4R6PA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity.
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
total genus 30
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6pA00
3LLZA 5BN6E 2HYQA 2NU5A 3WOCA 2BMZA 1C3NA 4MQ0A 3VY7A 3VZGA 1C3MA 5JM1A 1TP8A 4PIKA 4R6NA 3WOBA 3LL2A 2BN0A 3MITA 1JOTA 2GUDA 1J4UA 1UGWA 2BMYA 2HYRA 5J4TA 1JACA 1UGWC 3LKYA 1UH0A 4DDNA 3LL1A 4AK4A 5AV7A 4PITA 1WS5A 2GTYA 3LL0A 3R50A 4R6RA 1WS5C 4AKBA 4WOGA 4PIUA 1XXQA 1ZGRA 2GUXA 3R52A 3O44A 1M26A 1X1VA 2GUEA 4GX7A 1XEZA 4R6QA 3LLYA 3AQGA 2NUOA 4R6PA 3R51A 1WS4A 1VBOA 3APAA 5J50A 1WS4C 3LM1A 1TOQA 4R6OA 3VZEA 1J4SA 5J51A 4PIFA 3VY6A 1OUWA 1ZGSA 2GUCA 1UH1A 1PXDA 4AKDA 3MIVA 1KU8A 1UGYA 2JZ4A 1C3KA 3MIUA 1UGYC 3VZFA 5EXGA 5J4XA 1XXRA 1KUJA 3P8SA 1VBPA 4AKCA 1UGXA 1J4TA
chains in the Genus database with same CATH superfamily
3LLZA 5BN6E 2HYQA 2NU5A 1JI6A 3WOCA 2BMZA 1C3NA 4MQ0A 3VY7A 3VZGA 1C3MA 1CIYA 2QP2A 5JM1A 1TP8A 4PIKA 4D8MA 4R6NA 1VMOA 3WOBA 1DLCA 4W8JA 3LL2A 2BN0A 3MITA 1JOTA 2GUDA 1J4UA 1UGWA 4QX3A 2BMYA 2HYRA 5J4TA 1JACA 1UGWC 3LKYA 1UH0A 4DDNA 3LL1A 4AK4A 5AV7A 4PITA 1WS5A 2C9KA 2GTYA 4ARYA 3LL0A 3R50A 4R6RA 1WS5C 4AKBA 4WOGA 4PIUA 1XXQA 1ZGRA 2GUXA 3R52A 3O44A 1I5PA 1M26A 1X1VA 2GUEA 4GX7A 1XEZA 4R6QA 3LLYA 3AQGA 4QX2A 2NUOA 4R6PA 3R51A 1WS4A 1VBOA 3APAA 5J50A 1WS4C 3LM1A 4QX0A 1TOQA 4R6OA 3VZEA 1J4SA 5J51A 4PIFA 3VY6A 1OUWA 1ZGSA 2GUCA 1UH1A 1PXDA 4AKDA 3MIVA 1KU8A 1UGYA 2JZ4A 1C3KA 3MIUA 4MOAA 3EB7A 1UGYC 3VZFA 1W99A 5EXGA 5J4XA 1XXRA 1KUJA 4ARXA 3TOWA 3P8SA 1VBPA 4QX1A 4AKCA 1UGXA 1J4TA
chains in the Genus database with same CATH topology
3LLZA 5BN6E 2HYQA 2NU5A 3WOCA 2BMZA 1C3NA 4MQ0A 3VY7A 3VZGA 1C3MA 5JM1A 1TP8A 4PIKA 4R6NA 3WOBA 3LL2A 2BN0A 3MITA 1JOTA 2GUDA 1J4UA 1UGWA 2BMYA 2HYRA 5J4TA 1JACA 1UGWC 3LKYA 1UH0A 4DDNA 3LL1A 4AK4A 5AV7A 4PITA 1WS5A 2GTYA 3LL0A 3R50A 4R6RA 1WS5C 4AKBA 4WOGA 4PIUA 1XXQA 1ZGRA 2GUXA 3R52A 3O44A 1M26A 1X1VA 2GUEA 4GX7A 1XEZA 4R6QA 3LLYA 3AQGA 2NUOA 4R6PA 3R51A 1WS4A 1VBOA 3APAA 5J50A 1WS4C 3LM1A 1TOQA 4R6OA 3VZEA 1J4SA 5J51A 4PIFA 3VY6A 1OUWA 1ZGSA 2GUCA 1UH1A 1PXDA 4AKDA 3MIVA 1KU8A 1UGYA 2JZ4A 1C3KA 3MIUA 1UGYC 3VZFA 5EXGA 5J4XA 1XXRA 1KUJA 3P8SA 1VBPA 4AKCA 1UGXA 1J4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLZ A;  5BN6 E;  2HYQ A;  2NU5 A;  3WOC A;  2BMZ A;  1C3N A;  4MQ0 A;  3VY7 A;  3VZG A;  1C3M A;  5JM1 A;  1TP8 A;  4PIK A;  4R6N A;  3WOB A;  3LL2 A;  2BN0 A;  3MIT A;  1JOT A;  2GUD A;  1J4U A;  1UGW A;  2BMY A;  2HYR A;  5J4T A;  1JAC A;  1UGW C;  3LKY A;  1UH0 A;  4DDN A;  3LL1 A;  4AK4 A;  5AV7 A;  4PIT A;  1WS5 A;  2GTY A;  3LL0 A;  3R50 A;  4R6R A;  1WS5 C;  4AKB A;  4WOG A;  4PIU A;  1XXQ A;  1ZGR A;  2GUX A;  3R52 A;  3O44 A;  1M26 A;  1X1V A;  2GUE A;  4GX7 A;  1XEZ A;  4R6Q A;  3LLY A;  3AQG A;  2NUO A;  4R6P A;  3R51 A;  1WS4 A;  1VBO A;  3APA A;  5J50 A;  1WS4 C;  3LM1 A;  1TOQ A;  4R6O A;  3VZE A;  1J4S A;  5J51 A;  4PIF A;  3VY6 A;  1OUW A;  1ZGS A;  2GUC A;  1UH1 A;  1PXD A;  4AKD A;  3MIV A;  1KU8 A;  1UGY A;  2JZ4 A;  1C3K A;  3MIU A;  1UGY C;  3VZF A;  5EXG A;  5J4X A;  1XXR A;  1KUJ A;  3P8S A;  1VBP A;  4AKC A;  1UGX A;  1J4T A; 
#chains in the Genus database with same CATH topology
 3LLZ A;  5BN6 E;  2HYQ A;  2NU5 A;  1JI6 A;  3WOC A;  2BMZ A;  1C3N A;  4MQ0 A;  3VY7 A;  3VZG A;  1C3M A;  1CIY A;  2QP2 A;  5JM1 A;  1TP8 A;  4PIK A;  4D8M A;  4R6N A;  1VMO A;  3WOB A;  1DLC A;  4W8J A;  3LL2 A;  2BN0 A;  3MIT A;  1JOT A;  2GUD A;  1J4U A;  1UGW A;  4QX3 A;  2BMY A;  2HYR A;  5J4T A;  1JAC A;  1UGW C;  3LKY A;  1UH0 A;  4DDN A;  3LL1 A;  4AK4 A;  5AV7 A;  4PIT A;  1WS5 A;  2C9K A;  2GTY A;  4ARY A;  3LL0 A;  3R50 A;  4R6R A;  1WS5 C;  4AKB A;  4WOG A;  4PIU A;  1XXQ A;  1ZGR A;  2GUX A;  3R52 A;  3O44 A;  1I5P A;  1M26 A;  1X1V A;  2GUE A;  4GX7 A;  1XEZ A;  4R6Q A;  3LLY A;  3AQG A;  4QX2 A;  2NUO A;  4R6P A;  3R51 A;  1WS4 A;  1VBO A;  3APA A;  5J50 A;  1WS4 C;  3LM1 A;  4QX0 A;  1TOQ A;  4R6O A;  3VZE A;  1J4S A;  5J51 A;  4PIF A;  3VY6 A;  1OUW A;  1ZGS A;  2GUC A;  1UH1 A;  1PXD A;  4AKD A;  3MIV A;  1KU8 A;  1UGY A;  2JZ4 A;  1C3K A;  3MIU A;  4MOA A;  3EB7 A;  1UGY C;  3VZF A;  1W99 A;  5EXG A;  5J4X A;  1XXR A;  1KUJ A;  4ARX A;  3TOW A;  3P8S A;  1VBP A;  4QX1 A;  4AKC A;  1UGX A;  1J4T A; 
#chains in the Genus database with same CATH homology
 3LLZ A;  5BN6 E;  2HYQ A;  2NU5 A;  3WOC A;  2BMZ A;  1C3N A;  4MQ0 A;  3VY7 A;  3VZG A;  1C3M A;  5JM1 A;  1TP8 A;  4PIK A;  4R6N A;  3WOB A;  3LL2 A;  2BN0 A;  3MIT A;  1JOT A;  2GUD A;  1J4U A;  1UGW A;  2BMY A;  2HYR A;  5J4T A;  1JAC A;  1UGW C;  3LKY A;  1UH0 A;  4DDN A;  3LL1 A;  4AK4 A;  5AV7 A;  4PIT A;  1WS5 A;  2GTY A;  3LL0 A;  3R50 A;  4R6R A;  1WS5 C;  4AKB A;  4WOG A;  4PIU A;  1XXQ A;  1ZGR A;  2GUX A;  3R52 A;  3O44 A;  1M26 A;  1X1V A;  2GUE A;  4GX7 A;  1XEZ A;  4R6Q A;  3LLY A;  3AQG A;  2NUO A;  4R6P A;  3R51 A;  1WS4 A;  1VBO A;  3APA A;  5J50 A;  1WS4 C;  3LM1 A;  1TOQ A;  4R6O A;  3VZE A;  1J4S A;  5J51 A;  4PIF A;  3VY6 A;  1OUW A;  1ZGS A;  2GUC A;  1UH1 A;  1PXD A;  4AKD A;  3MIV A;  1KU8 A;  1UGY A;  2JZ4 A;  1C3K A;  3MIU A;  1UGY C;  3VZF A;  5EXG A;  5J4X A;  1XXR A;  1KUJ A;  3P8S A;  1VBP A;  4AKC A;  1UGX A;  1J4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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