4RV0A

Crystal structure of tn complex
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
167
structure length
159
Chain Sequence
b'GAMEPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of TN complex
rcsb
molecule keywords Transitional endoplasmic reticulum ATPase TER94
source organism Drosophila melanogaster
molecule tags Protein binding, transport protein
total genus 44
structure length 159
sequence length 167
chains with identical sequence C, E, G
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2014-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4rv0A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4rv0A02
1R7RA 2E7ZA 1S3SA 3ML1A 1TWFA 1WCMA 1ZC1A 2JIPA 1Y1VA 4KO8A 2JIRA 4KDLA 2JIQA 5FTJA 1Y1WA 2EEOB 1R9TA 3GTJA 1YLEA 4AOKB 1G8KA 2WAQA 2V3VA 3O5AA 3TM7B 1PPYA 3GTOA 1IW7D 3HKZA 5FTKA 3CF2A 3IR6A 3CQZA 4RV0A 3GTMA 5T5ID 1TMOA 2JA6A 3GTQA 2PJHB 5C1BA 1Q16A 1TWCA 1PQHA 1UHEA 1WLFA 1E60A 4C2MA 4D7ZB 2WB1A 1PQFA 1QCSA 1TWHA 2JIOA 5C18A 1CZ5A 1I3QA 2JV2A 3FKIA 2YUJA 3HU1A 5FTLA 1Y5IA 2JA7A 2DMRA 4KLNA 3IR7A 1VC3B 4CRYG 1PQEA 1PT0A 5FTNA 2NAPA 1KQFA 1TWAA 4QIWA 1E32A 2VPYA 2VPZA 5EPPA 1H0HA 2JA5A 4GA5A 4KDIA 1EU1A 1PT1A 1E61A 3PLXB 3GTGA 2VPXA 4GA6A 4KODA 3IR5A 1AA6A 1E18A 1UHDA 4AYBA 5DYIA 3HU3A 1Y4ZA 1QDNA 1PYUB 2E2IA 3QQ8A 3GTLA 3OUGA 2Y0SA 2VPWA 2IV2X 1DMRA 2NYAA 2R7ZA 1TWGA 4CS0A 1G8JA 2VUMA 3HU2A 1SIWA 1KQGA 2E2HA 3QWZA 1R27A 4DMRA 1DMSA 2R92A 5B6CA 2JIMA 2YU9A 1H5NA 1CZ4A 1PYQA 4CRZA 1OGYA 3GTKA 1SFOA 4AZDA 1FDOA 1E5VA 2NVYA 1I50A 3QQ7A 2KI8A 3QC8A 5T5MD 4AONB 1FDIA 2R93A 1AW8B 5GLFA 5DYGA 2PMZA 3H0GA 4AAYA 2B63A 5FTMA 3TIWA 3GTPA 3DMRA 1K83A 2NVXA 2C45A 2V45A 1CR5A
chains in the Genus database with same CATH superfamily
1R7RA 2E7ZA 1S3SA 3ML1A 1TWFA 3X2GA 1WCMA 2Q19X 1ZC1A 3M3GA 2PWYA 2JIPA 3CZBA 1Y1VA 4KO8A 4AQ7A 2JIRA 2KY9A 4KDLA 2A69D 2JIQA 2PJJA 2Q1CX 2O5JD 5FTJA 1Y1WA 2EEOB 2Q1AX 3LHDA 4AS1A 1R9TA 2PNWA 3GTJA 1YLEA 4AOKB 2AE0X 1G8KA 2WAQA 2V3VA 3O5AA 4JS7A 3TM7B 1BW4A 1PPYA 5H4UA 1O54A 2GF7A 3GTOA 2MM2A 3BQBA 1IW7D 2B25A 3HKZA 5FTKA 3FPTA 3CF2A 3ZJTA 3IR6A 3CQZA 4RV0A 3GTMA 5T5ID 3SUJA 2A6HD 3X2LA 1HD5A 1TMOA 2JA6A 3GTQA 5GLXA 2PJHB 5C1BA 1Q16A 1TWCA 4ZM7A 1PQHA 4CQNA 4ENGA 1UHEA 1WLFA 1E60A 3ZGZA 4C2MA 4D7ZB 5GM9A 1YNJD 2WB1A 3SULA 3D30A 1PQFA 3X2HA 1QCSA 1TWHA 4JJOA 2JIOA 3ENGA 5C18A 1CZ5A 1I3QA 2JV2A 3FKIA 2YUJA 3HU1A 5FTLA 2MM0A 1Y5IA 2JA7A 2DMRA 4KLNA 3IR7A 1VC3B 3SUMA 3SUKA 3X2MA 4CRYG 1PQEA 1PT0A 5FTNA 2NAPA 1KQFA 1YNND 1TWAA 4FG2A 2YVLA 4QIWA 1E32A 4ARCA 2VPYA 2VPZA 5EPPA 1H0HA 2KQAA 2JA5A 4GA5A 4KDIA 1EU1A 1PT1A 1E61A 3PLXB 4JCWA 3GTGA 2GFAA 1OA7A 2VPXA 4GA6A 4KODA 3IR5A 1AA6A 1BW3A 1E18A 1UHDA 4AYBA 2LW6A 1L8FA 5DYIA 3HU3A 5D6YA 1Y4ZA 1QDNA 2A6ED 2BH0A 2GAEA 1PYUB 2E2IA 3QQ8A 3GTLA 3OUGA 2ENGA 4UC4A 2QQRA 2Y0SA 2VPWA 1WC2A 4JP7A 4L48A 2IV2X 2G5DA 1DMRA 2NYAA 3ZJUA 2CW0D 3X2KA 2R7ZA 5D6WA 1TWGA 4CS0A 1G8JA 2VUMA 3HU2A 1SIWA 4FERA 1KQGA 2E2HA 3QWZA 1R27A 4JP6A 2Q1DX 4DMRA 1SMYD 1DMSA 2R92A 3X2OA 3X2JA 5B6CA 3FPRA 2JIMA 5EQJB 3LGAA 1OA9A 2YU9A 3X2IA 1H5NA 2PI8A 4AVRA 1CZ4A 1PYQA 5GLYA 3MB5A 4CRZA 3X2NA 1OGYA 3GTKA 4ARIA 2PICA 1SFOA 4AZDA 1FDOA 3X2PA 2BE5D 1E5VA 2NVYA 2HCZX 1I50A 2Q18X 3FPUA 2G6GA 3QQ7A 3ZJVA 5ERGB 4FFTA 2KI8A 1ZYRD 3QC8A 5T5MD 2A68D 4AONB 1FDIA 4FG4A 2R93A 5D6XA 1AW8B 5GLFA 1N10A 1I9GA 5CD1A 5DYGA 2PMZA 2XDPA 3H0GA 4AAYA 5CCXA 2B63A 5FTMA 3TIWA 2QQSA 3GTPA 3DMRA 1K83A 4FIBA 2NVXA 4NOHA 2C45A 2V45A 1CR5A 5CCBA
chains in the Genus database with same CATH topology
1R7RA 2E7ZA 1S3SA 3ML1A 1TWFA 1WCMA 2Q19X 1ZC1A 2PWYA 2JIPA 3CZBA 1Y1VA 4KO8A 4AQ7A 2JIRA 2KY9A 4KDLA 2A69D 2JIQA 2PJJA 2Q1CX 2O5JD 5FTJA 1Y1WA 2EEOB 2Q1AX 3LHDA 4AS1A 1R9TA 2PNWA 3GTJA 1YLEA 4AOKB 2AE0X 1G8KA 2WAQA 2V3VA 3O5AA 1O54A 3TM7B 1PPYA 2GF7A 3GTOA 2MM2A 3BQBA 1IW7D 2B25A 3HKZA 5FTKA 3FPTA 3CF2A 3ZJTA 3IR6A 3CQZA 4RV0A 3GTMA 5T5ID 2A6HD 1TMOA 2JA6A 3GTQA 2PJHB 5C1BA 1Q16A 1TWCA 1PQHA 4CQNA 1UHEA 1WLFA 1E60A 3ZGZA 4C2MA 4D7ZB 1YNJD 2WB1A 1PQFA 1QCSA 1TWHA 2JIOA 5C18A 1CZ5A 1I3QA 2JV2A 3FKIA 2YUJA 3HU1A 5FTLA 2MM0A 1Y5IA 2JA7A 2DMRA 4KLNA 3IR7A 1VC3B 4CRYG 1PQEA 1PT0A 5FTNA 2NAPA 1KQFA 1YNND 1TWAA 2YVLA 4QIWA 1E32A 4ARCA 2VPYA 2VPZA 5EPPA 1H0HA 2JA5A 4GA5A 4KDIA 1EU1A 1PT1A 1E61A 3PLXB 3GTGA 2GFAA 2VPXA 4GA6A 4KODA 3IR5A 1AA6A 1E18A 1UHDA 4AYBA 2LW6A 5D6YA 5DYIA 3HU3A 1Y4ZA 1QDNA 2A6ED 2GAEA 1PYUB 2E2IA 3QQ8A 3GTLA 3OUGA 4UC4A 2QQRA 2Y0SA 2VPWA 2IV2X 2G5DA 1DMRA 2NYAA 3ZJUA 2CW0D 2R7ZA 5D6WA 1TWGA 4CS0A 1G8JA 2VUMA 3HU2A 1SIWA 1KQGA 2E2HA 3QWZA 1R27A 2Q1DX 4DMRA 1SMYD 1DMSA 2R92A 5B6CA 3FPRA 2JIMA 5EQJB 3LGAA 2YU9A 1H5NA 2PI8A 1CZ4A 1PYQA 3MB5A 4CRZA 1OGYA 3GTKA 4ARIA 2PICA 1SFOA 4AZDA 1FDOA 2BE5D 1E5VA 2NVYA 1I50A 2Q18X 3FPUA 2G6GA 3QQ7A 3ZJVA 5ERGB 2KI8A 1ZYRD 3QC8A 5T5MD 2A68D 4AONB 1FDIA 2R93A 5D6XA 1AW8B 5GLFA 1I9GA 5CD1A 5DYGA 2PMZA 2XDPA 3H0GA 4AAYA 5CCXA 2B63A 5FTMA 3TIWA 2QQSA 3GTPA 3DMRA 1K83A 4FIBA 2NVXA 4NOHA 2C45A 2V45A 1CR5A 5CCBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R7R A;  2E7Z A;  1S3S A;  3ML1 A;  1TWF A;  1WCM A;  1ZC1 A;  2JIP A;  1Y1V A;  4KO8 A;  2JIR A;  4KDL A;  2JIQ A;  5FTJ A;  1Y1W A;  2EEO B;  1R9T A;  3GTJ A;  1YLE A;  4AOK B;  1G8K A;  2WAQ A;  2V3V A;  3O5A A;  3TM7 B;  1PPY A;  3GTO A;  1IW7 D;  3HKZ A;  5FTK A;  3CF2 A;  3IR6 A;  3CQZ A;  4RV0 A;  3GTM A;  5T5I D;  1TMO A;  2JA6 A;  3GTQ A;  2PJH B;  5C1B A;  1Q16 A;  1TWC A;  1PQH A;  1UHE A;  1WLF A;  1E60 A;  4C2M A;  4D7Z B;  2WB1 A;  1PQF A;  1QCS A;  1TWH A;  2JIO A;  5C18 A;  1CZ5 A;  1I3Q A;  2JV2 A;  3FKI A;  2YUJ A;  3HU1 A;  5FTL A;  1Y5I A;  2JA7 A;  2DMR A;  4KLN A;  3IR7 A;  1VC3 B;  4CRY G;  1PQE A;  1PT0 A;  5FTN A;  2NAP A;  1KQF A;  1TWA A;  4QIW A;  1E32 A;  2VPY A;  2VPZ A;  5EPP A;  1H0H A;  2JA5 A;  4GA5 A;  4KDI A;  1EU1 A;  1PT1 A;  1E61 A;  3PLX B;  3GTG A;  2VPX A;  4GA6 A;  4KOD A;  3IR5 A;  1AA6 A;  1E18 A;  1UHD A;  4AYB A;  5DYI A;  3HU3 A;  1Y4Z A;  1QDN A;  1PYU B;  2E2I A;  3QQ8 A;  3GTL A;  3OUG A;  2Y0S A;  2VPW A;  2IV2 X;  1DMR A;  2NYA A;  2R7Z A;  1TWG A;  4CS0 A;  1G8J A;  2VUM A;  3HU2 A;  1SIW A;  1KQG A;  2E2H A;  3QWZ A;  1R27 A;  4DMR A;  1DMS A;  2R92 A;  5B6C A;  2JIM A;  2YU9 A;  1H5N A;  1CZ4 A;  1PYQ A;  4CRZ A;  1OGY A;  3GTK A;  1SFO A;  4AZD A;  1FDO A;  1E5V A;  2NVY A;  1I50 A;  3QQ7 A;  2KI8 A;  3QC8 A;  5T5M D;  4AON B;  1FDI A;  2R93 A;  1AW8 B;  5GLF A;  5DYG A;  2PMZ A;  3H0G A;  4AAY A;  2B63 A;  5FTM A;  3TIW A;  3GTP A;  3DMR A;  1K83 A;  2NVX A;  2C45 A;  2V45 A;  1CR5 A; 
#chains in the Genus database with same CATH topology
 1R7R A;  2E7Z A;  1S3S A;  3ML1 A;  1TWF A;  3X2G A;  1WCM A;  2Q19 X;  1ZC1 A;  3M3G A;  2PWY A;  2JIP A;  3CZB A;  1Y1V A;  4KO8 A;  4AQ7 A;  2JIR A;  2KY9 A;  4KDL A;  2A69 D;  2JIQ A;  2PJJ A;  2Q1C X;  2O5J D;  5FTJ A;  1Y1W A;  2EEO B;  2Q1A X;  3LHD A;  4AS1 A;  1R9T A;  2PNW A;  3GTJ A;  1YLE A;  4AOK B;  2AE0 X;  1G8K A;  2WAQ A;  2V3V A;  3O5A A;  4JS7 A;  3TM7 B;  1BW4 A;  1PPY A;  5H4U A;  1O54 A;  2GF7 A;  3GTO A;  2MM2 A;  3BQB A;  1IW7 D;  2B25 A;  3HKZ A;  5FTK A;  3FPT A;  3CF2 A;  3ZJT A;  3IR6 A;  3CQZ A;  4RV0 A;  3GTM A;  5T5I D;  3SUJ A;  2A6H D;  3X2L A;  1HD5 A;  1TMO A;  2JA6 A;  3GTQ A;  5GLX A;  2PJH B;  5C1B A;  1Q16 A;  1TWC A;  4ZM7 A;  1PQH A;  4CQN A;  4ENG A;  1UHE A;  1WLF A;  1E60 A;  3ZGZ A;  4C2M A;  4D7Z B;  5GM9 A;  1YNJ D;  2WB1 A;  3SUL A;  3D30 A;  1PQF A;  3X2H A;  1QCS A;  1TWH A;  4JJO A;  2JIO A;  3ENG A;  5C18 A;  1CZ5 A;  1I3Q A;  2JV2 A;  3FKI A;  2YUJ A;  3HU1 A;  5FTL A;  2MM0 A;  1Y5I A;  2JA7 A;  2DMR A;  4KLN A;  3IR7 A;  1VC3 B;  3SUM A;  3SUK A;  3X2M A;  4CRY G;  1PQE A;  1PT0 A;  5FTN A;  2NAP A;  1KQF A;  1YNN D;  1TWA A;  4FG2 A;  2YVL A;  4QIW A;  1E32 A;  4ARC A;  2VPY A;  2VPZ A;  5EPP A;  1H0H A;  2KQA A;  2JA5 A;  4GA5 A;  4KDI A;  1EU1 A;  1PT1 A;  1E61 A;  3PLX B;  4JCW A;  3GTG A;  2GFA A;  1OA7 A;  2VPX A;  4GA6 A;  4KOD A;  3IR5 A;  1AA6 A;  1BW3 A;  1E18 A;  1UHD A;  4AYB A;  2LW6 A;  1L8F A;  5DYI A;  3HU3 A;  5D6Y A;  1Y4Z A;  1QDN A;  2A6E D;  2BH0 A;  2GAE A;  1PYU B;  2E2I A;  3QQ8 A;  3GTL A;  3OUG A;  2ENG A;  4UC4 A;  2QQR A;  2Y0S A;  2VPW A;  1WC2 A;  4JP7 A;  4L48 A;  2IV2 X;  2G5D A;  1DMR A;  2NYA A;  3ZJU A;  2CW0 D;  3X2K A;  2R7Z A;  5D6W A;  1TWG A;  4CS0 A;  1G8J A;  2VUM A;  3HU2 A;  1SIW A;  4FER A;  1KQG A;  2E2H A;  3QWZ A;  1R27 A;  4JP6 A;  2Q1D X;  4DMR A;  1SMY D;  1DMS A;  2R92 A;  3X2O A;  3X2J A;  5B6C A;  3FPR A;  2JIM A;  5EQJ B;  3LGA A;  1OA9 A;  2YU9 A;  3X2I A;  1H5N A;  2PI8 A;  4AVR A;  1CZ4 A;  1PYQ A;  5GLY A;  3MB5 A;  4CRZ A;  3X2N A;  1OGY A;  3GTK A;  4ARI A;  2PIC A;  1SFO A;  4AZD A;  1FDO A;  3X2P A;  2BE5 D;  1E5V A;  2NVY A;  2HCZ X;  1I50 A;  2Q18 X;  3FPU A;  2G6G A;  3QQ7 A;  3ZJV A;  5ERG B;  4FFT A;  2KI8 A;  1ZYR D;  3QC8 A;  5T5M D;  2A68 D;  4AON B;  1FDI A;  4FG4 A;  2R93 A;  5D6X A;  1AW8 B;  5GLF A;  1N10 A;  1I9G A;  5CD1 A;  5DYG A;  2PMZ A;  2XDP A;  3H0G A;  4AAY A;  5CCX A;  2B63 A;  5FTM A;  3TIW A;  2QQS A;  3GTP A;  3DMR A;  1K83 A;  4FIB A;  2NVX A;  4NOH A;  2C45 A;  2V45 A;  1CR5 A;  5CCB A; 
#chains in the Genus database with same CATH homology
 1R7R A;  2E7Z A;  1S3S A;  3ML1 A;  1TWF A;  1WCM A;  2Q19 X;  1ZC1 A;  2PWY A;  2JIP A;  3CZB A;  1Y1V A;  4KO8 A;  4AQ7 A;  2JIR A;  2KY9 A;  4KDL A;  2A69 D;  2JIQ A;  2PJJ A;  2Q1C X;  2O5J D;  5FTJ A;  1Y1W A;  2EEO B;  2Q1A X;  3LHD A;  4AS1 A;  1R9T A;  2PNW A;  3GTJ A;  1YLE A;  4AOK B;  2AE0 X;  1G8K A;  2WAQ A;  2V3V A;  3O5A A;  1O54 A;  3TM7 B;  1PPY A;  2GF7 A;  3GTO A;  2MM2 A;  3BQB A;  1IW7 D;  2B25 A;  3HKZ A;  5FTK A;  3FPT A;  3CF2 A;  3ZJT A;  3IR6 A;  3CQZ A;  4RV0 A;  3GTM A;  5T5I D;  2A6H D;  1TMO A;  2JA6 A;  3GTQ A;  2PJH B;  5C1B A;  1Q16 A;  1TWC A;  1PQH A;  4CQN A;  1UHE A;  1WLF A;  1E60 A;  3ZGZ A;  4C2M A;  4D7Z B;  1YNJ D;  2WB1 A;  1PQF A;  1QCS A;  1TWH A;  2JIO A;  5C18 A;  1CZ5 A;  1I3Q A;  2JV2 A;  3FKI A;  2YUJ A;  3HU1 A;  5FTL A;  2MM0 A;  1Y5I A;  2JA7 A;  2DMR A;  4KLN A;  3IR7 A;  1VC3 B;  4CRY G;  1PQE A;  1PT0 A;  5FTN A;  2NAP A;  1KQF A;  1YNN D;  1TWA A;  2YVL A;  4QIW A;  1E32 A;  4ARC A;  2VPY A;  2VPZ A;  5EPP A;  1H0H A;  2JA5 A;  4GA5 A;  4KDI A;  1EU1 A;  1PT1 A;  1E61 A;  3PLX B;  3GTG A;  2GFA A;  2VPX A;  4GA6 A;  4KOD A;  3IR5 A;  1AA6 A;  1E18 A;  1UHD A;  4AYB A;  2LW6 A;  5D6Y A;  5DYI A;  3HU3 A;  1Y4Z A;  1QDN A;  2A6E D;  2GAE A;  1PYU B;  2E2I A;  3QQ8 A;  3GTL A;  3OUG A;  4UC4 A;  2QQR A;  2Y0S A;  2VPW A;  2IV2 X;  2G5D A;  1DMR A;  2NYA A;  3ZJU A;  2CW0 D;  2R7Z A;  5D6W A;  1TWG A;  4CS0 A;  1G8J A;  2VUM A;  3HU2 A;  1SIW A;  1KQG A;  2E2H A;  3QWZ A;  1R27 A;  2Q1D X;  4DMR A;  1SMY D;  1DMS A;  2R92 A;  5B6C A;  3FPR A;  2JIM A;  5EQJ B;  3LGA A;  2YU9 A;  1H5N A;  2PI8 A;  1CZ4 A;  1PYQ A;  3MB5 A;  4CRZ A;  1OGY A;  3GTK A;  4ARI A;  2PIC A;  1SFO A;  4AZD A;  1FDO A;  2BE5 D;  1E5V A;  2NVY A;  1I50 A;  2Q18 X;  3FPU A;  2G6G A;  3QQ7 A;  3ZJV A;  5ERG B;  2KI8 A;  1ZYR D;  3QC8 A;  5T5M D;  2A68 D;  4AON B;  1FDI A;  2R93 A;  5D6X A;  1AW8 B;  5GLF A;  1I9G A;  5CD1 A;  5DYG A;  2PMZ A;  2XDP A;  3H0G A;  4AAY A;  5CCX A;  2B63 A;  5FTM A;  3TIW A;  2QQS A;  3GTP A;  3DMR A;  1K83 A;  4FIB A;  2NVX A;  4NOH A;  2C45 A;  2V45 A;  1CR5 A;  5CCB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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