4R5IA

Crystal structure of the dnak c-terminus with the substrate peptide nrllltg
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
222
structure length
222
Chain Sequence
HIEGRVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords Chaperone protein DnaK
publication title Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
pubmed doi rcsb
source organism Escherichia coli
total genus 70
structure length 222
sequence length 222
ec nomenclature
pdb deposition date 2014-08-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4r5iA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4r5iA01
4EZOA 3T48A 4F01A 3T47A 4B9QA 4EZNA 2V7YA 3DOBA 3T46A 4JN4A 1BPRA 3T49A 4PO2A 4E81A 4EZTA 4FL9A 4EZWA 4EZXA 4EZRA 2OP6A 1CKRA 3DPQA 4JNEA 4F00A 3C7NB 3C7NA 1YUWA 7HSCA 4R5KA 1Q5LA 3OHXM 4JWCA 1DKZA 3DPPA 3D2EA 4R5IA 2BPRA 1DKXA 3QNJA 4EZVA 4WV7A 3D2FA 4HY9A 3DQGA 2KHOA 4JWDA 1DKYA 4EZQA 4HYBA 2QXLA 4R5JA 4JNFA 3H0XA 4JWEA 4EZZA 1DG4A 2WINM 4H6HA 4H6IA 4JWIA 4EZPA 4WV5A 3N8EA 4EZYA 1U00A 4EZUA 2QFFA 3DPOA 5E84A 3L3OM 4EZSA 4R5GA 4R5LA 5TKYA 3T4AG
chains in the Genus database with same CATH superfamily
2D1LA 3I39X 2Q12A 1QX1A 2YL8A 3VEBA 4FZSA 2LM0A 3B53X 4H6IA 4AVMA 4EZUA 3LMFA 1MJGA 4E3CA 4M0MA 4I43A 3A98A 2EFKA 4JL9A 1I4TA 3DX1A 4IW0A 3C7NB 4R5KA 3BUDA 2F7OA 3QNJA 4HY9A 4IM0A 1SU7A 4NPHA 2ND0A 4EZZA 4JWIA 2YLLA 4EZYA 4KIKA 4AZGA 2V7YA 2OZNB 2Z8YA 3EJPA 1QWNA 2OW6A 2FYVA 1DKYA 3DX0A 3D51A 4WPEA 1U00A 3SOGA 2YIVX 4AZCB 3ERCC 2X3WA 2YI8A 1TQTA 3EJQA 4ATMA 2V0OA 1HWWA 3ZEFA 2F18A 3SBSA 1LQ7A 3LVTA 3F7WA 3EJSA 4HYBA 2EWFA 4H6HA 4AZ6A 3O3NB 3M3WA 4AZ5A 5KBPA 3QNIA 1I49A 2EFLA 3HAJA 1OAOA 3EJRA 4EZXA 4AKVA 4F00A 1ZYLA 3OHXM 1DKZA 3CZSA 2BPRA 2Q13A 4HR1B 2OBMA 1HTYA 1TQUA 1O7DC 2YLAA 1R5EA 3BUIA 3RPMA 4FZPA 4EZTA 1HXKA 4ILGA 3SYVA 2YIAA 3BUPA 3HAIA 7HSCA 1WDZA 3DPPA 3D4ZA 2OW7A 4D8JA 3H0XA 2MI7A 3I04A 1OA0A 4AZHA 2QFFA 4EZSA 2F7PA 3ER8C 2YL9A 4IWOA 2JNSA 3C7NA 1YUWA 1Q5LA 4G6QA 3D2EA 1DKXA 3ZEDA 2KHOA 2QKWA 2QXLA 3BVTA 3D4YA 1JQKA 2ZXQA 3ER9B 3DPOA 3BVXA 4FM3A 3DDGA 3QE6A 4EZOA 2N3KA 1SU6A 3DX3A 3O3OB 3LLLA 2F1BA 2RT6A 3G9GA 2GA9D 4WV5A 3Q84A 1TQSA 3BLBA 4AZ7A 2OBLA 4ILHB 5TKYA 3D50A 1YWMA 5FIGA 4NSWA 4AZCA 1PS3A 2OO2A 3I01A 4R5IA 1QWUA 4IM3A 4IM2A 4EZQA 3BVWA 2PY6A 4JNFA 4EZPA 3N8EA 3EJUA 2YL6A 2YKTA 4F01A 3OWGA 1SUFA 3DX2A 3T49A 3Q0KA 4EZWA 4IWQA 3UITA 2YI9A 2RAIA 3BVUA 1R33A 4JWCA 3EJTA 3CZNA 1W9MA 4I1QA 4JWEA 1DG4A 4HR1A 3ABHA 3RV0A 2FICA 5C5BB 3L3OM 1E9VA 4R5GA 4WPCA 3T47A 2RAKA 3BUQA 3OK8A 1GNTA 1E1DA 3PLTA 3SBTB 3QWEA 3CV5A 3QA8A 4AZIA 3KDRA 4MQDA 1X04A 1R34A 3RV1A 1UPXA 3DOBA 3B51X 2WYIA 3CAZA 4FL9A 1E2UA 1ZWWA 3DPQA 1X03A 4UDXX 1URUA 4EZVA 3DQGA 2NCZA 1OA1A 4R5LA 1TQWA 4E81A 4B9QA 3T46A 3CVRA 4PO2A 4JLCA 2OP6A 4NQIA 3O3MB 4IWPA 2F1AA 3DX4A 2GAFD 3BVVA 3FD9A 3ACOA 4JWDA 3KAWA 3VEAA 3D52A 2RAJA 4KIKB 3HAHA 3T4AG 3T48A 2D4CA 4JN4A 1BPRA 4EZRA 2GF4A 2Z0OA 2ND1A 4H8SA 2F7RA 4WV7A 2JNKA 3D2FA 1GNLA 2WYHA 1I4DA 4DYLA 3DYTA 2Z0NA 1GN9A 3B52X 4UDYX 4EZNA 1CKRA 4JNEA 2ALWA 2YL5A 2F7QA 2LXYA 3KAVA 2Z0VA 1O7DB 2ELBA 2X5CA 3I2WA 2YIBA 4AZBA 1SU8A 5E84A 5C5BA 4DCNC 2X3XA 5FLEX 3CKDA 2X3VA 3GI7A 1TQVA 3DDFA 1Y2OA 3VKHA 1I4LA 2PMRA 2O0I1 4R5JA 2C08A 2WINM 3L3PA 4FZOA 4ILIA 3BUBA 4BNEA 2EX3B
chains in the Genus database with same CATH topology
5FIGA 4B9QA 3T46A 1OAOA 4PO2A 4JLCA 4EZXA 3I39X 2OP6A 3O3MB 4IWPA 4F00A 2GAFD 1ZYLA 3OHXM 1DKZA 3VEBA 3FD9A 3I01A 4R5IA 2BPRA 4IM3A 4JWDA 4IM2A 4EZQA 2LM0A 3B53X 3KAWA 3VEAA 2PY6A 4JNFA 4HR1B 2OBMA 4H6IA 4EZPA 3N8EA 4EZUA 4KIKB 3LMFA 1MJGA 4E3CA 3T4AG 4M0MA 3T48A 4I43A 4F01A 3OWGA 1SUFA 4JN4A 1BPRA 3A98A 3T49A 4EZTA 4EZWA 4IWQA 4EZRA 4JL9A 2YI9A 3UITA 4ILGA 4IW0A 3C7NB 2YIAA 2ND1A 7HSCA 4R5KA 4JWCA 3DPPA 3QNJA 4WV7A 4D8JA 3D2FA 4HY9A 4IM0A 1SU7A 1GNLA 1W9MA 4NPHA 2ND0A 3H0XA 4JWEA 4EZZA 1DG4A 4HR1A 4JWIA 3I04A 1OA0A 3RV0A 4EZYA 2QFFA 4EZSA 4KIKA 3L3OM 1E9VA 4R5GA 1GN9A 3B52X 3ER8C 4IWOA 2V7YA 3T47A 4UDYX 4EZNA 2JNSA 2Z8YA 1CKRA 4JNEA 3C7NA 1YUWA 1GNTA 1Q5LA 1E1DA 4G6QA 3D2EA 3SBTB 1DKXA 3QA8A 3ZEDA 3KAVA 2KHOA 1DKYA 2QXLA 2X5CA 2YIBA 1SU8A 1JQKA 1U00A 3ER9B 3DPOA 3KDRA 5E84A 2YIVX 4FM3A 4MQDA 3RV1A 4EZOA 1UPXA 3DOBA 3B51X 5FLEX 3ERCC 2YI8A 4E81A 4FL9A 1E2UA 2N3KA 3DPQA 3GI7A 1SU6A 3ZEFA 3O3OB 2RT6A 3SBSA 4UDXX 4EZVA 3VKHA 3DQGA 3F7WA 4HYBA 2NCZA 4R5JA 2EWFA 2GA9D 2WINM 4H6HA 4WV5A 3O3NB 1OA1A 4ILIA 2OBLA 4R5LA 4ILHB 5TKYA 2EX3B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EZO A;  3T48 A;  4F01 A;  3T47 A;  4B9Q A;  4EZN A;  2V7Y A;  3DOB A;  3T46 A;  4JN4 A;  1BPR A;  3T49 A;  4PO2 A;  4E81 A;  4EZT A;  4FL9 A;  4EZW A;  4EZX A;  4EZR A;  2OP6 A;  1CKR A;  3DPQ A;  4JNE A;  4F00 A;  3C7N B;  3C7N A;  1YUW A;  7HSC A;  4R5K A;  1Q5L A;  3OHX M;  4JWC A;  1DKZ A;  3DPP A;  3D2E A;  4R5I A;  2BPR A;  1DKX A;  3QNJ A;  4EZV A;  4WV7 A;  3D2F A;  4HY9 A;  3DQG A;  2KHO A;  4JWD A;  1DKY A;  4EZQ A;  4HYB A;  2QXL A;  4R5J A;  4JNF A;  3H0X A;  4JWE A;  4EZZ A;  1DG4 A;  2WIN M;  4H6H A;  4H6I A;  4JWI A;  4EZP A;  4WV5 A;  3N8E A;  4EZY A;  1U00 A;  4EZU A;  2QFF A;  3DPO A;  5E84 A;  3L3O M;  4EZS A;  4R5G A;  4R5L A;  5TKY A;  3T4A G; 
#chains in the Genus database with same CATH topology
 2D1L A;  3I39 X;  2Q12 A;  1QX1 A;  2YL8 A;  3VEB A;  4FZS A;  2LM0 A;  3B53 X;  4H6I A;  4AVM A;  4EZU A;  3LMF A;  1MJG A;  4E3C A;  4M0M A;  4I43 A;  3A98 A;  2EFK A;  4JL9 A;  1I4T A;  3DX1 A;  4IW0 A;  3C7N B;  4R5K A;  3BUD A;  2F7O A;  3QNJ A;  4HY9 A;  4IM0 A;  1SU7 A;  4NPH A;  2ND0 A;  4EZZ A;  4JWI A;  2YLL A;  4EZY A;  4KIK A;  4AZG A;  2V7Y A;  2OZN B;  2Z8Y A;  3EJP A;  1QWN A;  2OW6 A;  2FYV A;  1DKY A;  3DX0 A;  3D51 A;  4WPE A;  1U00 A;  3SOG A;  2YIV X;  4AZC B;  3ERC C;  2X3W A;  2YI8 A;  1TQT A;  3EJQ A;  4ATM A;  2V0O A;  1HWW A;  3ZEF A;  2F18 A;  3SBS A;  1LQ7 A;  3LVT A;  3F7W A;  3EJS A;  4HYB A;  2EWF A;  4H6H A;  4AZ6 A;  3O3N B;  3M3W A;  4AZ5 A;  5KBP A;  3QNI A;  1I49 A;  2EFL A;  3HAJ A;  1OAO A;  3EJR A;  4EZX A;  4AKV A;  4F00 A;  1ZYL A;  3OHX M;  1DKZ A;  3CZS A;  2BPR A;  2Q13 A;  4HR1 B;  2OBM A;  1HTY A;  1TQU A;  1O7D C;  2YLA A;  1R5E A;  3BUI A;  3RPM A;  4FZP A;  4EZT A;  1HXK A;  4ILG A;  3SYV A;  2YIA A;  3BUP A;  3HAI A;  7HSC A;  1WDZ A;  3DPP A;  3D4Z A;  2OW7 A;  4D8J A;  3H0X A;  2MI7 A;  3I04 A;  1OA0 A;  4AZH A;  2QFF A;  4EZS A;  2F7P A;  3ER8 C;  2YL9 A;  4IWO A;  2JNS A;  3C7N A;  1YUW A;  1Q5L A;  4G6Q A;  3D2E A;  1DKX A;  3ZED A;  2KHO A;  2QKW A;  2QXL A;  3BVT A;  3D4Y A;  1JQK A;  2ZXQ A;  3ER9 B;  3DPO A;  3BVX A;  4FM3 A;  3DDG A;  3QE6 A;  4EZO A;  2N3K A;  1SU6 A;  3DX3 A;  3O3O B;  3LLL A;  2F1B A;  2RT6 A;  3G9G A;  2GA9 D;  4WV5 A;  3Q84 A;  1TQS A;  3BLB A;  4AZ7 A;  2OBL A;  4ILH B;  5TKY A;  3D50 A;  1YWM A;  5FIG A;  4NSW A;  4AZC A;  1PS3 A;  2OO2 A;  3I01 A;  4R5I A;  1QWU A;  4IM3 A;  4IM2 A;  4EZQ A;  3BVW A;  2PY6 A;  4JNF A;  4EZP A;  3N8E A;  3EJU A;  2YL6 A;  2YKT A;  4F01 A;  3OWG A;  1SUF A;  3DX2 A;  3T49 A;  3Q0K A;  4EZW A;  4IWQ A;  3UIT A;  2YI9 A;  2RAI A;  3BVU A;  1R33 A;  4JWC A;  3EJT A;  3CZN A;  1W9M A;  4I1Q A;  4JWE A;  1DG4 A;  4HR1 A;  3ABH A;  3RV0 A;  2FIC A;  5C5B B;  3L3O M;  1E9V A;  4R5G A;  4WPC A;  3T47 A;  2RAK A;  3BUQ A;  3OK8 A;  1GNT A;  1E1D A;  3PLT A;  3SBT B;  3QWE A;  3CV5 A;  3QA8 A;  4AZI A;  3KDR A;  4MQD A;  1X04 A;  1R34 A;  3RV1 A;  1UPX A;  3DOB A;  3B51 X;  2WYI A;  3CAZ A;  4FL9 A;  1E2U A;  1ZWW A;  3DPQ A;  1X03 A;  4UDX X;  1URU A;  4EZV A;  3DQG A;  2NCZ A;  1OA1 A;  4R5L A;  1TQW A;  4E81 A;  4B9Q A;  3T46 A;  3CVR A;  4PO2 A;  4JLC A;  2OP6 A;  4NQI A;  3O3M B;  4IWP A;  2F1A A;  3DX4 A;  2GAF D;  3BVV A;  3FD9 A;  3ACO A;  4JWD A;  3KAW A;  3VEA A;  3D52 A;  2RAJ A;  4KIK B;  3HAH A;  3T4A G;  3T48 A;  2D4C A;  4JN4 A;  1BPR A;  4EZR A;  2GF4 A;  2Z0O A;  2ND1 A;  4H8S A;  2F7R A;  4WV7 A;  2JNK A;  3D2F A;  1GNL A;  2WYH A;  1I4D A;  4DYL A;  3DYT A;  2Z0N A;  1GN9 A;  3B52 X;  4UDY X;  4EZN A;  1CKR A;  4JNE A;  2ALW A;  2YL5 A;  2F7Q A;  2LXY A;  3KAV A;  2Z0V A;  1O7D B;  2ELB A;  2X5C A;  3I2W A;  2YIB A;  4AZB A;  1SU8 A;  5E84 A;  5C5B A;  4DCN C;  2X3X A;  5FLE X;  3CKD A;  2X3V A;  3GI7 A;  1TQV A;  3DDF A;  1Y2O A;  3VKH A;  1I4L A;  2PMR A;  2O0I 1;  4R5J A;  2C08 A;  2WIN M;  3L3P A;  4FZO A;  4ILI A;  3BUB A;  4BNE A;  2EX3 B; 
#chains in the Genus database with same CATH homology
 5FIG A;  4B9Q A;  3T46 A;  1OAO A;  4PO2 A;  4JLC A;  4EZX A;  3I39 X;  2OP6 A;  3O3M B;  4IWP A;  4F00 A;  2GAF D;  1ZYL A;  3OHX M;  1DKZ A;  3VEB A;  3FD9 A;  3I01 A;  4R5I A;  2BPR A;  4IM3 A;  4JWD A;  4IM2 A;  4EZQ A;  2LM0 A;  3B53 X;  3KAW A;  3VEA A;  2PY6 A;  4JNF A;  4HR1 B;  2OBM A;  4H6I A;  4EZP A;  3N8E A;  4EZU A;  4KIK B;  3LMF A;  1MJG A;  4E3C A;  3T4A G;  4M0M A;  3T48 A;  4I43 A;  4F01 A;  3OWG A;  1SUF A;  4JN4 A;  1BPR A;  3A98 A;  3T49 A;  4EZT A;  4EZW A;  4IWQ A;  4EZR A;  4JL9 A;  2YI9 A;  3UIT A;  4ILG A;  4IW0 A;  3C7N B;  2YIA A;  2ND1 A;  7HSC A;  4R5K A;  4JWC A;  3DPP A;  3QNJ A;  4WV7 A;  4D8J A;  3D2F A;  4HY9 A;  4IM0 A;  1SU7 A;  1GNL A;  1W9M A;  4NPH A;  2ND0 A;  3H0X A;  4JWE A;  4EZZ A;  1DG4 A;  4HR1 A;  4JWI A;  3I04 A;  1OA0 A;  3RV0 A;  4EZY A;  2QFF A;  4EZS A;  4KIK A;  3L3O M;  1E9V A;  4R5G A;  1GN9 A;  3B52 X;  3ER8 C;  4IWO A;  2V7Y A;  3T47 A;  4UDY X;  4EZN A;  2JNS A;  2Z8Y A;  1CKR A;  4JNE A;  3C7N A;  1YUW A;  1GNT A;  1Q5L A;  1E1D A;  4G6Q A;  3D2E A;  3SBT B;  1DKX A;  3QA8 A;  3ZED A;  3KAV A;  2KHO A;  1DKY A;  2QXL A;  2X5C A;  2YIB A;  1SU8 A;  1JQK A;  1U00 A;  3ER9 B;  3DPO A;  3KDR A;  5E84 A;  2YIV X;  4FM3 A;  4MQD A;  3RV1 A;  4EZO A;  1UPX A;  3DOB A;  3B51 X;  5FLE X;  3ERC C;  2YI8 A;  4E81 A;  4FL9 A;  1E2U A;  2N3K A;  3DPQ A;  3GI7 A;  1SU6 A;  3ZEF A;  3O3O B;  2RT6 A;  3SBS A;  4UDX X;  4EZV A;  3VKH A;  3DQG A;  3F7W A;  4HYB A;  2NCZ A;  4R5J A;  2EWF A;  2GA9 D;  2WIN M;  4H6H A;  4WV5 A;  3O3N B;  1OA1 A;  4ILI A;  2OBL A;  4R5L A;  4ILH B;  5TKY A;  2EX3 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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