1SQB E;  2NVF A;  2HML A;  1NYK A;  4NB8 D;  2XSH A;  4NBA D;  5BOK A;  4NB8 A;  1NDO A;  2ZT9 D;  4NBF D;  2HMO A;  2YFJ A;  4NBF A;  1G8K B;  1O7N A;  3C0D A;  3EQQ A;  1BE3 E;  1O7G A;  3H1H E;  4HM4 A;  3GKE A;  3VMG D;  2B1X A;  1Z01 A;  2ZYL A;  1PP9 E;  4HM0 A;  3L75 E;  2YFI A;  3H1J E;  2QJP C;  1ULJ A;  3FOU A;  4HM6 A;  3GOB A;  1VM9 A;  5HL4 A;  1EG9 A;  2E4P A;  2QJY C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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