4TKDA

Sulfolobus solfataricus hjc mutants
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
127
structure length
120
Chain Sequence
SAVERNIVSRLRDKGFAVVRAPDPIPDIIALKNGVIILIEMKSRKDGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLKFIPFEKLRRTETGNYVADSEIEGLDLEDLVRLVEAKISR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Holliday junction resolvase Hjc
publication title Crystal Unengineering: Reducing the Crystallisability of Sulfolobus solfataricus Hjc
doi rcsb
source organism Sulfolobus solfataricus
total genus 37
structure length 120
sequence length 127
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4tkdA00
2GW6A 1ZP7A 3AJVB 2WIWA 2CV8A 3DNXA 1A79A 2ZYZA 2INBA 4QBOA 4QBNA 2WCWA 1OB9A 3P1ZA 1GEFA 2VLDA 2WIZA 1RZNA 4TKDA 3P1YA 3AJVA 2EO0A 3IEYA 4QBLA 4TKKA 1Y1OA 5FDKA 1Y88A 1F1ZA 1XMXA 2OSTA 2ZYZB 2FCOA 1T0FA 1R0VA 2GJWA 1HH1A 1R11A 3FOVA 1OB8A 3P1ZB 1RLVA 2WJ0A 2OKFA 2WCZA 1IPIA
chains in the Genus database with same CATH superfamily
2GW6A 1ZP7A 2FLCA 3AJVB 3IEYB 2WIWA 4DAPA 2VS1A 2CV8A 4G6UA 3DNXA 1A79A 2ZYZA 2INBA 4E6ZA 4QBOA 4QBNA 2WCWA 1OB9A 4LQEA 3P1ZA 4ZQUA 4DAVA 1UWVA 1GEFA 2VLDA 2WIZA 4G6VA 2JJQA 2Z0RA 1RZNA 4TKDA 2FL3A 3P1YA 3IF0X 4EV1A 3AJVA 1YNMA 2EO0A 3BT7A 2DBSA 3IEYA 4QBLA 4TKKA 1Y1OA 5FDKA 1Y88A 1F1ZA 2IXSA 1XMXA 2W8MA 4DA2A 2FKHB 2OSTA 2CZRA 2ZYZB 2FCOA 1T0FA 2FKCA 1R0VA 2GJWA 1HH1A 1R11A 3FOVA 1OB8A 3P1ZB 1RLVA 2WJ0A 2BH2A 2OKFA 2WCZA 1IPIA
chains in the Genus database with same CATH topology
2GW6A 1ZP7A 2FLCA 3AJVB 3IEYB 2WIWA 4DAPA 2VS1A 2CV8A 4G6UA 3DNXA 1A79A 2ZYZA 2INBA 4E6ZA 4QBOA 4QBNA 2WCWA 1OB9A 4LQEA 3P1ZA 4ZQUA 4DAVA 1UWVA 1GEFA 2VLDA 2WIZA 4G6VA 2JJQA 2Z0RA 1RZNA 4TKDA 2FL3A 3P1YA 3IF0X 4EV1A 3AJVA 1YNMA 2EO0A 3BT7A 2DBSA 3IEYA 4QBLA 4TKKA 1Y1OA 5FDKA 1Y88A 1F1ZA 2IXSA 1XMXA 2W8MA 4DA2A 2FKHB 2OSTA 2CZRA 2ZYZB 2FCOA 1T0FA 2FKCA 1R0VA 2GJWA 1HH1A 1R11A 3FOVA 1OB8A 3P1ZB 1RLVA 2WJ0A 2BH2A 2OKFA 2WCZA 1IPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GW6 A;  1ZP7 A;  3AJV B;  2WIW A;  2CV8 A;  3DNX A;  1A79 A;  2ZYZ A;  2INB A;  4QBO A;  4QBN A;  2WCW A;  1OB9 A;  3P1Z A;  1GEF A;  2VLD A;  2WIZ A;  1RZN A;  4TKD A;  3P1Y A;  3AJV A;  2EO0 A;  3IEY A;  4QBL A;  4TKK A;  1Y1O A;  5FDK A;  1Y88 A;  1F1Z A;  1XMX A;  2OST A;  2ZYZ B;  2FCO A;  1T0F A;  1R0V A;  2GJW A;  1HH1 A;  1R11 A;  3FOV A;  1OB8 A;  3P1Z B;  1RLV A;  2WJ0 A;  2OKF A;  2WCZ A;  1IPI A; 
#chains in the Genus database with same CATH topology
 2GW6 A;  1ZP7 A;  2FLC A;  3AJV B;  3IEY B;  2WIW A;  4DAP A;  2VS1 A;  2CV8 A;  4G6U A;  3DNX A;  1A79 A;  2ZYZ A;  2INB A;  4E6Z A;  4QBO A;  4QBN A;  2WCW A;  1OB9 A;  4LQE A;  3P1Z A;  4ZQU A;  4DAV A;  1UWV A;  1GEF A;  2VLD A;  2WIZ A;  4G6V A;  2JJQ A;  2Z0R A;  1RZN A;  4TKD A;  2FL3 A;  3P1Y A;  3IF0 X;  4EV1 A;  3AJV A;  1YNM A;  2EO0 A;  3BT7 A;  2DBS A;  3IEY A;  4QBL A;  4TKK A;  1Y1O A;  5FDK A;  1Y88 A;  1F1Z A;  2IXS A;  1XMX A;  2W8M A;  4DA2 A;  2FKH B;  2OST A;  2CZR A;  2ZYZ B;  2FCO A;  1T0F A;  2FKC A;  1R0V A;  2GJW A;  1HH1 A;  1R11 A;  3FOV A;  1OB8 A;  3P1Z B;  1RLV A;  2WJ0 A;  2BH2 A;  2OKF A;  2WCZ A;  1IPI A; 
#chains in the Genus database with same CATH homology
 2GW6 A;  1ZP7 A;  2FLC A;  3AJV B;  3IEY B;  2WIW A;  4DAP A;  2VS1 A;  2CV8 A;  4G6U A;  3DNX A;  1A79 A;  2ZYZ A;  2INB A;  4E6Z A;  4QBO A;  4QBN A;  2WCW A;  1OB9 A;  4LQE A;  3P1Z A;  4ZQU A;  4DAV A;  1UWV A;  1GEF A;  2VLD A;  2WIZ A;  4G6V A;  2JJQ A;  2Z0R A;  1RZN A;  4TKD A;  2FL3 A;  3P1Y A;  3IF0 X;  4EV1 A;  3AJV A;  1YNM A;  2EO0 A;  3BT7 A;  2DBS A;  3IEY A;  4QBL A;  4TKK A;  1Y1O A;  5FDK A;  1Y88 A;  1F1Z A;  2IXS A;  1XMX A;  2W8M A;  4DA2 A;  2FKH B;  2OST A;  2CZR A;  2ZYZ B;  2FCO A;  1T0F A;  2FKC A;  1R0V A;  2GJW A;  1HH1 A;  1R11 A;  3FOV A;  1OB8 A;  3P1Z B;  1RLV A;  2WJ0 A;  2BH2 A;  2OKF A;  2WCZ A;  1IPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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