4R28A

Mspji restriction endonuclease in complex with 27-mer oligonucleotide
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
449
structure length
449
Chain Sequence
IAWAASAEVANKPRLVFVGDELRYAQGANQRDVELDGFVNYHWLTSPGGLGLPKVMLEAGINAPAEVVGPDRSRRALIAIRSSPWKAGHETNPWHDEFDLDHGHVRYFGDHKPSTVGLPGETKGNRLLLEAARLHAGTTREERLLAPPLFLFRAVTVHRAGRAVVKGHVEFCGAAIIERLEHVVQRDPETGRSFPNLSLDLAVVSGGEIDGVDFRWIDDRRNAALAAGETLRHAPESWIRWVRQGRLAIPGIRRRVLASAVQSSKEQQPASGSAEAATLQTLYKFYDGRKHAFELLASRVAAEVFRESGARYKEGWLSRSSGDGGVDFIGRIDMGSLKASTPVVVLGQAKCIQPTSSVSPEQVARVVARLRRGWIGVYVTTGSFSRQAQVEIIDDQYPVVLIAGGTLAATVRRMVQANYGGDLDALLASTVDEYGAAVTHRRPEEVISL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Mycobacterium sp. jls
publication title Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.
pubmed doi rcsb
molecule keywords Restriction endonuclease
total genus 90
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04471 Mrr_cat Restriction endonuclease
A PF18062 RE_AspBHI_N Restriction endonuclease AspBHI N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.20 Mainly Beta Roll PUA domain-like PUA domain-like 4r28A01
3.40.91.100 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4r28A02
4RZLA 4F0PA 4OC8A 4F0QA 4R28A
chains in the Genus database with same CATH superfamily
3BI7A 1KNVA 4AWKA 4CHCA 3HW4A 2PFJA 3DVOA 5CGVA 5JHTA 3WVHA 3ODHA 3CAEA 5CL0A 3MQYA 2P0JA 1M0IA 3WVGA 4AVQA 4E5FA 3OLNA 1M0DA 4AVLA 4CGXA 4ZHZA 1BAMA 3Q0BX 2ZO2B 3DWHA 1D2IA 2E52A 4PW7A 4CGSA 3CLZA 4F0QA 5DESA 5I13A 3BAMA 4AVGA 5FDGA 3Q0CA 1FOKA 4AWMA 4PW6A 3V20A 3F8JB 1BHMA 5D8UA 4R28A 2XI5A 5CZNA 3WVPA 3Q0FA 5D4GA 2ZKDA 3HW3A 5FDDA 3EBJA 4YYLA 4NJ5A 5DBSA 2XI7A 2ZKFA 1VRRA 1FZRA 4E5LA 3Q0DA 3WVIA 4ZI0A 5EGAA 4YGIA 2EWFA 2FQZA 2P14A 3A4KA 3V21A 2ZO1B 4PW5A 4ZQQA 1SDOA 5D9JA 3DPGA 3BM3A 4NFZA 3N78A 5D42A 3F8IA 2BAMA 3DW9A 2ZO0B 3WVKA 4RZLA 3N7BA 4E5GA 1ES8A 5JHVA 4E5JA 4AWFA 3MQ6A 2PB7A 4E5HA 4AWGA 2ZKEA 1ESGA 2GB7A 2FOKA 5CCYA 4F0PA 4E5EA 4OC8A 2ZKGA 3FDEA 4AWHA 3HW6A 1DC1A 3V1ZA 1DFMA 3HW5A 4E5IA 1CFRA 5DEBA 5D2OA
chains in the Genus database with same CATH topology
1KNVA 4AWKA 4CHCA 3HW4A 2PFJA 3DVOA 5CGVA 5JHTA 3WVHA 3ODHA 3CAEA 5CL0A 3MQYA 2P0JA 1M0IA 3WVGA 4AVQA 4E5FA 1M0DA 4AVLA 4CGXA 4ZHZA 1BAMA 3Q0BX 1D2IA 2E52A 4CGSA 4F0QA 5DESA 5I13A 3BAMA 4AVGA 5FDGA 3Q0CA 1FOKA 4AWMA 3V20A 1BHMA 5D8UA 4R28A 2XI5A 5CZNA 3WVPA 3Q0FA 5D4GA 3HW3A 5FDDA 3EBJA 4YYLA 5DBSA 2XI7A 1VRRA 1FZRA 4E5LA 3Q0DA 3WVIA 4ZI0A 5EGAA 4YGIA 2EWFA 2FQZA 2P14A 3A4KA 3V21A 4ZQQA 1SDOA 5D9JA 3DPGA 3BM3A 4NFZA 3N78A 5D42A 2BAMA 3DW9A 3WVKA 4RZLA 3N7BA 4E5GA 1ES8A 5JHVA 4E5JA 4AWFA 3MQ6A 4E5HA 4AWGA 1ESGA 2GB7A 2FOKA 5CCYA 4F0PA 4E5EA 4OC8A 4AWHA 3HW6A 1DC1A 3V1ZA 1DFMA 3HW5A 4E5IA 1CFRA 5DEBA 5D2OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RZL A;  4F0P A;  4OC8 A;  4F0Q A;  4R28 A; 
#chains in the Genus database with same CATH topology
 3BI7 A;  1KNV A;  4AWK A;  4CHC A;  3HW4 A;  2PFJ A;  3DVO A;  5CGV A;  5JHT A;  3WVH A;  3ODH A;  3CAE A;  5CL0 A;  3MQY A;  2P0J A;  1M0I A;  3WVG A;  4AVQ A;  4E5F A;  3OLN A;  1M0D A;  4AVL A;  4CGX A;  4ZHZ A;  1BAM A;  3Q0B X;  2ZO2 B;  3DWH A;  1D2I A;  2E52 A;  4PW7 A;  4CGS A;  3CLZ A;  4F0Q A;  5DES A;  5I13 A;  3BAM A;  4AVG A;  5FDG A;  3Q0C A;  1FOK A;  4AWM A;  4PW6 A;  3V20 A;  3F8J B;  1BHM A;  5D8U A;  4R28 A;  2XI5 A;  5CZN A;  3WVP A;  3Q0F A;  5D4G A;  2ZKD A;  3HW3 A;  5FDD A;  3EBJ A;  4YYL A;  4NJ5 A;  5DBS A;  2XI7 A;  2ZKF A;  1VRR A;  1FZR A;  4E5L A;  3Q0D A;  3WVI A;  4ZI0 A;  5EGA A;  4YGI A;  2EWF A;  2FQZ A;  2P14 A;  3A4K A;  3V21 A;  2ZO1 B;  4PW5 A;  4ZQQ A;  1SDO A;  5D9J A;  3DPG A;  3BM3 A;  4NFZ A;  3N78 A;  5D42 A;  3F8I A;  2BAM A;  3DW9 A;  2ZO0 B;  3WVK A;  4RZL A;  3N7B A;  4E5G A;  1ES8 A;  5JHV A;  4E5J A;  4AWF A;  3MQ6 A;  2PB7 A;  4E5H A;  4AWG A;  2ZKE A;  1ESG A;  2GB7 A;  2FOK A;  5CCY A;  4F0P A;  4E5E A;  4OC8 A;  2ZKG A;  3FDE A;  4AWH A;  3HW6 A;  1DC1 A;  3V1Z A;  1DFM A;  3HW5 A;  4E5I A;  1CFR A;  5DEB A;  5D2O A; 
#chains in the Genus database with same CATH homology
 1KNV A;  4AWK A;  4CHC A;  3HW4 A;  2PFJ A;  3DVO A;  5CGV A;  5JHT A;  3WVH A;  3ODH A;  3CAE A;  5CL0 A;  3MQY A;  2P0J A;  1M0I A;  3WVG A;  4AVQ A;  4E5F A;  1M0D A;  4AVL A;  4CGX A;  4ZHZ A;  1BAM A;  3Q0B X;  1D2I A;  2E52 A;  4CGS A;  4F0Q A;  5DES A;  5I13 A;  3BAM A;  4AVG A;  5FDG A;  3Q0C A;  1FOK A;  4AWM A;  3V20 A;  1BHM A;  5D8U A;  4R28 A;  2XI5 A;  5CZN A;  3WVP A;  3Q0F A;  5D4G A;  3HW3 A;  5FDD A;  3EBJ A;  4YYL A;  5DBS A;  2XI7 A;  1VRR A;  1FZR A;  4E5L A;  3Q0D A;  3WVI A;  4ZI0 A;  5EGA A;  4YGI A;  2EWF A;  2FQZ A;  2P14 A;  3A4K A;  3V21 A;  4ZQQ A;  1SDO A;  5D9J A;  3DPG A;  3BM3 A;  4NFZ A;  3N78 A;  5D42 A;  2BAM A;  3DW9 A;  3WVK A;  4RZL A;  3N7B A;  4E5G A;  1ES8 A;  5JHV A;  4E5J A;  4AWF A;  3MQ6 A;  4E5H A;  4AWG A;  1ESG A;  2GB7 A;  2FOK A;  5CCY A;  4F0P A;  4E5E A;  4OC8 A;  4AWH A;  3HW6 A;  1DC1 A;  3V1Z A;  1DFM A;  3HW5 A;  4E5I A;  1CFR A;  5DEB A;  5D2O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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