4TKDA

Sulfolobus solfataricus hjc mutants
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
127
structure length
120
Chain Sequence
SAVERNIVSRLRDKGFAVVRAPDPIPDIIALKNGVIILIEMKSRKDGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLKFIPFEKLRRTETGNYVADSEIEGLDLEDLVRLVEAKISR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Holliday junction resolvase Hjc
publication title Crystal Unengineering: Reducing the Crystallisability of Sulfolobus solfataricus Hjc
doi rcsb
source organism Sulfolobus solfataricus
total genus 37
structure length 120
sequence length 127
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4tkdA00
2ZYZB 4TKDA 2INBA 5FDKA 1R11A 1Y1OA 3P1YA 1HH1A 1OB9A 1RLVA 1T0FA 2CV8A 2WCZA 4TKKA 2WJ0A 2WCWA 4QBNA 1XMXA 2ZYZA 2OSTA 2GJWA 2FCOA 1OB8A 1A79A 2GW6A 2OKFA 1GEFA 3FOVA 3IEYA 4QBLA 2WIWA 2VLDA 3P1ZB 3AJVB 4QBOA 1ZP7A 1F1ZA 3DNXA 1Y88A 1R0VA 1RZNA 3P1ZA 2WIZA 3AJVA 1IPIA 2EO0A
chains in the Genus database with same CATH superfamily
2ZYZB 4TKDA 2VS1A 2INBA 3BT7A 5FDKA 1YNMA 1R11A 4G6UA 1Y1OA 3P1YA 2IXSA 4LQEA 1HH1A 1OB9A 1RLVA 1T0FA 2CV8A 2WCZA 3IEYB 4TKKA 2WCWA 4EV1A 2WJ0A 4QBNA 1XMXA 2ZYZA 2OSTA 2GJWA 2FCOA 1OB8A 1A79A 2GW6A 2OKFA 1GEFA 3IF0X 1UWVA 3FOVA 3IEYA 4QBLA 2WIWA 2VLDA 3P1ZB 3AJVB 2CZRA 4QBOA 2BH2A 2FKCA 1ZP7A 2FKHB 2FL3A 4DAVA 1F1ZA 2DBSA 4E6ZA 3DNXA 1Y88A 1R0VA 1RZNA 2JJQA 3P1ZA 4ZQUA 2WIZA 4G6VA 2W8MA 2Z0RA 3AJVA 4DAPA 4DA2A 2FLCA 1IPIA 2EO0A
chains in the Genus database with same CATH topology
2ZYZB 4TKDA 2VS1A 2INBA 3BT7A 5FDKA 1YNMA 1R11A 4G6UA 1Y1OA 3P1YA 2IXSA 4LQEA 1HH1A 1OB9A 1RLVA 1T0FA 2CV8A 2WCZA 3IEYB 4TKKA 2WCWA 4EV1A 2WJ0A 4QBNA 1XMXA 2ZYZA 2OSTA 2GJWA 2FCOA 1OB8A 1A79A 2GW6A 2OKFA 1GEFA 3IF0X 1UWVA 3FOVA 3IEYA 4QBLA 2WIWA 2VLDA 3P1ZB 3AJVB 2CZRA 4QBOA 2BH2A 2FKCA 1ZP7A 2FKHB 2FL3A 4DAVA 1F1ZA 2DBSA 4E6ZA 3DNXA 1Y88A 1R0VA 1RZNA 2JJQA 3P1ZA 4ZQUA 2WIZA 4G6VA 2W8MA 2Z0RA 3AJVA 4DAPA 4DA2A 2FLCA 1IPIA 2EO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZYZ B;  4TKD A;  2INB A;  5FDK A;  1R11 A;  1Y1O A;  3P1Y A;  1HH1 A;  1OB9 A;  1RLV A;  1T0F A;  2CV8 A;  2WCZ A;  4TKK A;  2WJ0 A;  2WCW A;  4QBN A;  1XMX A;  2ZYZ A;  2OST A;  2GJW A;  2FCO A;  1OB8 A;  1A79 A;  2GW6 A;  2OKF A;  1GEF A;  3FOV A;  3IEY A;  4QBL A;  2WIW A;  2VLD A;  3P1Z B;  3AJV B;  4QBO A;  1ZP7 A;  1F1Z A;  3DNX A;  1Y88 A;  1R0V A;  1RZN A;  3P1Z A;  2WIZ A;  3AJV A;  1IPI A;  2EO0 A; 
#chains in the Genus database with same CATH topology
 2ZYZ B;  4TKD A;  2VS1 A;  2INB A;  3BT7 A;  5FDK A;  1YNM A;  1R11 A;  4G6U A;  1Y1O A;  3P1Y A;  2IXS A;  4LQE A;  1HH1 A;  1OB9 A;  1RLV A;  1T0F A;  2CV8 A;  2WCZ A;  3IEY B;  4TKK A;  2WCW A;  4EV1 A;  2WJ0 A;  4QBN A;  1XMX A;  2ZYZ A;  2OST A;  2GJW A;  2FCO A;  1OB8 A;  1A79 A;  2GW6 A;  2OKF A;  1GEF A;  3IF0 X;  1UWV A;  3FOV A;  3IEY A;  4QBL A;  2WIW A;  2VLD A;  3P1Z B;  3AJV B;  2CZR A;  4QBO A;  2BH2 A;  2FKC A;  1ZP7 A;  2FKH B;  2FL3 A;  4DAV A;  1F1Z A;  2DBS A;  4E6Z A;  3DNX A;  1Y88 A;  1R0V A;  1RZN A;  2JJQ A;  3P1Z A;  4ZQU A;  2WIZ A;  4G6V A;  2W8M A;  2Z0R A;  3AJV A;  4DAP A;  4DA2 A;  2FLC A;  1IPI A;  2EO0 A; 
#chains in the Genus database with same CATH homology
 2ZYZ B;  4TKD A;  2VS1 A;  2INB A;  3BT7 A;  5FDK A;  1YNM A;  1R11 A;  4G6U A;  1Y1O A;  3P1Y A;  2IXS A;  4LQE A;  1HH1 A;  1OB9 A;  1RLV A;  1T0F A;  2CV8 A;  2WCZ A;  3IEY B;  4TKK A;  2WCW A;  4EV1 A;  2WJ0 A;  4QBN A;  1XMX A;  2ZYZ A;  2OST A;  2GJW A;  2FCO A;  1OB8 A;  1A79 A;  2GW6 A;  2OKF A;  1GEF A;  3IF0 X;  1UWV A;  3FOV A;  3IEY A;  4QBL A;  2WIW A;  2VLD A;  3P1Z B;  3AJV B;  2CZR A;  4QBO A;  2BH2 A;  2FKC A;  1ZP7 A;  2FKH B;  2FL3 A;  4DAV A;  1F1Z A;  2DBS A;  4E6Z A;  3DNX A;  1Y88 A;  1R0V A;  1RZN A;  2JJQ A;  3P1Z A;  4ZQU A;  2WIZ A;  4G6V A;  2W8M A;  2Z0R A;  3AJV A;  4DAP A;  4DA2 A;  2FLC A;  1IPI A;  2EO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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