4RRLA

E129a mutant of n-terminal editing domain of threonyl-trna synthetase from aeropyrum pernix with l-ser3aa
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
136
structure length
136
Chain Sequence
MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSSRLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAALSRSFTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords Probable threonine--tRNA ligase 2
publication title Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
pubmed doi rcsb
source organism Aeropyrum pernix k1
total genus 40
structure length 136
sequence length 136
ec nomenclature ec 6.1.1.3: Threonine--tRNA ligase.
pdb deposition date 2014-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08915 tRNA-Thr_ED Archaea-specific editing domain of threonyl-tRNA synthetase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 4rrlA01
1J7GA 3PD4A 4S0KA 3KODA 3KO4A 4RRQA 1TC5A 3KO9A 4RRGA 4RRIA 4RR6A 4RRAA 3KO3A 2HL0A 3LMTA 4RRBA 4RRLA 4NBIA 4S0JA 4RRHA 4RRCA 2HL1A 3PD5A 4S03A 4S02A 4RRJA 3KO5A 4NBJA 4RR9A 3KNFA 3LMUA 4RRKA 2HKZA 4S0IA 4RRFA 2OKVA 4RRMA 3KNPA 3PD2A 4RR7A 4S0LA 4RRDA 2DBOA 3LMVA 3KOCA 3KO7A 2HL2A 1Y2QA 3KOBA 1JKEA 3PD3A 4RRRA 5J61A 4RR8A
chains in the Genus database with same CATH superfamily
3KODA 3KO4A 4RRQA 2WKEA 2XDMA 4RRLA 3ZVWA 2J9PA 3A3EA 5CECA 4RRCA 2HL1A 4B4ZA 3PD5A 2Y55A 4RR9A 2EX6A 4RRKA 2EXBA 2EX2A 3ZVTA 4RRDA 1W8QA 5CEDA 5CEBA 4BENA 2XLNA 4RRIA 2HL0A 3LMTA 4RRBA 4S0JA 2XK1A 2EX9A 2Y59A 3A3DA 3KNFA 3LMUA 2HKZA 2OKVA 4RRMA 3PD2A 2VGKA 3LMVA 2EXAA 3A3IA 2HL2A 1JKEA 3PD3A 1J7GA 4S0KA 3KO9A 4RR6A 4RRAA 2VGJA 3V39A 2Y4AA 2EX8A 4S02A 1W79A 4NBJA 4RRFA 4B4XA 3KNPA 4RR7A 4S0LA 2DBOA 1Y2QA 4RRRA 5J61A 4RR8A 1W8YA 3PD4A 1TC5A 3A3FA 4RRGA 3KO3A 4NBIA 5CERA 4RRHA 4S03A 4RRJA 3KO5A 3ZCZA 4S0IA 1W5DA 3KOCA 3KO7A 3KOBA
chains in the Genus database with same CATH topology
3KODA 3KO4A 4RRQA 2WKEA 2XDMA 4RRLA 3ZVWA 2J9PA 3A3EA 5CECA 4RRCA 2HL1A 4B4ZA 3PD5A 2Y55A 4RR9A 2EX6A 4RRKA 2EXBA 2EX2A 3ZVTA 4RRDA 1W8QA 5CEDA 5CEBA 4BENA 2XLNA 4RRIA 2HL0A 3LMTA 4RRBA 4S0JA 2XK1A 2EX9A 2Y59A 3A3DA 3KNFA 3LMUA 2HKZA 2OKVA 4RRMA 3PD2A 2VGKA 3LMVA 2EXAA 3A3IA 2HL2A 1JKEA 3PD3A 1J7GA 4S0KA 3KO9A 4RR6A 4RRAA 2VGJA 3V39A 2Y4AA 2EX8A 4S02A 1W79A 4NBJA 4RRFA 4B4XA 3KNPA 4RR7A 4S0LA 2DBOA 1Y2QA 4RRRA 5J61A 4RR8A 1W8YA 3PD4A 1TC5A 3A3FA 4RRGA 3KO3A 4NBIA 5CERA 4RRHA 4S03A 4RRJA 3KO5A 3ZCZA 4S0IA 1W5DA 3KOCA 3KO7A 3KOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J7G A;  3PD4 A;  4S0K A;  3KOD A;  3KO4 A;  4RRQ A;  1TC5 A;  3KO9 A;  4RRG A;  4RRI A;  4RR6 A;  4RRA A;  3KO3 A;  2HL0 A;  3LMT A;  4RRB A;  4RRL A;  4NBI A;  4S0J A;  4RRH A;  4RRC A;  2HL1 A;  3PD5 A;  4S03 A;  4S02 A;  4RRJ A;  3KO5 A;  4NBJ A;  4RR9 A;  3KNF A;  3LMU A;  4RRK A;  2HKZ A;  4S0I A;  4RRF A;  2OKV A;  4RRM A;  3KNP A;  3PD2 A;  4RR7 A;  4S0L A;  4RRD A;  2DBO A;  3LMV A;  3KOC A;  3KO7 A;  2HL2 A;  1Y2Q A;  3KOB A;  1JKE A;  3PD3 A;  4RRR A;  5J61 A;  4RR8 A; 
#chains in the Genus database with same CATH topology
 3KOD A;  3KO4 A;  4RRQ A;  2WKE A;  2XDM A;  4RRL A;  3ZVW A;  2J9P A;  3A3E A;  5CEC A;  4RRC A;  2HL1 A;  4B4Z A;  3PD5 A;  2Y55 A;  4RR9 A;  2EX6 A;  4RRK A;  2EXB A;  2EX2 A;  3ZVT A;  4RRD A;  1W8Q A;  5CED A;  5CEB A;  4BEN A;  2XLN A;  4RRI A;  2HL0 A;  3LMT A;  4RRB A;  4S0J A;  2XK1 A;  2EX9 A;  2Y59 A;  3A3D A;  3KNF A;  3LMU A;  2HKZ A;  2OKV A;  4RRM A;  3PD2 A;  2VGK A;  3LMV A;  2EXA A;  3A3I A;  2HL2 A;  1JKE A;  3PD3 A;  1J7G A;  4S0K A;  3KO9 A;  4RR6 A;  4RRA A;  2VGJ A;  3V39 A;  2Y4A A;  2EX8 A;  4S02 A;  1W79 A;  4NBJ A;  4RRF A;  4B4X A;  3KNP A;  4RR7 A;  4S0L A;  2DBO A;  1Y2Q A;  4RRR A;  5J61 A;  4RR8 A;  1W8Y A;  3PD4 A;  1TC5 A;  3A3F A;  4RRG A;  3KO3 A;  4NBI A;  5CER A;  4RRH A;  4S03 A;  4RRJ A;  3KO5 A;  3ZCZ A;  4S0I A;  1W5D A;  3KOC A;  3KO7 A;  3KOB A; 
#chains in the Genus database with same CATH homology
 3KOD A;  3KO4 A;  4RRQ A;  2WKE A;  2XDM A;  4RRL A;  3ZVW A;  2J9P A;  3A3E A;  5CEC A;  4RRC A;  2HL1 A;  4B4Z A;  3PD5 A;  2Y55 A;  4RR9 A;  2EX6 A;  4RRK A;  2EXB A;  2EX2 A;  3ZVT A;  4RRD A;  1W8Q A;  5CED A;  5CEB A;  4BEN A;  2XLN A;  4RRI A;  2HL0 A;  3LMT A;  4RRB A;  4S0J A;  2XK1 A;  2EX9 A;  2Y59 A;  3A3D A;  3KNF A;  3LMU A;  2HKZ A;  2OKV A;  4RRM A;  3PD2 A;  2VGK A;  3LMV A;  2EXA A;  3A3I A;  2HL2 A;  1JKE A;  3PD3 A;  1J7G A;  4S0K A;  3KO9 A;  4RR6 A;  4RRA A;  2VGJ A;  3V39 A;  2Y4A A;  2EX8 A;  4S02 A;  1W79 A;  4NBJ A;  4RRF A;  4B4X A;  3KNP A;  4RR7 A;  4S0L A;  2DBO A;  1Y2Q A;  4RRR A;  5J61 A;  4RR8 A;  1W8Y A;  3PD4 A;  1TC5 A;  3A3F A;  4RRG A;  3KO3 A;  4NBI A;  5CER A;  4RRH A;  4S03 A;  4RRJ A;  3KO5 A;  3ZCZ A;  4S0I A;  1W5D A;  3KOC A;  3KO7 A;  3KOB A; 
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similar chains in the pdb database (?% sequence similarity)

 
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