4RV0A

Crystal structure of tn complex
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
167
structure length
159
Chain Sequence
GAMEPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding, transport protein
source organism Drosophila melanogaster
publication title Crystal structure of TN complex
rcsb
molecule keywords Transitional endoplasmic reticulum ATPase TER94
total genus 44
structure length 159
sequence length 167
chains with identical sequence C, E, G
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2014-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4rv0A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 4rv0A02
2JIOA 3GTQA 3HU3A 4DMRA 2YUJA 4GA6A 1TWGA 1G8KA 5DYIA 1IW7D 1PPYA 1Y1WA 1EU1A 1PYQA 1PQEA 2WB1A 1KQFA 2VPWA 3QC8A 2NAPA 2VPYA 2PMZA 1YLEA 3ML1A 2KI8A 1TMOA 1WCMA 2V45A 4KODA 5T5ID 4CRZA 2NVYA 3IR7A 5EPPA 1TWAA 3QQ8A 3IR6A 3QWZA 4RV0A 1FDOA 1OGYA 2VPXA 4CRYG 4AYBA 3GTKA 4KO8A 1ZC1A 3HKZA 5FTNA 3GTLA 1R9TA 2WAQA 1AW8B 2JV2A 1G8JA 5GLFA 5C18A 2JA7A 2R93A 2E2IA 1PYUB 1DMSA 1R27A 1PT1A 1TWHA 3CF2A 2E2HA 3H0GA 4KDIA 1I50A 1WLFA 5FTLA 3CQZA 2VPZA 1KQGA 2JA5A 1S3SA 1Q16A 4C2MA 3HU1A 1K83A 3GTMA 3HU2A 3QQ7A 5T5MD 4AAYA 3GTPA 1CZ5A 5DYGA 1E61A 1H0HA 2PJHB 4AOKB 3TM7B 2V3VA 3FKIA 1TWFA 1R7RA 1Y5IA 2R7ZA 3GTGA 1E5VA 5C1BA 1PQHA 5FTMA 2C45A 4GA5A 2DMRA 4KLNA 3PLXB 3GTOA 2JIRA 2IV2X 2JIPA 1PT0A 3IR5A 4AZDA 4CS0A 1UHDA 1E32A 2R92A 1QCSA 2B63A 1H5NA 4KDLA 2YU9A 4D7ZB 2JIMA 4AONB 1I3QA 1CZ4A 1DMRA 1SFOA 1CR5A 2JA6A 1Y4ZA 1QDNA 3TIWA 1E18A 1TWCA 5FTKA 3OUGA 3DMRA 2EEOB 2JIQA 2VUMA 2E7ZA 1PQFA 3GTJA 1Y1VA 1FDIA 1AA6A 2Y0SA 1SIWA 1E60A 1VC3B 5B6CA 3O5AA 4QIWA 5FTJA 2NYAA 2NVXA 1UHEA
chains in the Genus database with same CATH superfamily
2JIOA 3GTQA 2GFAA 3HU3A 4FG2A 4DMRA 2YUJA 4GA6A 1TWGA 1G8KA 5DYIA 1IW7D 2Q19X 1PPYA 3SULA 1Y1WA 1EU1A 1PYQA 1PQEA 2WB1A 2ENGA 2VPWA 3QC8A 1KQFA 2NAPA 4CQNA 2VPYA 2PMZA 1YLEA 3ML1A 2KI8A 4ENGA 1TMOA 3FPTA 3MB5A 1WCMA 4FIBA 2V45A 1ZYRD 4KODA 5T5ID 5GLYA 4CRZA 2NVYA 3IR7A 5EPPA 1TWAA 2Q1CX 1OA9A 3QQ8A 2HCZX 4UC4A 2PWYA 3IR6A 4ARIA 3QWZA 4RV0A 3SUMA 5CCBA 1FDOA 3CZBA 5D6WA 1OGYA 2KY9A 2VPXA 4CRYG 4JP7A 3X2IA 2A69D 4AYBA 3GTKA 5ERGB 4KO8A 1ZC1A 4JS7A 2QQSA 2YVLA 1L8FA 3HKZA 5FTNA 2KQAA 3GTLA 1R9TA 3ZJVA 2WAQA 1AW8B 2JV2A 1G8JA 5GLFA 3ZGZA 5C18A 2JA7A 2A6ED 2MM0A 3X2OA 2R93A 3BQBA 2QQRA 4AQ7A 1N10A 2E2IA 1PYUB 1DMSA 1R27A 1PT1A 1TWHA 3CF2A 2AE0X 2E2HA 4ARCA 3H0GA 4KDIA 2PICA 1I50A 3FPRA 1WLFA 2PJJA 5FTLA 3LHDA 3CQZA 4FG4A 2VPZA 1KQGA 2JA5A 1S3SA 1YNJD 1BW4A 1Q16A 4AVRA 3HU1A 2PI8A 4C2MA 1K83A 3HU2A 3QQ7A 4FERA 3GTMA 2B25A 5T5MD 4AAYA 1YNND 3GTPA 1CZ5A 5DYGA 5D6YA 1E61A 1H0HA 2PJHB 5CD1A 4AOKB 3ZJUA 2CW0D 3TM7B 5EQJB 2V3VA 3FKIA 2PNWA 1TWFA 2G6GA 3X2JA 1R7RA 4JCWA 1Y5IA 2R7ZA 3FPUA 2O5JD 3GTGA 1E5VA 5C1BA 1BW3A 1PQHA 5FTMA 3X2KA 4JP6A 2C45A 4GA5A 3X2LA 2DMRA 3M3GA 3SUKA 2XDPA 2A68D 4ZM7A 4KLNA 3PLXB 3GTOA 2A6HD 3X2NA 2JIRA 2IV2X 2JIPA 1PT0A 3IR5A 4AZDA 4CS0A 1UHDA 1OA7A 4L48A 1E32A 2R92A 2LW6A 2Q1DX 3ENGA 1QCSA 2B63A 5CCXA 1H5NA 4KDLA 2YU9A 4D7ZB 2GF7A 2JIMA 3X2MA 4JJOA 4AONB 1I3QA 1CZ4A 2BE5D 4FFTA 1O54A 1DMRA 2G5DA 3SUJA 3X2PA 5D6XA 1SFOA 1CR5A 2BH0A 2JA6A 4NOHA 1Y4ZA 1SMYD 1QDNA 3TIWA 1E18A 1HD5A 1TWCA 5FTKA 3D30A 3OUGA 3DMRA 1I9GA 2Q18X 5GLXA 5GM9A 2EEOB 3X2HA 2JIQA 2VUMA 2E7ZA 1PQFA 3GTJA 3ZJTA 1Y1VA 1FDIA 3X2GA 2MM2A 1AA6A 2Y0SA 1WC2A 1SIWA 1E60A 1VC3B 5H4UA 5B6CA 3O5AA 4QIWA 2GAEA 5FTJA 2NYAA 2Q1AX 2NVXA 4AS1A 1UHEA 3LGAA
chains in the Genus database with same CATH topology
2JIOA 3GTQA 2GFAA 3HU3A 4DMRA 2YUJA 4GA6A 1TWGA 1G8KA 5DYIA 1IW7D 2Q19X 1PPYA 1Y1WA 1EU1A 1PYQA 1PQEA 2WB1A 1KQFA 2VPWA 3QC8A 2NAPA 4CQNA 2VPYA 2PMZA 1YLEA 3ML1A 2KI8A 3MB5A 1TMOA 3FPTA 1WCMA 4FIBA 2V45A 1ZYRD 4KODA 5T5ID 4CRZA 2NVYA 3IR7A 5EPPA 1TWAA 2Q1CX 3QQ8A 4UC4A 4ARIA 2PWYA 3IR6A 3QWZA 4RV0A 5CCBA 1FDOA 3CZBA 5D6WA 1OGYA 2KY9A 2VPXA 4CRYG 2A69D 4AYBA 3GTKA 5ERGB 4KO8A 1ZC1A 2QQSA 2YVLA 3HKZA 5FTNA 3GTLA 1R9TA 3ZJVA 2WAQA 1AW8B 2JV2A 1G8JA 5GLFA 3ZGZA 5C18A 2JA7A 2A6ED 2MM0A 2R93A 3BQBA 4AQ7A 2QQRA 2E2IA 1PYUB 1DMSA 1R27A 1PT1A 1TWHA 3CF2A 2AE0X 2E2HA 4ARCA 3H0GA 4KDIA 2PICA 1I50A 3FPRA 1WLFA 2PJJA 5FTLA 3LHDA 3CQZA 2VPZA 1KQGA 2JA5A 1S3SA 1YNJD 1Q16A 4C2MA 3HU1A 2PI8A 1K83A 3GTMA 3HU2A 3QQ7A 2B25A 5T5MD 4AAYA 1YNND 3GTPA 1CZ5A 5DYGA 5D6YA 1E61A 1H0HA 2PJHB 5CD1A 4AOKB 3ZJUA 2CW0D 3TM7B 5EQJB 2V3VA 3FKIA 2PNWA 1TWFA 2G6GA 1R7RA 1Y5IA 2R7ZA 3FPUA 2O5JD 3GTGA 1E5VA 5C1BA 1PQHA 5FTMA 2C45A 4GA5A 2DMRA 2XDPA 2A68D 4KLNA 3PLXB 3GTOA 2A6HD 2JIRA 2IV2X 2JIPA 1PT0A 3IR5A 4AZDA 4CS0A 1UHDA 1E32A 2R92A 2LW6A 2Q1DX 1QCSA 2B63A 5CCXA 1H5NA 4KDLA 2YU9A 4D7ZB 2GF7A 2JIMA 4AONB 1I3QA 1CZ4A 2BE5D 1O54A 5D6XA 1DMRA 2G5DA 1SFOA 1CR5A 2JA6A 4NOHA 1Y4ZA 1SMYD 1QDNA 3TIWA 1E18A 1TWCA 5FTKA 3OUGA 3DMRA 1I9GA 2Q18X 2EEOB 2JIQA 2VUMA 2E7ZA 1PQFA 3GTJA 3ZJTA 1Y1VA 1FDIA 2MM2A 1AA6A 2Y0SA 1SIWA 1E60A 1VC3B 5B6CA 3O5AA 4QIWA 2GAEA 5FTJA 2NYAA 2Q1AX 2NVXA 4AS1A 1UHEA 3LGAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JIO A;  3GTQ A;  3HU3 A;  4DMR A;  2YUJ A;  4GA6 A;  1TWG A;  1G8K A;  5DYI A;  1IW7 D;  1PPY A;  1Y1W A;  1EU1 A;  1PYQ A;  1PQE A;  2WB1 A;  1KQF A;  2VPW A;  3QC8 A;  2NAP A;  2VPY A;  2PMZ A;  1YLE A;  3ML1 A;  2KI8 A;  1TMO A;  1WCM A;  2V45 A;  4KOD A;  5T5I D;  4CRZ A;  2NVY A;  3IR7 A;  5EPP A;  1TWA A;  3QQ8 A;  3IR6 A;  3QWZ A;  4RV0 A;  1FDO A;  1OGY A;  2VPX A;  4CRY G;  4AYB A;  3GTK A;  4KO8 A;  1ZC1 A;  3HKZ A;  5FTN A;  3GTL A;  1R9T A;  2WAQ A;  1AW8 B;  2JV2 A;  1G8J A;  5GLF A;  5C18 A;  2JA7 A;  2R93 A;  2E2I A;  1PYU B;  1DMS A;  1R27 A;  1PT1 A;  1TWH A;  3CF2 A;  2E2H A;  3H0G A;  4KDI A;  1I50 A;  1WLF A;  5FTL A;  3CQZ A;  2VPZ A;  1KQG A;  2JA5 A;  1S3S A;  1Q16 A;  4C2M A;  3HU1 A;  1K83 A;  3GTM A;  3HU2 A;  3QQ7 A;  5T5M D;  4AAY A;  3GTP A;  1CZ5 A;  5DYG A;  1E61 A;  1H0H A;  2PJH B;  4AOK B;  3TM7 B;  2V3V A;  3FKI A;  1TWF A;  1R7R A;  1Y5I A;  2R7Z A;  3GTG A;  1E5V A;  5C1B A;  1PQH A;  5FTM A;  2C45 A;  4GA5 A;  2DMR A;  4KLN A;  3PLX B;  3GTO A;  2JIR A;  2IV2 X;  2JIP A;  1PT0 A;  3IR5 A;  4AZD A;  4CS0 A;  1UHD A;  1E32 A;  2R92 A;  1QCS A;  2B63 A;  1H5N A;  4KDL A;  2YU9 A;  4D7Z B;  2JIM A;  4AON B;  1I3Q A;  1CZ4 A;  1DMR A;  1SFO A;  1CR5 A;  2JA6 A;  1Y4Z A;  1QDN A;  3TIW A;  1E18 A;  1TWC A;  5FTK A;  3OUG A;  3DMR A;  2EEO B;  2JIQ A;  2VUM A;  2E7Z A;  1PQF A;  3GTJ A;  1Y1V A;  1FDI A;  1AA6 A;  2Y0S A;  1SIW A;  1E60 A;  1VC3 B;  5B6C A;  3O5A A;  4QIW A;  5FTJ A;  2NYA A;  2NVX A;  1UHE A; 
#chains in the Genus database with same CATH topology
 2JIO A;  3GTQ A;  2GFA A;  3HU3 A;  4FG2 A;  4DMR A;  2YUJ A;  4GA6 A;  1TWG A;  1G8K A;  5DYI A;  1IW7 D;  2Q19 X;  1PPY A;  3SUL A;  1Y1W A;  1EU1 A;  1PYQ A;  1PQE A;  2WB1 A;  2ENG A;  2VPW A;  3QC8 A;  1KQF A;  2NAP A;  4CQN A;  2VPY A;  2PMZ A;  1YLE A;  3ML1 A;  2KI8 A;  4ENG A;  1TMO A;  3FPT A;  3MB5 A;  1WCM A;  4FIB A;  2V45 A;  1ZYR D;  4KOD A;  5T5I D;  5GLY A;  4CRZ A;  2NVY A;  3IR7 A;  5EPP A;  1TWA A;  2Q1C X;  1OA9 A;  3QQ8 A;  2HCZ X;  4UC4 A;  2PWY A;  3IR6 A;  4ARI A;  3QWZ A;  4RV0 A;  3SUM A;  5CCB A;  1FDO A;  3CZB A;  5D6W A;  1OGY A;  2KY9 A;  2VPX A;  4CRY G;  4JP7 A;  3X2I A;  2A69 D;  4AYB A;  3GTK A;  5ERG B;  4KO8 A;  1ZC1 A;  4JS7 A;  2QQS A;  2YVL A;  1L8F A;  3HKZ A;  5FTN A;  2KQA A;  3GTL A;  1R9T A;  3ZJV A;  2WAQ A;  1AW8 B;  2JV2 A;  1G8J A;  5GLF A;  3ZGZ A;  5C18 A;  2JA7 A;  2A6E D;  2MM0 A;  3X2O A;  2R93 A;  3BQB A;  2QQR A;  4AQ7 A;  1N10 A;  2E2I A;  1PYU B;  1DMS A;  1R27 A;  1PT1 A;  1TWH A;  3CF2 A;  2AE0 X;  2E2H A;  4ARC A;  3H0G A;  4KDI A;  2PIC A;  1I50 A;  3FPR A;  1WLF A;  2PJJ A;  5FTL A;  3LHD A;  3CQZ A;  4FG4 A;  2VPZ A;  1KQG A;  2JA5 A;  1S3S A;  1YNJ D;  1BW4 A;  1Q16 A;  4AVR A;  3HU1 A;  2PI8 A;  4C2M A;  1K83 A;  3HU2 A;  3QQ7 A;  4FER A;  3GTM A;  2B25 A;  5T5M D;  4AAY A;  1YNN D;  3GTP A;  1CZ5 A;  5DYG A;  5D6Y A;  1E61 A;  1H0H A;  2PJH B;  5CD1 A;  4AOK B;  3ZJU A;  2CW0 D;  3TM7 B;  5EQJ B;  2V3V A;  3FKI A;  2PNW A;  1TWF A;  2G6G A;  3X2J A;  1R7R A;  4JCW A;  1Y5I A;  2R7Z A;  3FPU A;  2O5J D;  3GTG A;  1E5V A;  5C1B A;  1BW3 A;  1PQH A;  5FTM A;  3X2K A;  4JP6 A;  2C45 A;  4GA5 A;  3X2L A;  2DMR A;  3M3G A;  3SUK A;  2XDP A;  2A68 D;  4ZM7 A;  4KLN A;  3PLX B;  3GTO A;  2A6H D;  3X2N A;  2JIR A;  2IV2 X;  2JIP A;  1PT0 A;  3IR5 A;  4AZD A;  4CS0 A;  1UHD A;  1OA7 A;  4L48 A;  1E32 A;  2R92 A;  2LW6 A;  2Q1D X;  3ENG A;  1QCS A;  2B63 A;  5CCX A;  1H5N A;  4KDL A;  2YU9 A;  4D7Z B;  2GF7 A;  2JIM A;  3X2M A;  4JJO A;  4AON B;  1I3Q A;  1CZ4 A;  2BE5 D;  4FFT A;  1O54 A;  1DMR A;  2G5D A;  3SUJ A;  3X2P A;  5D6X A;  1SFO A;  1CR5 A;  2BH0 A;  2JA6 A;  4NOH A;  1Y4Z A;  1SMY D;  1QDN A;  3TIW A;  1E18 A;  1HD5 A;  1TWC A;  5FTK A;  3D30 A;  3OUG A;  3DMR A;  1I9G A;  2Q18 X;  5GLX A;  5GM9 A;  2EEO B;  3X2H A;  2JIQ A;  2VUM A;  2E7Z A;  1PQF A;  3GTJ A;  3ZJT A;  1Y1V A;  1FDI A;  3X2G A;  2MM2 A;  1AA6 A;  2Y0S A;  1WC2 A;  1SIW A;  1E60 A;  1VC3 B;  5H4U A;  5B6C A;  3O5A A;  4QIW A;  2GAE A;  5FTJ A;  2NYA A;  2Q1A X;  2NVX A;  4AS1 A;  1UHE A;  3LGA A; 
#chains in the Genus database with same CATH homology
 2JIO A;  3GTQ A;  2GFA A;  3HU3 A;  4DMR A;  2YUJ A;  4GA6 A;  1TWG A;  1G8K A;  5DYI A;  1IW7 D;  2Q19 X;  1PPY A;  1Y1W A;  1EU1 A;  1PYQ A;  1PQE A;  2WB1 A;  1KQF A;  2VPW A;  3QC8 A;  2NAP A;  4CQN A;  2VPY A;  2PMZ A;  1YLE A;  3ML1 A;  2KI8 A;  3MB5 A;  1TMO A;  3FPT A;  1WCM A;  4FIB A;  2V45 A;  1ZYR D;  4KOD A;  5T5I D;  4CRZ A;  2NVY A;  3IR7 A;  5EPP A;  1TWA A;  2Q1C X;  3QQ8 A;  4UC4 A;  4ARI A;  2PWY A;  3IR6 A;  3QWZ A;  4RV0 A;  5CCB A;  1FDO A;  3CZB A;  5D6W A;  1OGY A;  2KY9 A;  2VPX A;  4CRY G;  2A69 D;  4AYB A;  3GTK A;  5ERG B;  4KO8 A;  1ZC1 A;  2QQS A;  2YVL A;  3HKZ A;  5FTN A;  3GTL A;  1R9T A;  3ZJV A;  2WAQ A;  1AW8 B;  2JV2 A;  1G8J A;  5GLF A;  3ZGZ A;  5C18 A;  2JA7 A;  2A6E D;  2MM0 A;  2R93 A;  3BQB A;  4AQ7 A;  2QQR A;  2E2I A;  1PYU B;  1DMS A;  1R27 A;  1PT1 A;  1TWH A;  3CF2 A;  2AE0 X;  2E2H A;  4ARC A;  3H0G A;  4KDI A;  2PIC A;  1I50 A;  3FPR A;  1WLF A;  2PJJ A;  5FTL A;  3LHD A;  3CQZ A;  2VPZ A;  1KQG A;  2JA5 A;  1S3S A;  1YNJ D;  1Q16 A;  4C2M A;  3HU1 A;  2PI8 A;  1K83 A;  3GTM A;  3HU2 A;  3QQ7 A;  2B25 A;  5T5M D;  4AAY A;  1YNN D;  3GTP A;  1CZ5 A;  5DYG A;  5D6Y A;  1E61 A;  1H0H A;  2PJH B;  5CD1 A;  4AOK B;  3ZJU A;  2CW0 D;  3TM7 B;  5EQJ B;  2V3V A;  3FKI A;  2PNW A;  1TWF A;  2G6G A;  1R7R A;  1Y5I A;  2R7Z A;  3FPU A;  2O5J D;  3GTG A;  1E5V A;  5C1B A;  1PQH A;  5FTM A;  2C45 A;  4GA5 A;  2DMR A;  2XDP A;  2A68 D;  4KLN A;  3PLX B;  3GTO A;  2A6H D;  2JIR A;  2IV2 X;  2JIP A;  1PT0 A;  3IR5 A;  4AZD A;  4CS0 A;  1UHD A;  1E32 A;  2R92 A;  2LW6 A;  2Q1D X;  1QCS A;  2B63 A;  5CCX A;  1H5N A;  4KDL A;  2YU9 A;  4D7Z B;  2GF7 A;  2JIM A;  4AON B;  1I3Q A;  1CZ4 A;  2BE5 D;  1O54 A;  5D6X A;  1DMR A;  2G5D A;  1SFO A;  1CR5 A;  2JA6 A;  4NOH A;  1Y4Z A;  1SMY D;  1QDN A;  3TIW A;  1E18 A;  1TWC A;  5FTK A;  3OUG A;  3DMR A;  1I9G A;  2Q18 X;  2EEO B;  2JIQ A;  2VUM A;  2E7Z A;  1PQF A;  3GTJ A;  3ZJT A;  1Y1V A;  1FDI A;  2MM2 A;  1AA6 A;  2Y0S A;  1SIW A;  1E60 A;  1VC3 B;  5B6C A;  3O5A A;  4QIW A;  2GAE A;  5FTJ A;  2NYA A;  2Q1A X;  2NVX A;  4AS1 A;  1UHE A;  3LGA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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