4R28A

Mspji restriction endonuclease in complex with 27-mer oligonucleotide
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
449
structure length
449
Chain Sequence
IAWAASAEVANKPRLVFVGDELRYAQGANQRDVELDGFVNYHWLTSPGGLGLPKVMLEAGINAPAEVVGPDRSRRALIAIRSSPWKAGHETNPWHDEFDLDHGHVRYFGDHKPSTVGLPGETKGNRLLLEAARLHAGTTREERLLAPPLFLFRAVTVHRAGRAVVKGHVEFCGAAIIERLEHVVQRDPETGRSFPNLSLDLAVVSGGEIDGVDFRWIDDRRNAALAAGETLRHAPESWIRWVRQGRLAIPGIRRRVLASAVQSSKEQQPASGSAEAATLQTLYKFYDGRKHAFELLASRVAAEVFRESGARYKEGWLSRSSGDGGVDFIGRIDMGSLKASTPVVVLGQAKCIQPTSSVSPEQVARVVARLRRGWIGVYVTTGSFSRQAQVEIIDDQYPVVLIAGGTLAATVRRMVQANYGGDLDALLASTVDEYGAAVTHRRPEEVISL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords Restriction endonuclease
publication title Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.
pubmed doi rcsb
source organism Mycobacterium sp. jls
total genus 90
structure length 449
sequence length 449
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04471 Mrr_cat Restriction endonuclease
A PF18062 RE_AspBHI_N Restriction endonuclease AspBHI N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.20 Mainly Beta Roll PUA domain-like PUA domain-like 4r28A01
3.40.91.100 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4r28A02
4F0QA 4RZLA 4OC8A 4F0PA 4R28A
chains in the Genus database with same CATH superfamily
3HW6A 4E5EA 5JHVA 3MQYA 4E5FA 2P0JA 4E5GA 5FDGA 2PFJA 5D42A 3V20A 3Q0FA 3Q0CA 3FDEA 2EWFA 4AWMA 1DC1A 3BM3A 4AVGA 3N7BA 3OLNA 5I13A 1D2IA 4ZI0A 1ES8A 3WVIA 3MQ6A 2FQZA 1CFRA 1ESGA 1M0DA 3DW9A 5D9JA 4E5LA 2XI5A 4E5IA 1FOKA 3Q0BX 3N78A 3WVPA 4NJ5A 5CZNA 5CCYA 2E52A 3DPGA 3BAMA 3BI7A 4OC8A 1SDOA 2GB7A 3DWHA 3WVHA 3CAEA 3HW4A 4PW6A 4E5JA 4CGXA 2XI7A 5DBSA 2ZKGA 2ZO2B 4F0PA 3WVKA 2ZKDA 3A4KA 4E5HA 3V1ZA 5JHTA 3EBJA 1BAMA 4AWHA 2ZO1B 4CHCA 3WVGA 4AWGA 3V21A 4ZHZA 5D8UA 2ZKEA 3ODHA 3CLZA 3DVOA 1BHMA 4AVLA 5DEBA 5D4GA 1FZRA 4F0QA 4AVQA 1M0IA 3HW3A 2P14A 4R28A 3F8JB 2PB7A 4YYLA 1DFMA 4YGIA 4NFZA 2ZKFA 4AWFA 1KNVA 5DESA 3F8IA 2FOKA 2BAMA 3HW5A 4ZQQA 2ZO0B 5EGAA 4CGSA 3Q0DA 4PW7A 4RZLA 5D2OA 4PW5A 5CL0A 1VRRA 5FDDA 4AWKA 5CGVA
chains in the Genus database with same CATH topology
3HW6A 4E5EA 5JHVA 3MQYA 4E5FA 2P0JA 4E5GA 5FDGA 2PFJA 5D42A 3V20A 3Q0FA 3Q0CA 2EWFA 4AWMA 1DC1A 3BM3A 4AVGA 3N7BA 1D2IA 5I13A 4ZI0A 1ES8A 3WVIA 3MQ6A 2FQZA 1CFRA 1ESGA 1M0DA 3DW9A 5D9JA 4E5LA 2XI5A 4E5IA 1FOKA 3Q0BX 3N78A 3WVPA 5CZNA 5CCYA 2E52A 3DPGA 3BAMA 4OC8A 1SDOA 2GB7A 3WVHA 3CAEA 3HW4A 4E5JA 4CGXA 2XI7A 5DBSA 4F0PA 3WVKA 3A4KA 4E5HA 3V1ZA 5JHTA 3EBJA 1BAMA 4AWHA 4CHCA 3WVGA 4AWGA 3V21A 4ZHZA 5D8UA 3ODHA 3DVOA 1BHMA 4AVLA 5DEBA 5D4GA 1FZRA 4F0QA 4AVQA 1M0IA 3HW3A 2P14A 4R28A 4YYLA 1DFMA 4YGIA 4NFZA 4AWFA 1KNVA 5DESA 2FOKA 2BAMA 3HW5A 4ZQQA 5EGAA 4CGSA 3Q0DA 4RZLA 5D2OA 5CL0A 1VRRA 5FDDA 4AWKA 5CGVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0Q A;  4RZL A;  4OC8 A;  4F0P A;  4R28 A; 
#chains in the Genus database with same CATH topology
 3HW6 A;  4E5E A;  5JHV A;  3MQY A;  4E5F A;  2P0J A;  4E5G A;  5FDG A;  2PFJ A;  5D42 A;  3V20 A;  3Q0F A;  3Q0C A;  3FDE A;  2EWF A;  4AWM A;  1DC1 A;  3BM3 A;  4AVG A;  3N7B A;  3OLN A;  5I13 A;  1D2I A;  4ZI0 A;  1ES8 A;  3WVI A;  3MQ6 A;  2FQZ A;  1CFR A;  1ESG A;  1M0D A;  3DW9 A;  5D9J A;  4E5L A;  2XI5 A;  4E5I A;  1FOK A;  3Q0B X;  3N78 A;  3WVP A;  4NJ5 A;  5CZN A;  5CCY A;  2E52 A;  3DPG A;  3BAM A;  3BI7 A;  4OC8 A;  1SDO A;  2GB7 A;  3DWH A;  3WVH A;  3CAE A;  3HW4 A;  4PW6 A;  4E5J A;  4CGX A;  2XI7 A;  5DBS A;  2ZKG A;  2ZO2 B;  4F0P A;  3WVK A;  2ZKD A;  3A4K A;  4E5H A;  3V1Z A;  5JHT A;  3EBJ A;  1BAM A;  4AWH A;  2ZO1 B;  4CHC A;  3WVG A;  4AWG A;  3V21 A;  4ZHZ A;  5D8U A;  2ZKE A;  3ODH A;  3CLZ A;  3DVO A;  1BHM A;  4AVL A;  5DEB A;  5D4G A;  1FZR A;  4F0Q A;  4AVQ A;  1M0I A;  3HW3 A;  2P14 A;  4R28 A;  3F8J B;  2PB7 A;  4YYL A;  1DFM A;  4YGI A;  4NFZ A;  2ZKF A;  4AWF A;  1KNV A;  5DES A;  3F8I A;  2FOK A;  2BAM A;  3HW5 A;  4ZQQ A;  2ZO0 B;  5EGA A;  4CGS A;  3Q0D A;  4PW7 A;  4RZL A;  5D2O A;  4PW5 A;  5CL0 A;  1VRR A;  5FDD A;  4AWK A;  5CGV A; 
#chains in the Genus database with same CATH homology
 3HW6 A;  4E5E A;  5JHV A;  3MQY A;  4E5F A;  2P0J A;  4E5G A;  5FDG A;  2PFJ A;  5D42 A;  3V20 A;  3Q0F A;  3Q0C A;  2EWF A;  4AWM A;  1DC1 A;  3BM3 A;  4AVG A;  3N7B A;  1D2I A;  5I13 A;  4ZI0 A;  1ES8 A;  3WVI A;  3MQ6 A;  2FQZ A;  1CFR A;  1ESG A;  1M0D A;  3DW9 A;  5D9J A;  4E5L A;  2XI5 A;  4E5I A;  1FOK A;  3Q0B X;  3N78 A;  3WVP A;  5CZN A;  5CCY A;  2E52 A;  3DPG A;  3BAM A;  4OC8 A;  1SDO A;  2GB7 A;  3WVH A;  3CAE A;  3HW4 A;  4E5J A;  4CGX A;  2XI7 A;  5DBS A;  4F0P A;  3WVK A;  3A4K A;  4E5H A;  3V1Z A;  5JHT A;  3EBJ A;  1BAM A;  4AWH A;  4CHC A;  3WVG A;  4AWG A;  3V21 A;  4ZHZ A;  5D8U A;  3ODH A;  3DVO A;  1BHM A;  4AVL A;  5DEB A;  5D4G A;  1FZR A;  4F0Q A;  4AVQ A;  1M0I A;  3HW3 A;  2P14 A;  4R28 A;  4YYL A;  1DFM A;  4YGI A;  4NFZ A;  4AWF A;  1KNV A;  5DES A;  2FOK A;  2BAM A;  3HW5 A;  4ZQQ A;  5EGA A;  4CGS A;  3Q0D A;  4RZL A;  5D2O A;  5CL0 A;  1VRR A;  5FDD A;  4AWK A;  5CGV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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