4TJXA

Crystal structure of protease-associated domain of arabidopsis vsr1 in complex with aleurain peptide
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
160
structure length
153
Chain Sequence
VEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPDYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Vacuolar-sorting receptor 1
publication title How vacuolar sorting receptor proteins interact with their cargo proteins: crystal structures of apo and cargo-bound forms of the protease-associated domain from an Arabidopsis vacuolar sorting receptor.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 44
structure length 153
sequence length 160
ec nomenclature
pdb deposition date 2014-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02225 PA PA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4tjxA00
2C6PA 2XEFA 4OC1A 4KNGE 4C8PA 5ELYA 4C8TA 4NGQA 1Z8LA 3SJXA 4NGTA 3S9NA 4LQGA 4MCSA 4C8AA 3BXMA 4C8UA 4JZ0A 3I74A 4NGRA 4TJXA 2JBKA 4JYWA 4OC5A 4P45A 1XF1A 3D7GA 3FECA 3SJFA 2XEIA 1Y9ZA 3S9MA 4P4DA 4TWEA 4P4BA 3EIFA 5IB9A 3ICUA 3IWWA 1CX8A 2XEGA 3BHXA 5D29A 3I6SA 4C9UA 3BI0A 2C6CA 3FEDA 4C86A 4C99A 4P4IA 2OR4A 3VTAA 4P44A 4MCQA 4P4JA 3D7DA 3FEEA 3IIBA 4NGPA 3SJGA 2EK8A 4C9AA 4OC3A 3RBUA 4NGMA 4OC0A 1DE4C 3SJEA 3D7HA 3S9LA 4C9EA 2PVWA 2C6GA 2PVVA 4OC4A 4C8FA 4C8CA 1V6CA 4CDJA 3D7FA 4MCPA 4NGNA 2OOTA 4OMEA 3KASA 1WVMA 4MCRA 4OC2A 4C9RA 5F09A 4C9VA 4TJVA 4P4EA 4C85A 4CDKA 4YN3A 2EK9A 2JBJA 4X3RA 4P4FA 4W9YA 4C84A 2XEJA 2CIJA 4NGSA 3BI1A 3FF3A
chains in the Genus database with same CATH superfamily
3EZAA 2C6PA 2EZBA 2HROA 2XEFA 4OC1A 4KNGE 4C8PA 5ELYA 4C8TA 4NGQA 1KC7A 1Z8LA 1VBHA 3SJXA 4NGTA 1Q5XA 4E5SA 4EYSA 3S9NA 3GJZA 4LQGA 4MCSA 4C8AA 3BXMA 2X0SA 4C8UA 4JZ0A 1M6VB 3I74A 3EZEA 4NGRA 1CS0B 3TLZA 3C8OA 4TJXA 3EZBA 5F1YA 2EZAA 2JBKA 4JYWA 5IR2A 2GP4A 4OC5A 3TLBA 4P45A 5F5XA 1ZRSA 1XF1A 3D7GA 2PCNA 1NBWA 3FECA 3SJFA 3T07A 2XEIA 1Y9ZA 3S9MA 1C3OB 2D0PA 2E28A 4H1HA 4P4DA 4TWEA 4J0NA 4IIYA 4P4BA 3EIFA 2YJVA 3TLEA 2HWGA 3TLCA 5IB9A 3ICUA 3K4IA 3IWWA 1CX8A 2AUNA 2XEGA 3BHXA 4E94A 1R61A 5D29A 2MP0A 1VBGA 3I6SA 4C9UA 5FD8A 3BI0A 2C6CA 3FEDA 4C86A 4C99A 2OLSA 3K9TA 4P4IA 2OR4A 2HI6A 1GGOA 3VTAA 1JDBC 4P44A 1KEEB 4MCQA 4P4JA 3D7DA 3FEEA 3IIBA 4NGPA 3NOJA 3SJGA 2EK8A 4C9AA 1C30B 2D0OA 3G23A 4OC3A 3RBUA 2DIKA 4NGMA 1ZL0A 4OC0A 1DE4C 3U1BA 4COGA 3KRVA 4IIXA 3SJEA 3D7HA 5JVLA 3S9LA 1EZBA 1A9XB 2R82A 1BXRB 2B0AA 1EZAA 3TLGA 4C9EA 2PVWA 2AUMA 2C6GA 1T36B 2PVVA 4OC4A 4C8FA 4C8CA 5K99A 3SR3A 1V6CA 3T5MA 2EZCA 4CDJA 3TYXA 1ZYMA 3D7FA 4MCPA 3TLAA 3TLGB 4NGNA 1CE8B 2OOTA 4MI1A 4OMEA 5F9MA 3KASA 1WVMA 4CO9A 4MCRA 2FM4A 4INJA 4OC2A 4C9RA 5F09A 4M8DA 4JVOA 4TJVA 1J3LA 4C9VA 4P4EA 2YJTA 4COBA 4C85A 2C5QA 4CDKA 4YN3A 2EK9A 4CZ1A 2JBJA 4X3RA 1KBLA 1DIKA 3T0TA 5JYBA 4P4FA 4W9YA 3TLYA 3T05A 4C84A 1NXJA 2XEJA 1JDEA 2CIJA 4MJXA 4NGSA 3BI1A 3FF3A 1VI4A
chains in the Genus database with same CATH topology
2C6PA 2XEFA 4OC1A 4KNGE 4C8PA 5ELYA 4C8TA 4NGQA 1Z8LA 3SJXA 4NGTA 3S9NA 4LQGA 4MCSA 4C8AA 3BXMA 4C8UA 4JZ0A 3I74A 4NGRA 4TJXA 2JBKA 4JYWA 5IR2A 2GP4A 4OC5A 4P45A 1XF1A 3D7GA 3FECA 3SJFA 2XEIA 1Y9ZA 3S9MA 4P4DA 4TWEA 4P4BA 3EIFA 5IB9A 3ICUA 3IWWA 1CX8A 2XEGA 3BHXA 5D29A 3I6SA 4C9UA 3BI0A 2C6CA 3FEDA 4C86A 4C99A 3K9TA 4P4IA 2OR4A 3VTAA 4P44A 4MCQA 4P4JA 3D7DA 3FEEA 3IIBA 4NGPA 3SJGA 2EK8A 4C9AA 4OC3A 3RBUA 4NGMA 4OC0A 1DE4C 3SJEA 3D7HA 3S9LA 4C9EA 2PVWA 2C6GA 2PVVA 4OC4A 4C8FA 4C8CA 1V6CA 4CDJA 3D7FA 4MCPA 4NGNA 2OOTA 4OMEA 3KASA 1WVMA 4MCRA 4OC2A 4C9RA 5F09A 4C9VA 4TJVA 4P4EA 4C85A 2C5QA 4CDKA 4YN3A 2EK9A 2JBJA 4X3RA 4P4FA 4W9YA 4C84A 2XEJA 2CIJA 4NGSA 3BI1A 3FF3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C6P A;  2XEF A;  4OC1 A;  4KNG E;  4C8P A;  5ELY A;  4C8T A;  4NGQ A;  1Z8L A;  3SJX A;  4NGT A;  3S9N A;  4LQG A;  4MCS A;  4C8A A;  3BXM A;  4C8U A;  4JZ0 A;  3I74 A;  4NGR A;  4TJX A;  2JBK A;  4JYW A;  4OC5 A;  4P45 A;  1XF1 A;  3D7G A;  3FEC A;  3SJF A;  2XEI A;  1Y9Z A;  3S9M A;  4P4D A;  4TWE A;  4P4B A;  3EIF A;  5IB9 A;  3ICU A;  3IWW A;  1CX8 A;  2XEG A;  3BHX A;  5D29 A;  3I6S A;  4C9U A;  3BI0 A;  2C6C A;  3FED A;  4C86 A;  4C99 A;  4P4I A;  2OR4 A;  3VTA A;  4P44 A;  4MCQ A;  4P4J A;  3D7D A;  3FEE A;  3IIB A;  4NGP A;  3SJG A;  2EK8 A;  4C9A A;  4OC3 A;  3RBU A;  4NGM A;  4OC0 A;  1DE4 C;  3SJE A;  3D7H A;  3S9L A;  4C9E A;  2PVW A;  2C6G A;  2PVV A;  4OC4 A;  4C8F A;  4C8C A;  1V6C A;  4CDJ A;  3D7F A;  4MCP A;  4NGN A;  2OOT A;  4OME A;  3KAS A;  1WVM A;  4MCR A;  4OC2 A;  4C9R A;  5F09 A;  4C9V A;  4TJV A;  4P4E A;  4C85 A;  4CDK A;  4YN3 A;  2EK9 A;  2JBJ A;  4X3R A;  4P4F A;  4W9Y A;  4C84 A;  2XEJ A;  2CIJ A;  4NGS A;  3BI1 A;  3FF3 A; 
#chains in the Genus database with same CATH topology
 3EZA A;  2C6P A;  2EZB A;  2HRO A;  2XEF A;  4OC1 A;  4KNG E;  4C8P A;  5ELY A;  4C8T A;  4NGQ A;  1KC7 A;  1Z8L A;  1VBH A;  3SJX A;  4NGT A;  1Q5X A;  4E5S A;  4EYS A;  3S9N A;  3GJZ A;  4LQG A;  4MCS A;  4C8A A;  3BXM A;  2X0S A;  4C8U A;  4JZ0 A;  1M6V B;  3I74 A;  3EZE A;  4NGR A;  1CS0 B;  3TLZ A;  3C8O A;  4TJX A;  3EZB A;  5F1Y A;  2EZA A;  2JBK A;  4JYW A;  5IR2 A;  2GP4 A;  4OC5 A;  3TLB A;  4P45 A;  5F5X A;  1ZRS A;  1XF1 A;  3D7G A;  2PCN A;  1NBW A;  3FEC A;  3SJF A;  3T07 A;  2XEI A;  1Y9Z A;  3S9M A;  1C3O B;  2D0P A;  2E28 A;  4H1H A;  4P4D A;  4TWE A;  4J0N A;  4IIY A;  4P4B A;  3EIF A;  2YJV A;  3TLE A;  2HWG A;  3TLC A;  5IB9 A;  3ICU A;  3K4I A;  3IWW A;  1CX8 A;  2AUN A;  2XEG A;  3BHX A;  4E94 A;  1R61 A;  5D29 A;  2MP0 A;  1VBG A;  3I6S A;  4C9U A;  5FD8 A;  3BI0 A;  2C6C A;  3FED A;  4C86 A;  4C99 A;  2OLS A;  3K9T A;  4P4I A;  2OR4 A;  2HI6 A;  1GGO A;  3VTA A;  1JDB C;  4P44 A;  1KEE B;  4MCQ A;  4P4J A;  3D7D A;  3FEE A;  3IIB A;  4NGP A;  3NOJ A;  3SJG A;  2EK8 A;  4C9A A;  1C30 B;  2D0O A;  3G23 A;  4OC3 A;  3RBU A;  2DIK A;  4NGM A;  1ZL0 A;  4OC0 A;  1DE4 C;  3U1B A;  4COG A;  3KRV A;  4IIX A;  3SJE A;  3D7H A;  5JVL A;  3S9L A;  1EZB A;  1A9X B;  2R82 A;  1BXR B;  2B0A A;  1EZA A;  3TLG A;  4C9E A;  2PVW A;  2AUM A;  2C6G A;  1T36 B;  2PVV A;  4OC4 A;  4C8F A;  4C8C A;  5K99 A;  3SR3 A;  1V6C A;  3T5M A;  2EZC A;  4CDJ A;  3TYX A;  1ZYM A;  3D7F A;  4MCP A;  3TLA A;  3TLG B;  4NGN A;  1CE8 B;  2OOT A;  4MI1 A;  4OME A;  5F9M A;  3KAS A;  1WVM A;  4CO9 A;  4MCR A;  2FM4 A;  4INJ A;  4OC2 A;  4C9R A;  5F09 A;  4M8D A;  4JVO A;  4TJV A;  1J3L A;  4C9V A;  4P4E A;  2YJT A;  4COB A;  4C85 A;  2C5Q A;  4CDK A;  4YN3 A;  2EK9 A;  4CZ1 A;  2JBJ A;  4X3R A;  1KBL A;  1DIK A;  3T0T A;  5JYB A;  4P4F A;  4W9Y A;  3TLY A;  3T05 A;  4C84 A;  1NXJ A;  2XEJ A;  1JDE A;  2CIJ A;  4MJX A;  4NGS A;  3BI1 A;  3FF3 A;  1VI4 A; 
#chains in the Genus database with same CATH homology
 2C6P A;  2XEF A;  4OC1 A;  4KNG E;  4C8P A;  5ELY A;  4C8T A;  4NGQ A;  1Z8L A;  3SJX A;  4NGT A;  3S9N A;  4LQG A;  4MCS A;  4C8A A;  3BXM A;  4C8U A;  4JZ0 A;  3I74 A;  4NGR A;  4TJX A;  2JBK A;  4JYW A;  5IR2 A;  2GP4 A;  4OC5 A;  4P45 A;  1XF1 A;  3D7G A;  3FEC A;  3SJF A;  2XEI A;  1Y9Z A;  3S9M A;  4P4D A;  4TWE A;  4P4B A;  3EIF A;  5IB9 A;  3ICU A;  3IWW A;  1CX8 A;  2XEG A;  3BHX A;  5D29 A;  3I6S A;  4C9U A;  3BI0 A;  2C6C A;  3FED A;  4C86 A;  4C99 A;  3K9T A;  4P4I A;  2OR4 A;  3VTA A;  4P44 A;  4MCQ A;  4P4J A;  3D7D A;  3FEE A;  3IIB A;  4NGP A;  3SJG A;  2EK8 A;  4C9A A;  4OC3 A;  3RBU A;  4NGM A;  4OC0 A;  1DE4 C;  3SJE A;  3D7H A;  3S9L A;  4C9E A;  2PVW A;  2C6G A;  2PVV A;  4OC4 A;  4C8F A;  4C8C A;  1V6C A;  4CDJ A;  3D7F A;  4MCP A;  4NGN A;  2OOT A;  4OME A;  3KAS A;  1WVM A;  4MCR A;  4OC2 A;  4C9R A;  5F09 A;  4C9V A;  4TJV A;  4P4E A;  4C85 A;  2C5Q A;  4CDK A;  4YN3 A;  2EK9 A;  2JBJ A;  4X3R A;  4P4F A;  4W9Y A;  4C84 A;  2XEJ A;  2CIJ A;  4NGS A;  3BI1 A;  3FF3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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