4RTHA

The crystal structure of psbp from zea mays
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
172
structure length
167
Chain Sequence
NTDFISYVGDGFKLLIPSKWNPSKEREFPGQVLRYEDNFDANSNVSVIIQPTSKKAITEYGSPEEFLSQVDYLLGKQAYGGKTDETDAVATANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKGVEKAAASFSVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Membrane-extrinsic protein of photosystem II PsbP
publication title Crystal Structure Analysis of Extrinsic PsbP Protein of Photosystem II Reveals a Manganese-Induced Conformational Change
pubmed doi rcsb
total genus 43
structure length 167
sequence length 172
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 4rthA00
2LNJA 1V2BA 2VU4A 1EQ6A 3HLZA 3JCUP 2XB3A 4BQ8C 4BQ6D 4RTIA 3LYDA 4UI2D 1JHSA 3V7BA 1TU1A 4RTHA
chains in the Genus database with same CATH superfamily
4OUHA 2VU4A 1VR8A 2VT8A 3WA5B 3V7BA 4L9HA 1TU1A 4M5FB 1EQ6A 3BCYA 2XB3A 4N88B 4LUQC 4L9CA 4RTHA 2LNJA 1V2BA 4ESQA 3NR5A 4N7SB 4RTIA 3LYDA 4UI2D 1JHSA 3HLZA 4N80B 3JCUP 4BQ8C 4BQ6D
chains in the Genus database with same CATH topology
2LNJA 1V2BA 2VU4A 1EQ6A 3HLZA 3JCUP 2XB3A 4BQ8C 4BQ6D 4RTIA 3LYDA 4UI2D 1JHSA 3V7BA 1TU1A 4RTHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LNJ A;  1V2B A;  2VU4 A;  1EQ6 A;  3HLZ A;  3JCU P;  2XB3 A;  4BQ8 C;  4BQ6 D;  4RTI A;  3LYD A;  4UI2 D;  1JHS A;  3V7B A;  1TU1 A;  4RTH A; 
#chains in the Genus database with same CATH topology
 4OUH A;  2VU4 A;  1VR8 A;  2VT8 A;  3WA5 B;  3V7B A;  4L9H A;  1TU1 A;  4M5F B;  1EQ6 A;  3BCY A;  2XB3 A;  4N88 B;  4LUQ C;  4L9C A;  4RTH A;  2LNJ A;  1V2B A;  4ESQ A;  3NR5 A;  4N7S B;  4RTI A;  3LYD A;  4UI2 D;  1JHS A;  3HLZ A;  4N80 B;  3JCU P;  4BQ8 C;  4BQ6 D; 
#chains in the Genus database with same CATH homology
 2LNJ A;  1V2B A;  2VU4 A;  1EQ6 A;  3HLZ A;  3JCU P;  2XB3 A;  4BQ8 C;  4BQ6 D;  4RTI A;  3LYD A;  4UI2 D;  1JHS A;  3V7B A;  1TU1 A;  4RTH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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