4RV7A

Characterization of an essential diadenylate cyclase
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
159
structure length
159
Chain Sequence
SSYGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Analysis of the Essential Diadenylate Cyclase CdaA from Listeria monocytogenes.
pubmed doi rcsb
molecule tags Transferase
source organism Listeria monocytogenes egd-e
molecule keywords Diadenylate cyclase
total genus 48
structure length 159
sequence length 159
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.85: Diadenylate cyclase.
pdb deposition date 2014-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02457 DisA_N DisA bacterial checkpoint controller nucleotide-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1700.10 Alpha Beta 3-Layer(aba) Sandwich YojJ-like (1 DNA integrity scanning protein, DisA, N-terminal domain 4rv7A00
3C23A 3C1YA 4YXJA 4YVZA 3C1ZA 4YXMA 2FB5A 4RV7A 3C21A
chains in the Genus database with same CATH superfamily
3C23A 3C1YA 4YXJA 4YVZA 3C1ZA 4YXMA 2FB5A 4RV7A 3C21A
chains in the Genus database with same CATH topology
3C23A 3C1YA 4YXJA 4YVZA 3C1ZA 4YXMA 2FB5A 4RV7A 3C21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C23 A;  3C1Y A;  4YXJ A;  4YVZ A;  3C1Z A;  4YXM A;  2FB5 A;  4RV7 A;  3C21 A; 
#chains in the Genus database with same CATH topology
 3C23 A;  3C1Y A;  4YXJ A;  4YVZ A;  3C1Z A;  4YXM A;  2FB5 A;  4RV7 A;  3C21 A; 
#chains in the Genus database with same CATH homology
 3C23 A;  3C1Y A;  4YXJ A;  4YVZ A;  3C1Z A;  4YXM A;  2FB5 A;  4RV7 A;  3C21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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