4R1BA

Crystal structure of 3d7 strain plasmodium falciparum ama1
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
331
structure length
282
Chain Sequence
NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIISNTTFLTPVATGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKLTDYEKIKEGFKNYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords Apical membrane antigen 1, AMA1
publication title Structure and Dynamics of Apical Membrane Antigen 1 from Plasmodium falciparum FVO.
pubmed doi rcsb
source organism Plasmodium falciparum 3d7
total genus 85
structure length 282
sequence length 331
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4r1bA01
2HGFA 2Z8WA 5CT2A 2Q8AA 4APMA 2YIOA 1GMNA 2Y8RA 1W81A 3HMRA 5CT3A 2X2ZA 2YILA 3HN4A 3ZWZA 1W8KA 4APLA 5I25A 4Z0EA 1I8NA 1GP9A 4IUAA 5CSQA 3SP8A 5CP9A 3ZLEA 1GMOA 5CT1A 5CS1A 2J8JA 4R1AA 5CS9A 3HMSA 3SRJA 5CS5A 4Z09A 4UAOA 5CS3A 1HKYA 3HMTA 5COEA 2J8LA 4A5TS 1BHTA 2Z8VA 4R1BA 2QJ2A 1NK1A 4Z0FA 2LL3A 4R1CA 2LL4M 4R19A 3MKPA 2K13X 5EOKA 4Z0DA 5EODA 4DURA 2YIPA 3SRIA 4UV6A 1YXEA 1Z40A 2Q8BA 2QJ4A 2F83A
chains in the Genus database with same CATH superfamily
2HGFA 2Z8WA 5CT2A 2Q8AA 4APMA 2YIOA 1GMNA 2Y8RA 1W81A 3HMRA 5CT3A 2X2ZA 2YILA 3HN4A 3ZWZA 1W8KA 4APLA 5I25A 2KL5A 4Z0EA 1I8NA 1GP9A 4IUAA 5CSQA 3SP8A 5CP9A 4YIVA 3ZLEA 1GMOA 5CT1A 5CS1A 2J8JA 4R1AA 5CS9A 4YIZA 3HMSA 3SRJA 5CS5A 4Z09A 4UAOA 5CS3A 1HKYA 3HMTA 5COEA 2J8LA 4A5TS 1BHTA 2Z8VA 4R1BA 2QJ2A 1NK1A 4Z0FA 2LL3A 4R1CA 2LL4M 4R19A 3MKPA 2K13X 5EOKA 4Z0DA 5EODA 4DURA 2YIPA 3SRIA 4UV6A 1YXEA 1Z40A 2Q8BA 2QJ4A 2F83A
chains in the Genus database with same CATH topology
2HGFA 2Z8WA 5CT2A 2Q8AA 4APMA 2YIOA 1GMNA 2Y8RA 1W81A 3HMRA 5CT3A 2X2ZA 2YILA 3HN4A 3ZWZA 1W8KA 4APLA 5I25A 2KL5A 4Z0EA 1I8NA 1GP9A 4IUAA 5CSQA 3SP8A 5CP9A 4YIVA 3ZLEA 1GMOA 5CT1A 5CS1A 2J8JA 4R1AA 5CS9A 4YIZA 3HMSA 3SRJA 5CS5A 4Z09A 4UAOA 5CS3A 1HKYA 3HMTA 5COEA 2J8LA 4A5TS 1BHTA 2Z8VA 4R1BA 2QJ2A 1NK1A 4Z0FA 2LL3A 4R1CA 2LL4M 4R19A 3MKPA 2K13X 5EOKA 4Z0DA 5EODA 4DURA 2YIPA 3SRIA 4UV6A 1YXEA 1Z40A 2Q8BA 2QJ4A 2F83A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HGF A;  2Z8W A;  5CT2 A;  2Q8A A;  4APM A;  2YIO A;  1GMN A;  2Y8R A;  1W81 A;  3HMR A;  5CT3 A;  2X2Z A;  2YIL A;  3HN4 A;  3ZWZ A;  1W8K A;  4APL A;  5I25 A;  4Z0E A;  1I8N A;  1GP9 A;  4IUA A;  5CSQ A;  3SP8 A;  5CP9 A;  3ZLE A;  1GMO A;  5CT1 A;  5CS1 A;  2J8J A;  4R1A A;  5CS9 A;  3HMS A;  3SRJ A;  5CS5 A;  4Z09 A;  4UAO A;  5CS3 A;  1HKY A;  3HMT A;  5COE A;  2J8L A;  4A5T S;  1BHT A;  2Z8V A;  4R1B A;  2QJ2 A;  1NK1 A;  4Z0F A;  2LL3 A;  4R1C A;  2LL4 M;  4R19 A;  3MKP A;  2K13 X;  5EOK A;  4Z0D A;  5EOD A;  4DUR A;  2YIP A;  3SRI A;  4UV6 A;  1YXE A;  1Z40 A;  2Q8B A;  2QJ4 A;  2F83 A; 
#chains in the Genus database with same CATH topology
 2HGF A;  2Z8W A;  5CT2 A;  2Q8A A;  4APM A;  2YIO A;  1GMN A;  2Y8R A;  1W81 A;  3HMR A;  5CT3 A;  2X2Z A;  2YIL A;  3HN4 A;  3ZWZ A;  1W8K A;  4APL A;  5I25 A;  2KL5 A;  4Z0E A;  1I8N A;  1GP9 A;  4IUA A;  5CSQ A;  3SP8 A;  5CP9 A;  4YIV A;  3ZLE A;  1GMO A;  5CT1 A;  5CS1 A;  2J8J A;  4R1A A;  5CS9 A;  4YIZ A;  3HMS A;  3SRJ A;  5CS5 A;  4Z09 A;  4UAO A;  5CS3 A;  1HKY A;  3HMT A;  5COE A;  2J8L A;  4A5T S;  1BHT A;  2Z8V A;  4R1B A;  2QJ2 A;  1NK1 A;  4Z0F A;  2LL3 A;  4R1C A;  2LL4 M;  4R19 A;  3MKP A;  2K13 X;  5EOK A;  4Z0D A;  5EOD A;  4DUR A;  2YIP A;  3SRI A;  4UV6 A;  1YXE A;  1Z40 A;  2Q8B A;  2QJ4 A;  2F83 A; 
#chains in the Genus database with same CATH homology
 2HGF A;  2Z8W A;  5CT2 A;  2Q8A A;  4APM A;  2YIO A;  1GMN A;  2Y8R A;  1W81 A;  3HMR A;  5CT3 A;  2X2Z A;  2YIL A;  3HN4 A;  3ZWZ A;  1W8K A;  4APL A;  5I25 A;  2KL5 A;  4Z0E A;  1I8N A;  1GP9 A;  4IUA A;  5CSQ A;  3SP8 A;  5CP9 A;  4YIV A;  3ZLE A;  1GMO A;  5CT1 A;  5CS1 A;  2J8J A;  4R1A A;  5CS9 A;  4YIZ A;  3HMS A;  3SRJ A;  5CS5 A;  4Z09 A;  4UAO A;  5CS3 A;  1HKY A;  3HMT A;  5COE A;  2J8L A;  4A5T S;  1BHT A;  2Z8V A;  4R1B A;  2QJ2 A;  1NK1 A;  4Z0F A;  2LL3 A;  4R1C A;  2LL4 M;  4R19 A;  3MKP A;  2K13 X;  5EOK A;  4Z0D A;  5EOD A;  4DUR A;  2YIP A;  3SRI A;  4UV6 A;  1YXE A;  1Z40 A;  2Q8B A;  2QJ4 A;  2F83 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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