4RJXA

Crystal structure of the opro mutant protein f62y/d114y
Total Genus 130
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
425
structure length
425
Chain Sequence
LQHHHHHHHLEGTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYSRFDGFYTKNGNTADAAYFRRAYIELGGTAYKDWKYQINFDLSHNTGSSDNGYFDEASVTYTGFNPVNLKFGRFYPDFGLEKATSSKWVTAPERNAAYELADWINTHQDGMGAQVNSTLADMAYLSAGVSAKDADDSDGDSVKQFNFRGVFAPMHEAGNVLHVGVNYAYRDLDDTAFDSRIRPRLGMRGIATSGGNDAGDNGNRATFGGVSNSPAGSYKDDSVWGLEGAWAMGPFSAQAEYLARKLKADDNAYKDIKAKGYYAQLAYTLTGESRQYKLEGAKFDSVKPENKEIGAWEVFYRYDNIKVEDDNVVADTATREVGDTKAKAHNLGVNWYVNDAVKISAAYVKAKTDKITNNNGDDDGDGFVTRLQYVF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Porin O
publication title Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 130
structure length 425
sequence length 425
ec nomenclature
pdb deposition date 2014-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07396 Porin_O_P Phosphate-selective porin O and P
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4rjxA00
4FOZA 2ODJA 2Y0HA 4FT6A 4BUMX 3HW9A 3UU2A 3VZTX 4LSEA 3UPGA 3VY8X 3WI4A 1GFMA 2XE3A 1MPFA 4C69X 3WI5A 1GFQA 3FYXA 4JFBA 1HXUA 2QTKA 3HWBA 2FGRA 2XG6A 3VZUX 3T0SA 4LSFA 3SY9A 4GCQA 1BT9A 1OPFA 1PHOA 1GFOA 5DL6A 5DL5A 4FRTA 1OSMA 1GFPA 3NSGA 2PRNA 2Y0KA 4LSHA 1HXXA 3POUA 7PRNA 3T20A 3VY9X 5FVNA 5DL8A 2PORA 2XE1A 4FSPA 3SZDA 4KR8A 5PRNA 1HXTA 3T24A 4FSOA 4D65A 4RJXA 2XE2A 3SYBA 3K19A 2Y0LA 2ZFGA 5DL7A 4FRXA 2K4TA 2O4VA 4KRAA 3SY7A 4D64A 2FGQX 8PRNA 3O0EA 1E54A 6PRNA 3SYSA 4GCSA 2XE5A 5JDPA 4AUIA 1BH3A 3JTYA 2J4UP 2J1NA 3SZVA 1PRNA 2OMFA 2ZLDA 3POXA 4GCPA 3PORA 4RJWA 4D5UA 3VZWX 3PRNA 3EMNX 4KR4A 2Y2XA 4LSIA 1GFNA 4FMSA 3POQA 3A2SX 1H6S1
chains in the Genus database with same CATH superfamily
4GF4A 3A2SX 3BRZA 3PGRA 4FOZA 3LK41 3DZMA 3V8UA 2F1VA 2ODJA 2Y0HA 4FT6A 4BUMX 3A0BO 3HW9A 3TZGA 4C00A 3UU2A 3VZTX 4LSEA 3UPGA 3VY8X 3WI4A 3GP6A 1G90A 3G7GA 3PGSA 4GHBA 2LFUA 4RLCA 2AXTO 4O3WA 1T16A 4IL6O 4O3ZA 4AYMC 3WU2O 5B5EO 1GFMA 2XE3A 4RL9A 3KVDD 2F1CX 3HOLA 1MM5A 1MPFA 4C69X 3AAEA 2KXPA 2M06A 3QRAA 2KC0A 4AYEC 5ADXK 3WI5A 1GFQA 2R4PA 3FYXA 4N75A 5H2FO 4JFBA 4O4XA 3AA0A 1HXUA 2M07A 3KZIO 5GTIO 2JMMA 5D5DA 2QTKA 5G39A 3BS0A 2R4OA 1QJPA 3HWBA 4PJ0O 2FGRA 2KXPB 4AFKA 2Y7SA 2XG6A 3VZUX 3T0SA 4Z3TA 4LSFA 3SY9A 5IYUA 4O3YA 4GCQA 1MM4A 4E1TA 3NJTA 1BT9A 1OPFA 1PHOA 1GFOA 3PGUA 3LK2A 4QQ1A 5DL6A 2ERVA 3AA6A 5G26A 5DL5A 4FRTA 4AYID 1QJ8A 2W81C 1GFPA 1OSMA 2X9KA 3HOEA 3NSGA 2PRNA 4C4VB 4G76A 2Y0KA 1Q9FA 4LSHA 3C5OA 2N2MA 1HXXA 4AZLA 3POUA 4JCHA 2XMXA 4AYNA 7PRNA 1ZHWA 3PQSA 4B61A 3LK2B 5B66O 5EE2A 3AA6B 5AFUK 3VE1A 4N59A 3VY9X 3T20A 4XNKA 3AA1A 2K0LA 3A0HO 4RLBA 5DL8A 2KZ7A 5FVNA 2PORA 2XE1A 2R88A 4FSPA 4FESA 4FZMA 3AA7A 4UB8O 3DWOX 3SZDA 4KR8A 1BXWA 5PRNA 4CTDA 1HXTA 2WVPA 3AAEB 3LK3A 3T24A 4AKRA 5TISO 4FSOA 2LHFA 4K3BA 1YS5A 4D65A 5GTHO 5G3AA 4N58A 2XE2A 2R8AA 3AA0B 3AA1B 4RJXA 3SYBA 3K19A 2Y0LA 2KZ7B 3JCUO 2ZFGA 3RBHA 3VE2A 4AYDC 3AA7B 2WJQA 1IZNA 5DL7A 3LK3B 1THQA 4FRXA 2K4TA 2N2LA 2O4VA 4G75A 3AAAA 4KRAA 2R4NA 4N74A 3DA3A 3SY7A 4FZLA 5E79O 4D64A 4K3CA 2FGQX 4U9CA 8PRNA 3BRYA 1QJ9A 1E54A 3O0EA 4FUVA 6PRNA 5ADXL 1IZNB 2XTQA 3SYSA 4O3XB 2YNKA 4GCSA 2GE4A 2XTRA 5KAFO 2XE5A 1ZHZA 2X27X 3AAAB 2WJRA 2KDYA 5KAIO 2YPVA 5AFUL 4UB6O 2JQYA 3QRCA 5JDPA 3UAQA 4AUIA 2MNHA 2MHLA 1BH3A 3JTYA 2J4UP 2J1NA 4O4UA 1P4TA 3SZVA 2W80C 3DWNA 2OMFA 3PF1A 3PQUA 2R4LA 4O49A 4PUXA 1S5LO 4FQEA 4XNLA 2ZLDA 3POXA 4AKMA 4GCPA 1Q9GA 1ORMA 3PORA 4PR7A 4RJWA 4AKRB 4D5UA 1ZHXA 5T5FA 1T1LA 4E1SA 4F4BA 1ZHTA 3VZWX 2F1TA 3PRNA 3EMNX 3DA4A 2IWVA 4KR4A 2IWWA 2R89A 5G38A 2Y2XA 4LSIA 1GFNA 4FMSA 1ZHYA 3POQA 4FZNA 5GV0A 3LK42 1PRNA 1H6S1 4C4VA
chains in the Genus database with same CATH topology
4GF4A 3A2SX 4FOZA 3LK41 3V8UA 2F1VA 2ODJA 2Y0HA 4FT6A 4BUMX 3HW9A 3TZGA 3UU2A 3VZTX 4LSEA 3UPGA 3VY8X 3WI4A 3GP6A 1G90A 3G7GA 4GHBA 2LFUA 4RLCA 4O3WA 4O3ZA 4AYMC 1GFMA 2XE3A 4RL9A 3KVDD 3HOLA 1MM5A 1MPFA 4C69X 3AAEA 2KXPA 2M06A 3QRAA 2KC0A 4AYEC 5ADXK 3WI5A 1GFQA 3FYXA 4JFBA 4O4XA 3AA0A 1HXUA 2M07A 2JMMA 5D5DA 2QTKA 1QJPA 3HWBA 2FGRA 2KXPB 4AFKA 2Y7SA 2XG6A 3VZUX 3T0SA 4Z3TA 4LSFA 3SY9A 5IYUA 4O3YA 4GCQA 1MM4A 4E1TA 1BT9A 1OPFA 1PHOA 1GFOA 4QQ1A 3LK2A 5DL6A 5G26A 2ERVA 3AA6A 5AFUK 5DL5A 4FRTA 4AYID 1QJ8A 2W81C 1GFPA 1OSMA 3HOEA 3NSGA 2PRNA 4G76A 2Y0KA 1Q9FA 4LSHA 3C5OA 2N2MA 1HXXA 4AZLA 3POUA 4JCHA 2XMXA 4AYNA 7PRNA 1ZHWA 3PQSA 4B61A 3LK2B 5EE2A 3AA6B 3VE1A 4N59A 3VY9X 3T20A 4XNKA 3AA1A 2K0LA 5FVNA 4RLBA 5DL8A 2KZ7A 2PORA 2XE1A 4FSPA 4FESA 4FZMA 3AA7A 3SZDA 4KR8A 1BXWA 5PRNA 1HXTA 3AAEB 3LK3A 3T24A 4AKRA 4FSOA 2LHFA 1YS5A 4D65A 4N58A 2XE2A 3AA0B 4RJXA 3AA1B 3SYBA 3K19A 2Y0LA 2KZ7B 2ZFGA 3RBHA 3VE2A 4AYDC 3AA7B 1IZNA 5DL7A 3LK3B 1THQA 4FRXA 2K4TA 2N2LA 2O4VA 4G75A 3AAAA 4KRAA 3SY7A 3DA3A 4FZLA 4D64A 2FGQX 4U9CA 8PRNA 1QJ9A 1E54A 3O0EA 4FUVA 6PRNA 5ADXL 1IZNB 2XTQA 3SYSA 4O3XB 2YNKA 4GCSA 2GE4A 2XTRA 2XE5A 1ZHZA 2X27X 3AAAB 2KDYA 2YPVA 3QRCA 5JDPA 3UAQA 4AUIA 2MNHA 2MHLA 1BH3A 3JTYA 2J4UP 2J1NA 4O4UA 1P4TA 3SZVA 2W80C 2OMFA 3PQUA 4O49A 4PUXA 4XNLA 5AFUL 4AKMA 2ZLDA 3POXA 4GCPA 1Q9GA 1ORMA 3PORA 4RJWA 4AKRB 4D5UA 1ZHXA 5T5FA 4E1SA 4F4BA 1ZHTA 3VZWX 2F1TA 3PRNA 3EMNX 3DA4A 4KR4A 2Y2XA 4LSIA 1GFNA 4FMSA 1ZHYA 3POQA 4FZNA 5GV0A 3LK42 1PRNA 1H6S1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FOZ A;  2ODJ A;  2Y0H A;  4FT6 A;  4BUM X;  3HW9 A;  3UU2 A;  3VZT X;  4LSE A;  3UPG A;  3VY8 X;  3WI4 A;  1GFM A;  2XE3 A;  1MPF A;  4C69 X;  3WI5 A;  1GFQ A;  3FYX A;  4JFB A;  1HXU A;  2QTK A;  3HWB A;  2FGR A;  2XG6 A;  3VZU X;  3T0S A;  4LSF A;  3SY9 A;  4GCQ A;  1BT9 A;  1OPF A;  1PHO A;  1GFO A;  5DL6 A;  5DL5 A;  4FRT A;  1OSM A;  1GFP A;  3NSG A;  2PRN A;  2Y0K A;  4LSH A;  1HXX A;  3POU A;  7PRN A;  3T20 A;  3VY9 X;  5FVN A;  5DL8 A;  2POR A;  2XE1 A;  4FSP A;  3SZD A;  4KR8 A;  5PRN A;  1HXT A;  3T24 A;  4FSO A;  4D65 A;  4RJX A;  2XE2 A;  3SYB A;  3K19 A;  2Y0L A;  2ZFG A;  5DL7 A;  4FRX A;  2K4T A;  2O4V A;  4KRA A;  3SY7 A;  4D64 A;  2FGQ X;  8PRN A;  3O0E A;  1E54 A;  6PRN A;  3SYS A;  4GCS A;  2XE5 A;  5JDP A;  4AUI A;  1BH3 A;  3JTY A;  2J4U P;  2J1N A;  3SZV A;  1PRN A;  2OMF A;  2ZLD A;  3POX A;  4GCP A;  3POR A;  4RJW A;  4D5U A;  3VZW X;  3PRN A;  3EMN X;  4KR4 A;  2Y2X A;  4LSI A;  1GFN A;  4FMS A;  3POQ A;  3A2S X;  1H6S 1; 
#chains in the Genus database with same CATH topology
 4GF4 A;  3A2S X;  3BRZ A;  3PGR A;  4FOZ A;  3LK4 1;  3DZM A;  3V8U A;  2F1V A;  2ODJ A;  2Y0H A;  4FT6 A;  4BUM X;  3A0B O;  3HW9 A;  3TZG A;  4C00 A;  3UU2 A;  3VZT X;  4LSE A;  3UPG A;  3VY8 X;  3WI4 A;  3GP6 A;  1G90 A;  3G7G A;  3PGS A;  4GHB A;  2LFU A;  4RLC A;  2AXT O;  4O3W A;  1T16 A;  4IL6 O;  4O3Z A;  4AYM C;  3WU2 O;  5B5E O;  1GFM A;  2XE3 A;  4RL9 A;  3KVD D;  2F1C X;  3HOL A;  1MM5 A;  1MPF A;  4C69 X;  3AAE A;  2KXP A;  2M06 A;  3QRA A;  2KC0 A;  4AYE C;  5ADX K;  3WI5 A;  1GFQ A;  2R4P A;  3FYX A;  4N75 A;  5H2F O;  4JFB A;  4O4X A;  3AA0 A;  1HXU A;  2M07 A;  3KZI O;  5GTI O;  2JMM A;  5D5D A;  2QTK A;  5G39 A;  3BS0 A;  2R4O A;  1QJP A;  3HWB A;  4PJ0 O;  2FGR A;  2KXP B;  4AFK A;  2Y7S A;  2XG6 A;  3VZU X;  3T0S A;  4Z3T A;  4LSF A;  3SY9 A;  5IYU A;  4O3Y A;  4GCQ A;  1MM4 A;  4E1T A;  3NJT A;  1BT9 A;  1OPF A;  1PHO A;  1GFO A;  3PGU A;  3LK2 A;  4QQ1 A;  5DL6 A;  2ERV A;  3AA6 A;  5G26 A;  5DL5 A;  4FRT A;  4AYI D;  1QJ8 A;  2W81 C;  1GFP A;  1OSM A;  2X9K A;  3HOE A;  3NSG A;  2PRN A;  4C4V B;  4G76 A;  2Y0K A;  1Q9F A;  4LSH A;  3C5O A;  2N2M A;  1HXX A;  4AZL A;  3POU A;  4JCH A;  2XMX A;  4AYN A;  7PRN A;  1ZHW A;  3PQS A;  4B61 A;  3LK2 B;  5B66 O;  5EE2 A;  3AA6 B;  5AFU K;  3VE1 A;  4N59 A;  3VY9 X;  3T20 A;  4XNK A;  3AA1 A;  2K0L A;  3A0H O;  4RLB A;  5DL8 A;  2KZ7 A;  5FVN A;  2POR A;  2XE1 A;  2R88 A;  4FSP A;  4FES A;  4FZM A;  3AA7 A;  4UB8 O;  3DWO X;  3SZD A;  4KR8 A;  1BXW A;  5PRN A;  4CTD A;  1HXT A;  2WVP A;  3AAE B;  3LK3 A;  3T24 A;  4AKR A;  5TIS O;  4FSO A;  2LHF A;  4K3B A;  1YS5 A;  4D65 A;  5GTH O;  5G3A A;  4N58 A;  2XE2 A;  2R8A A;  3AA0 B;  3AA1 B;  4RJX A;  3SYB A;  3K19 A;  2Y0L A;  2KZ7 B;  3JCU O;  2ZFG A;  3RBH A;  3VE2 A;  4AYD C;  3AA7 B;  2WJQ A;  1IZN A;  5DL7 A;  3LK3 B;  1THQ A;  4FRX A;  2K4T A;  2N2L A;  2O4V A;  4G75 A;  3AAA A;  4KRA A;  2R4N A;  4N74 A;  3DA3 A;  3SY7 A;  4FZL A;  5E79 O;  4D64 A;  4K3C A;  2FGQ X;  4U9C A;  8PRN A;  3BRY A;  1QJ9 A;  1E54 A;  3O0E A;  4FUV A;  6PRN A;  5ADX L;  1IZN B;  2XTQ A;  3SYS A;  4O3X B;  2YNK A;  4GCS A;  2GE4 A;  2XTR A;  5KAF O;  2XE5 A;  1ZHZ A;  2X27 X;  3AAA B;  2WJR A;  2KDY A;  5KAI O;  2YPV A;  5AFU L;  4UB6 O;  2JQY A;  3QRC A;  5JDP A;  3UAQ A;  4AUI A;  2MNH A;  2MHL A;  1BH3 A;  3JTY A;  2J4U P;  2J1N A;  4O4U A;  1P4T A;  3SZV A;  2W80 C;  3DWN A;  2OMF A;  3PF1 A;  3PQU A;  2R4L A;  4O49 A;  4PUX A;  1S5L O;  4FQE A;  4XNL A;  2ZLD A;  3POX A;  4AKM A;  4GCP A;  1Q9G A;  1ORM A;  3POR A;  4PR7 A;  4RJW A;  4AKR B;  4D5U A;  1ZHX A;  5T5F A;  1T1L A;  4E1S A;  4F4B A;  1ZHT A;  3VZW X;  2F1T A;  3PRN A;  3EMN X;  3DA4 A;  2IWV A;  4KR4 A;  2IWW A;  2R89 A;  5G38 A;  2Y2X A;  4LSI A;  1GFN A;  4FMS A;  1ZHY A;  3POQ A;  4FZN A;  5GV0 A;  3LK4 2;  1PRN A;  1H6S 1;  4C4V A; 
#chains in the Genus database with same CATH homology
 4GF4 A;  3A2S X;  4FOZ A;  3LK4 1;  3V8U A;  2F1V A;  2ODJ A;  2Y0H A;  4FT6 A;  4BUM X;  3HW9 A;  3TZG A;  3UU2 A;  3VZT X;  4LSE A;  3UPG A;  3VY8 X;  3WI4 A;  3GP6 A;  1G90 A;  3G7G A;  4GHB A;  2LFU A;  4RLC A;  4O3W A;  4O3Z A;  4AYM C;  1GFM A;  2XE3 A;  4RL9 A;  3KVD D;  3HOL A;  1MM5 A;  1MPF A;  4C69 X;  3AAE A;  2KXP A;  2M06 A;  3QRA A;  2KC0 A;  4AYE C;  5ADX K;  3WI5 A;  1GFQ A;  3FYX A;  4JFB A;  4O4X A;  3AA0 A;  1HXU A;  2M07 A;  2JMM A;  5D5D A;  2QTK A;  1QJP A;  3HWB A;  2FGR A;  2KXP B;  4AFK A;  2Y7S A;  2XG6 A;  3VZU X;  3T0S A;  4Z3T A;  4LSF A;  3SY9 A;  5IYU A;  4O3Y A;  4GCQ A;  1MM4 A;  4E1T A;  1BT9 A;  1OPF A;  1PHO A;  1GFO A;  4QQ1 A;  3LK2 A;  5DL6 A;  5G26 A;  2ERV A;  3AA6 A;  5AFU K;  5DL5 A;  4FRT A;  4AYI D;  1QJ8 A;  2W81 C;  1GFP A;  1OSM A;  3HOE A;  3NSG A;  2PRN A;  4G76 A;  2Y0K A;  1Q9F A;  4LSH A;  3C5O A;  2N2M A;  1HXX A;  4AZL A;  3POU A;  4JCH A;  2XMX A;  4AYN A;  7PRN A;  1ZHW A;  3PQS A;  4B61 A;  3LK2 B;  5EE2 A;  3AA6 B;  3VE1 A;  4N59 A;  3VY9 X;  3T20 A;  4XNK A;  3AA1 A;  2K0L A;  5FVN A;  4RLB A;  5DL8 A;  2KZ7 A;  2POR A;  2XE1 A;  4FSP A;  4FES A;  4FZM A;  3AA7 A;  3SZD A;  4KR8 A;  1BXW A;  5PRN A;  1HXT A;  3AAE B;  3LK3 A;  3T24 A;  4AKR A;  4FSO A;  2LHF A;  1YS5 A;  4D65 A;  4N58 A;  2XE2 A;  3AA0 B;  4RJX A;  3AA1 B;  3SYB A;  3K19 A;  2Y0L A;  2KZ7 B;  2ZFG A;  3RBH A;  3VE2 A;  4AYD C;  3AA7 B;  1IZN A;  5DL7 A;  3LK3 B;  1THQ A;  4FRX A;  2K4T A;  2N2L A;  2O4V A;  4G75 A;  3AAA A;  4KRA A;  3SY7 A;  3DA3 A;  4FZL A;  4D64 A;  2FGQ X;  4U9C A;  8PRN A;  1QJ9 A;  1E54 A;  3O0E A;  4FUV A;  6PRN A;  5ADX L;  1IZN B;  2XTQ A;  3SYS A;  4O3X B;  2YNK A;  4GCS A;  2GE4 A;  2XTR A;  2XE5 A;  1ZHZ A;  2X27 X;  3AAA B;  2KDY A;  2YPV A;  3QRC A;  5JDP A;  3UAQ A;  4AUI A;  2MNH A;  2MHL A;  1BH3 A;  3JTY A;  2J4U P;  2J1N A;  4O4U A;  1P4T A;  3SZV A;  2W80 C;  2OMF A;  3PQU A;  4O49 A;  4PUX A;  4XNL A;  5AFU L;  4AKM A;  2ZLD A;  3POX A;  4GCP A;  1Q9G A;  1ORM A;  3POR A;  4RJW A;  4AKR B;  4D5U A;  1ZHX A;  5T5F A;  4E1S A;  4F4B A;  1ZHT A;  3VZW X;  2F1T A;  3PRN A;  3EMN X;  3DA4 A;  4KR4 A;  2Y2X A;  4LSI A;  1GFN A;  4FMS A;  1ZHY A;  3POQ A;  4FZN A;  5GV0 A;  3LK4 2;  1PRN A;  1H6S 1; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...