4RHWE

Crystal structure of apaf-1 card and caspase-9 card complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
95
structure length
95
Chain Sequence
MDEADRRLLRRCRLRLVEELQVDQLWDALLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRTNRQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Apoptotic protease-activating factor 1
publication title Molecular determinants of caspase-9 activation by the Apaf-1 apoptosome.
pubmed doi rcsb
source organism Homo sapiens
total genus 39
structure length 95
sequence length 95
chains with identical sequence F
ec nomenclature ec 3.4.22.62: Caspase-9.
pdb deposition date 2014-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 4rhwE00
3MOPK 4N1KA 2LS7A 2KN6A 2MS7A 2O71A 4UZ0A 4D8OA 4N1JA 4A2WA 3MOPA 1FADA 3LQRA 2M5VA 4IZ5E 4ZBWA 2A5YB 1A1WA 2L6AA 4A2QA 2LWDA 4IZAB 2N1FA 1E41A 4M9ZA 4E9MA 2N83A 3CRDA 4LWDA 4QOBA 1WMGA 1D2ZA 4N1LA 4I16A 2N7ZA 4RHWE 4RHWA 2MN4A 2YQFA 3YGSC 4O6XA 2A9IA 2N00A 4DWNA 1WXPA 3MOPG 2NSNA 4O9FA 2D96A 2DBHA 4M9SA 2L9MA 2VGQA 2MS8A 4M9XA 3YGSP 1C15A 2YVIA 4NQKA 3T6PA 2DBFA 4F44A 2B1WA 2F1SA 2P1HA 4O7QA 3EZQB 4F42A 2NZ7A 1UCPA 2N97A 2KM6A 2YGSA 4FH0A 3LQQA 2MPCA 1A1ZA 1YGOA 1CY5A 4JQWA 1CWWA 4P4HI 3KATA 2N80A 2MB9A 4P4HA 3QF2A 1Z6TA 2HM2Q 2IB1A 2YU0A 1E3YA 1N3KA 2G7RA 3J6JA 3CL3A 1NGRA 2NAQA 2OF5A 2GF5A 4O9LA 2BBZA 1D2ZB 4JUPA 3J63A 1PN5A 2BBRA 1ICHA 2LWEA 2DBDA 1WH4A 3EZQA 1DDFA 2DBGA 1DGNA 2OF5H 2DO9A 4EWIA 4IZ7B
chains in the Genus database with same CATH superfamily
3MOPK 4N1KA 2LS7A 2KN6A 2MS7A 2O71A 4UZ0A 4D8OA 4N1JA 4A2WA 3MOPA 1FADA 3LQRA 2M5VA 4IZ5E 4ZBWA 2A5YB 1A1WA 2L6AA 2MJMA 4A2QA 2LWDA 4IZAB 2N1FA 1E41A 4M9ZA 4E9MA 2N83A 3CRDA 4LWDA 4QOBA 1WMGA 1D2ZA 4N1LA 4I16A 2N7ZA 4RHWE 4RHWA 2MN4A 2YQFA 3YGSC 4O6XA 2A9IA 2XV9A 2N00A 4DWNA 1WXPA 3MOPG 2NSNA 4O9FA 2D96A 2DBHA 4M9SA 2L9MA 2VGQA 2MS8A 4M9XA 3YGSP 1C15A 2YVIA 4NQKA 3T6PA 2DBFA 4F44A 2B1WA 2F1SA 2P1HA 4O7QA 3EZQB 4F42A 2NZ7A 1UCPA 2N97A 2KM6A 2YGSA 4FH0A 3LQQA 2MPCA 1A1ZA 1YGOA 1CY5A 4JQWA 1CWWA 4P4HI 3KATA 2N80A 2MB9A 4P4HA 3QF2A 1Z6TA 2HM2Q 2IB1A 2YU0A 1E3YA 1N3KA 2G7RA 3J6JA 3CL3A 1NGRA 2NAQA 2OF5A 2GF5A 4O9LA 2BBZA 1D2ZB 4JUPA 3J63A 1PN5A 2BBRA 1ICHA 2LWEA 2DBDA 1WH4A 3EZQA 1DDFA 2DBGA 1DGNA 2OF5H 2DO9A 4EWIA 4IZ7B
chains in the Genus database with same CATH topology
3MOPK 4N1KA 2LS7A 2KN6A 2MS7A 2O71A 4UZ0A 4D8OA 4N1JA 4A2WA 3MOPA 1FADA 3LQRA 2M5VA 4IZ5E 4ZBWA 2A5YB 1A1WA 2L6AA 2MJMA 4A2QA 2LWDA 4IZAB 2N1FA 1E41A 4M9ZA 4E9MA 2N83A 3CRDA 4LWDA 4QOBA 1WMGA 1D2ZA 4N1LA 4I16A 2N7ZA 4RHWE 4RHWA 2MN4A 2YQFA 3YGSC 4O6XA 2A9IA 2XV9A 2N00A 4DWNA 1WXPA 3MOPG 2NSNA 4O9FA 2D96A 2DBHA 4M9SA 2L9MA 2VGQA 2MS8A 4M9XA 3YGSP 1C15A 2YVIA 4NQKA 3T6PA 2DBFA 4F44A 2B1WA 2F1SA 2P1HA 4O7QA 3EZQB 4F42A 2NZ7A 1UCPA 2N97A 2KM6A 2YGSA 4FH0A 3LQQA 2MPCA 1A1ZA 1YGOA 1CY5A 4JQWA 1CWWA 4P4HI 3KATA 2N80A 2MB9A 4P4HA 3QF2A 1Z6TA 2HM2Q 2IB1A 2YU0A 1E3YA 1N3KA 2G7RA 3J6JA 3CL3A 1NGRA 2NAQA 2OF5A 2GF5A 4O9LA 2BBZA 1D2ZB 4JUPA 3J63A 1PN5A 2BBRA 1ICHA 2LWEA 2DBDA 1WH4A 3EZQA 1DDFA 2DBGA 1DGNA 2OF5H 2DO9A 4EWIA 4IZ7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MOP K;  4N1K A;  2LS7 A;  2KN6 A;  2MS7 A;  2O71 A;  4UZ0 A;  4D8O A;  4N1J A;  4A2W A;  3MOP A;  1FAD A;  3LQR A;  2M5V A;  4IZ5 E;  4ZBW A;  2A5Y B;  1A1W A;  2L6A A;  4A2Q A;  2LWD A;  4IZA B;  2N1F A;  1E41 A;  4M9Z A;  4E9M A;  2N83 A;  3CRD A;  4LWD A;  4QOB A;  1WMG A;  1D2Z A;  4N1L A;  4I16 A;  2N7Z A;  4RHW E;  4RHW A;  2MN4 A;  2YQF A;  3YGS C;  4O6X A;  2A9I A;  2N00 A;  4DWN A;  1WXP A;  3MOP G;  2NSN A;  4O9F A;  2D96 A;  2DBH A;  4M9S A;  2L9M A;  2VGQ A;  2MS8 A;  4M9X A;  3YGS P;  1C15 A;  2YVI A;  4NQK A;  3T6P A;  2DBF A;  4F44 A;  2B1W A;  2F1S A;  2P1H A;  4O7Q A;  3EZQ B;  4F42 A;  2NZ7 A;  1UCP A;  2N97 A;  2KM6 A;  2YGS A;  4FH0 A;  3LQQ A;  2MPC A;  1A1Z A;  1YGO A;  1CY5 A;  4JQW A;  1CWW A;  4P4H I;  3KAT A;  2N80 A;  2MB9 A;  4P4H A;  3QF2 A;  1Z6T A;  2HM2 Q;  2IB1 A;  2YU0 A;  1E3Y A;  1N3K A;  2G7R A;  3J6J A;  3CL3 A;  1NGR A;  2NAQ A;  2OF5 A;  2GF5 A;  4O9L A;  2BBZ A;  1D2Z B;  4JUP A;  3J63 A;  1PN5 A;  2BBR A;  1ICH A;  2LWE A;  2DBD A;  1WH4 A;  3EZQ A;  1DDF A;  2DBG A;  1DGN A;  2OF5 H;  2DO9 A;  4EWI A;  4IZ7 B; 
#chains in the Genus database with same CATH topology
 3MOP K;  4N1K A;  2LS7 A;  2KN6 A;  2MS7 A;  2O71 A;  4UZ0 A;  4D8O A;  4N1J A;  4A2W A;  3MOP A;  1FAD A;  3LQR A;  2M5V A;  4IZ5 E;  4ZBW A;  2A5Y B;  1A1W A;  2L6A A;  2MJM A;  4A2Q A;  2LWD A;  4IZA B;  2N1F A;  1E41 A;  4M9Z A;  4E9M A;  2N83 A;  3CRD A;  4LWD A;  4QOB A;  1WMG A;  1D2Z A;  4N1L A;  4I16 A;  2N7Z A;  4RHW E;  4RHW A;  2MN4 A;  2YQF A;  3YGS C;  4O6X A;  2A9I A;  2XV9 A;  2N00 A;  4DWN A;  1WXP A;  3MOP G;  2NSN A;  4O9F A;  2D96 A;  2DBH A;  4M9S A;  2L9M A;  2VGQ A;  2MS8 A;  4M9X A;  3YGS P;  1C15 A;  2YVI A;  4NQK A;  3T6P A;  2DBF A;  4F44 A;  2B1W A;  2F1S A;  2P1H A;  4O7Q A;  3EZQ B;  4F42 A;  2NZ7 A;  1UCP A;  2N97 A;  2KM6 A;  2YGS A;  4FH0 A;  3LQQ A;  2MPC A;  1A1Z A;  1YGO A;  1CY5 A;  4JQW A;  1CWW A;  4P4H I;  3KAT A;  2N80 A;  2MB9 A;  4P4H A;  3QF2 A;  1Z6T A;  2HM2 Q;  2IB1 A;  2YU0 A;  1E3Y A;  1N3K A;  2G7R A;  3J6J A;  3CL3 A;  1NGR A;  2NAQ A;  2OF5 A;  2GF5 A;  4O9L A;  2BBZ A;  1D2Z B;  4JUP A;  3J63 A;  1PN5 A;  2BBR A;  1ICH A;  2LWE A;  2DBD A;  1WH4 A;  3EZQ A;  1DDF A;  2DBG A;  1DGN A;  2OF5 H;  2DO9 A;  4EWI A;  4IZ7 B; 
#chains in the Genus database with same CATH homology
 3MOP K;  4N1K A;  2LS7 A;  2KN6 A;  2MS7 A;  2O71 A;  4UZ0 A;  4D8O A;  4N1J A;  4A2W A;  3MOP A;  1FAD A;  3LQR A;  2M5V A;  4IZ5 E;  4ZBW A;  2A5Y B;  1A1W A;  2L6A A;  2MJM A;  4A2Q A;  2LWD A;  4IZA B;  2N1F A;  1E41 A;  4M9Z A;  4E9M A;  2N83 A;  3CRD A;  4LWD A;  4QOB A;  1WMG A;  1D2Z A;  4N1L A;  4I16 A;  2N7Z A;  4RHW E;  4RHW A;  2MN4 A;  2YQF A;  3YGS C;  4O6X A;  2A9I A;  2XV9 A;  2N00 A;  4DWN A;  1WXP A;  3MOP G;  2NSN A;  4O9F A;  2D96 A;  2DBH A;  4M9S A;  2L9M A;  2VGQ A;  2MS8 A;  4M9X A;  3YGS P;  1C15 A;  2YVI A;  4NQK A;  3T6P A;  2DBF A;  4F44 A;  2B1W A;  2F1S A;  2P1H A;  4O7Q A;  3EZQ B;  4F42 A;  2NZ7 A;  1UCP A;  2N97 A;  2KM6 A;  2YGS A;  4FH0 A;  3LQQ A;  2MPC A;  1A1Z A;  1YGO A;  1CY5 A;  4JQW A;  1CWW A;  4P4H I;  3KAT A;  2N80 A;  2MB9 A;  4P4H A;  3QF2 A;  1Z6T A;  2HM2 Q;  2IB1 A;  2YU0 A;  1E3Y A;  1N3K A;  2G7R A;  3J6J A;  3CL3 A;  1NGR A;  2NAQ A;  2OF5 A;  2GF5 A;  4O9L A;  2BBZ A;  1D2Z B;  4JUP A;  3J63 A;  1PN5 A;  2BBR A;  1ICH A;  2LWE A;  2DBD A;  1WH4 A;  3EZQ A;  1DDF A;  2DBG A;  1DGN A;  2OF5 H;  2DO9 A;  4EWI A;  4IZ7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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