The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
215
|
structure length |
215
|
Chain Sequence |
FNGMELLSPKPLCSVVNCEDLEKLDHVSALNELRREQEIFKLLPGIYAHRYDFRRVSPSIINDFEYCPRLLWVQHKLGLKLLSEKSVVSIIRGRILHERYERLLSQYENVVAEYKVEIGDLVGVVDLVIKRGGEYIPVEIKTGFSKEAHKTQLQIYISMLKARFGYLVYRNHVEVVHRNDAALDVLKKIREILSAREAPPAKCNSCIFKPICKNL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure and nuclease activity of the CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis containing a [2Fe-2S] cluster
rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Pyrobaculum calidifontis jcm 11548
|
| molecule keywords |
CRISPR-associated exonuclease, Cas4 family
|
| total genus |
58
|
| structure length |
215
|
| sequence length |
215
|
| ec nomenclature |
ec
3.1.12.1: 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming). |
| pdb deposition date | 2014-08-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01930 | Cas_Cas4 | Domain of unknown function DUF83 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Lambda Exonuclease; Chain A | Lambda Exonuclease; Chain A |
#chains in the Genus database with same CATH superfamily 3H4R A; 4CEI A; 1W36 B; 3K70 B; 3U44 A; 4CEJ A; 4CEH A; 4IC1 A; 3K93 A; 4WUZ A; 3SZ5 A; 3SLP A; 3SYY A; 1AVQ A; 4R5Q A; 3L0A A; 5LD2 B; 3SM4 A; 3U4Q A; 3SZ4 A; #chains in the Genus database with same CATH topology 5A8R C; 3M2U C; 3POT C; 3H4R A; 1W36 B; 4CEI A; 5A8K C; 1E6V C; 3K70 B; 3U44 A; 3SZ4 A; 4CEJ A; 4CEH A; 3M30 C; 4IC1 A; 1MRO C; 1E6Y C; 3SQG C; 3M2R C; 1HBM C; 3K93 A; 4WUZ A; 3SZ5 A; 3SLP A; 1HBO C; 3SYY A; 3M1V C; 1AVQ A; 5A8W C; 4R5Q A; 3L0A A; 5A0Y C; 1HBU C; 5G0R C; 3M32 C; 5LD2 B; 1HBN C; 3SM4 A; 3U4Q A; 3M2V C; #chains in the Genus database with same CATH homology 3H4R A; 4CEI A; 1W36 B; 3K70 B; 3U44 A; 4CEJ A; 4CEH A; 4IC1 A; 3K93 A; 4WUZ A; 3SZ5 A; 3SLP A; 3SYY A; 1AVQ A; 4R5Q A; 3L0A A; 5LD2 B; 3SM4 A; 3U4Q A; 3SZ4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
