4RR6A

N-terminal editing domain of threonyl-trna synthetase from aeropyrum pernix with l-ser3aa (snapshot 1)
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
136
structure length
136
Chain Sequence
MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSSRLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAELSRSFTE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
molecule keywords Probable threonine--tRNA ligase 2
publication title Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
pubmed doi rcsb
source organism Aeropyrum pernix k1
total genus 40
structure length 136
sequence length 136
ec nomenclature ec 6.1.1.3: Threonine--tRNA ligase.
pdb deposition date 2014-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08915 tRNA-Thr_ED Archaea-specific editing domain of threonyl-tRNA synthetase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 4rr6A01
4RR9A 3KO7A 2DBOA 4S0LA 2HL1A 3KOBA 2HL2A 3KOCA 4RRHA 4RR8A 4RRGA 3PD4A 1J7GA 4RRLA 3LMVA 4RRKA 4NBIA 3LMTA 4RRJA 4RR6A 4RRCA 3PD5A 5J61A 4RR7A 3KO9A 4NBJA 4S03A 4S0IA 2HL0A 2OKVA 3KO4A 4S0JA 4RRQA 1Y2QA 4RRBA 3KO3A 4RRDA 3LMUA 3KODA 3KNFA 4RRRA 4RRFA 4RRMA 1JKEA 3PD2A 2HKZA 4RRAA 3KO5A 4RRIA 1TC5A 4S02A 4S0KA 3PD3A 3KNPA
chains in the Genus database with same CATH superfamily
3V39A 3ZVTA 4RRLA 3LMVA 3LMTA 2EXBA 2XLNA 4B4XA 2EX2A 5J61A 3KO9A 2WKEA 2OKVA 4BENA 4RRDA 2VGJA 5CEBA 4RRAA 4RR9A 2DBOA 3A3IA 3A3DA 5CEDA 2HL2A 3KOCA 3PD4A 4NBIA 4RRJA 2XK1A 1W8YA 4S0JA 1Y2QA 4RRBA 3KO3A 4RRRA 3KNFA 2XDMA 1JKEA 4S0LA 3ZVWA 2EX6A 4RRGA 1J7GA 2Y55A 4RR6A 4RRCA 2Y4AA 4RR7A 2VGKA 4S0IA 4NBJA 2EX9A 2HL0A 3KO4A 4RRQA 1W79A 4RRFA 2HKZA 3A3FA 1W8QA 3A3EA 3KO5A 4RRIA 1TC5A 4S0KA 3PD3A 3KO7A 2HL1A 3KOBA 5CECA 4RRHA 4RR8A 5CERA 4RRKA 4B4ZA 3PD5A 2J9PA 4S03A 2Y59A 3LMUA 3KODA 2EXAA 4RRMA 3PD2A 1W5DA 3ZCZA 4S02A 2EX8A 3KNPA
chains in the Genus database with same CATH topology
3V39A 3ZVTA 4RRLA 3LMVA 3LMTA 2EXBA 2XLNA 4B4XA 2EX2A 5J61A 3KO9A 2WKEA 2OKVA 4BENA 4RRDA 2VGJA 5CEBA 4RRAA 4RR9A 2DBOA 3A3IA 3A3DA 5CEDA 2HL2A 3KOCA 3PD4A 4NBIA 4RRJA 2XK1A 1W8YA 4S0JA 1Y2QA 4RRBA 3KO3A 4RRRA 3KNFA 2XDMA 1JKEA 4S0LA 3ZVWA 2EX6A 4RRGA 1J7GA 2Y55A 4RR6A 4RRCA 2Y4AA 4RR7A 2VGKA 4S0IA 4NBJA 2EX9A 2HL0A 3KO4A 4RRQA 1W79A 4RRFA 2HKZA 3A3FA 1W8QA 3A3EA 3KO5A 4RRIA 1TC5A 4S0KA 3PD3A 3KO7A 2HL1A 3KOBA 5CECA 4RRHA 4RR8A 5CERA 4RRKA 4B4ZA 3PD5A 2J9PA 4S03A 2Y59A 3LMUA 3KODA 2EXAA 4RRMA 3PD2A 1W5DA 3ZCZA 4S02A 2EX8A 3KNPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RR9 A;  3KO7 A;  2DBO A;  4S0L A;  2HL1 A;  3KOB A;  2HL2 A;  3KOC A;  4RRH A;  4RR8 A;  4RRG A;  3PD4 A;  1J7G A;  4RRL A;  3LMV A;  4RRK A;  4NBI A;  3LMT A;  4RRJ A;  4RR6 A;  4RRC A;  3PD5 A;  5J61 A;  4RR7 A;  3KO9 A;  4NBJ A;  4S03 A;  4S0I A;  2HL0 A;  2OKV A;  3KO4 A;  4S0J A;  4RRQ A;  1Y2Q A;  4RRB A;  3KO3 A;  4RRD A;  3LMU A;  3KOD A;  3KNF A;  4RRR A;  4RRF A;  4RRM A;  1JKE A;  3PD2 A;  2HKZ A;  4RRA A;  3KO5 A;  4RRI A;  1TC5 A;  4S02 A;  4S0K A;  3PD3 A;  3KNP A; 
#chains in the Genus database with same CATH topology
 3V39 A;  3ZVT A;  4RRL A;  3LMV A;  3LMT A;  2EXB A;  2XLN A;  4B4X A;  2EX2 A;  5J61 A;  3KO9 A;  2WKE A;  2OKV A;  4BEN A;  4RRD A;  2VGJ A;  5CEB A;  4RRA A;  4RR9 A;  2DBO A;  3A3I A;  3A3D A;  5CED A;  2HL2 A;  3KOC A;  3PD4 A;  4NBI A;  4RRJ A;  2XK1 A;  1W8Y A;  4S0J A;  1Y2Q A;  4RRB A;  3KO3 A;  4RRR A;  3KNF A;  2XDM A;  1JKE A;  4S0L A;  3ZVW A;  2EX6 A;  4RRG A;  1J7G A;  2Y55 A;  4RR6 A;  4RRC A;  2Y4A A;  4RR7 A;  2VGK A;  4S0I A;  4NBJ A;  2EX9 A;  2HL0 A;  3KO4 A;  4RRQ A;  1W79 A;  4RRF A;  2HKZ A;  3A3F A;  1W8Q A;  3A3E A;  3KO5 A;  4RRI A;  1TC5 A;  4S0K A;  3PD3 A;  3KO7 A;  2HL1 A;  3KOB A;  5CEC A;  4RRH A;  4RR8 A;  5CER A;  4RRK A;  4B4Z A;  3PD5 A;  2J9P A;  4S03 A;  2Y59 A;  3LMU A;  3KOD A;  2EXA A;  4RRM A;  3PD2 A;  1W5D A;  3ZCZ A;  4S02 A;  2EX8 A;  3KNP A; 
#chains in the Genus database with same CATH homology
 3V39 A;  3ZVT A;  4RRL A;  3LMV A;  3LMT A;  2EXB A;  2XLN A;  4B4X A;  2EX2 A;  5J61 A;  3KO9 A;  2WKE A;  2OKV A;  4BEN A;  4RRD A;  2VGJ A;  5CEB A;  4RRA A;  4RR9 A;  2DBO A;  3A3I A;  3A3D A;  5CED A;  2HL2 A;  3KOC A;  3PD4 A;  4NBI A;  4RRJ A;  2XK1 A;  1W8Y A;  4S0J A;  1Y2Q A;  4RRB A;  3KO3 A;  4RRR A;  3KNF A;  2XDM A;  1JKE A;  4S0L A;  3ZVW A;  2EX6 A;  4RRG A;  1J7G A;  2Y55 A;  4RR6 A;  4RRC A;  2Y4A A;  4RR7 A;  2VGK A;  4S0I A;  4NBJ A;  2EX9 A;  2HL0 A;  3KO4 A;  4RRQ A;  1W79 A;  4RRF A;  2HKZ A;  3A3F A;  1W8Q A;  3A3E A;  3KO5 A;  4RRI A;  1TC5 A;  4S0K A;  3PD3 A;  3KO7 A;  2HL1 A;  3KOB A;  5CEC A;  4RRH A;  4RR8 A;  5CER A;  4RRK A;  4B4Z A;  3PD5 A;  2J9P A;  4S03 A;  2Y59 A;  3LMU A;  3KOD A;  2EXA A;  4RRM A;  3PD2 A;  1W5D A;  3ZCZ A;  4S02 A;  2EX8 A;  3KNP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...