4TKKA

Sulfolobus solfataricus hjc mutants
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
132
structure length
127
Chain Sequence
SAVERNIVSRLRDKGFAVVRAPAKDPIPDIIALKNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLKFIPFEKLRRTETGNYVADSEIEGLDLEDLVRLVEAKISRTLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Holliday junction resolvase Hjc
publication title Crystal Unengineering: Reducing the Crystallisability of Sulfolobus solfataricus Hjc
doi rcsb
source organism Sulfolobus solfataricus
total genus 34
structure length 127
sequence length 132
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2014-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4tkkA00
2WCWA 2GW6A 1F1ZA 1OB9A 1R11A 1GEFA 2WCZA 3FOVA 4QBOA 1IPIA 1Y88A 1T0FA 2WIWA 2CV8A 2OKFA 2WJ0A 4QBNA 3P1ZB 1XMXA 2WIZA 4TKDA 3P1ZA 1HH1A 3P1YA 2EO0A 1ZP7A 2OSTA 2ZYZB 1RZNA 2INBA 2ZYZA 4QBLA 2GJWA 1Y1OA 4TKKA 5FDKA 3IEYA 1A79A 3AJVB 1OB8A 3AJVA 1RLVA 3DNXA 2FCOA 2VLDA 1R0VA
chains in the Genus database with same CATH superfamily
2WCWA 4G6UA 2GW6A 2IXSA 2Z0RA 2W8MA 1F1ZA 1OB9A 1R11A 1GEFA 2JJQA 2WCZA 3FOVA 1IPIA 1Y88A 1T0FA 4QBOA 4DA2A 2WIWA 2BH2A 2CV8A 4DAVA 2OKFA 2WJ0A 3IF0X 3P1ZB 4QBNA 1XMXA 2WIZA 4TKDA 3P1ZA 1HH1A 3P1YA 2EO0A 1ZP7A 2OSTA 2ZYZB 2DBSA 1UWVA 1RZNA 4EV1A 2FL3A 2INBA 2FLCA 4LQEA 2ZYZA 3BT7A 2CZRA 4QBLA 4ZQUA 2GJWA 1Y1OA 4G6VA 4TKKA 2FKHB 3IEYB 4E6ZA 5FDKA 3IEYA 1A79A 1YNMA 2FKCA 3AJVB 4DAPA 2VS1A 1OB8A 3AJVA 1RLVA 3DNXA 2FCOA 2VLDA 1R0VA
chains in the Genus database with same CATH topology
2WCWA 4G6UA 2GW6A 2IXSA 2Z0RA 2W8MA 1F1ZA 1OB9A 1R11A 1GEFA 2JJQA 2WCZA 3FOVA 1IPIA 1Y88A 1T0FA 4QBOA 4DA2A 2WIWA 2BH2A 2CV8A 4DAVA 2OKFA 2WJ0A 3IF0X 3P1ZB 4QBNA 1XMXA 2WIZA 4TKDA 3P1ZA 1HH1A 3P1YA 2EO0A 1ZP7A 2OSTA 2ZYZB 2DBSA 1UWVA 1RZNA 4EV1A 2FL3A 2INBA 2FLCA 4LQEA 2ZYZA 3BT7A 2CZRA 4QBLA 4ZQUA 2GJWA 1Y1OA 4G6VA 4TKKA 2FKHB 3IEYB 4E6ZA 5FDKA 3IEYA 1A79A 1YNMA 2FKCA 3AJVB 4DAPA 2VS1A 1OB8A 3AJVA 1RLVA 3DNXA 2FCOA 2VLDA 1R0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WCW A;  2GW6 A;  1F1Z A;  1OB9 A;  1R11 A;  1GEF A;  2WCZ A;  3FOV A;  4QBO A;  1IPI A;  1Y88 A;  1T0F A;  2WIW A;  2CV8 A;  2OKF A;  2WJ0 A;  4QBN A;  3P1Z B;  1XMX A;  2WIZ A;  4TKD A;  3P1Z A;  1HH1 A;  3P1Y A;  2EO0 A;  1ZP7 A;  2OST A;  2ZYZ B;  1RZN A;  2INB A;  2ZYZ A;  4QBL A;  2GJW A;  1Y1O A;  4TKK A;  5FDK A;  3IEY A;  1A79 A;  3AJV B;  1OB8 A;  3AJV A;  1RLV A;  3DNX A;  2FCO A;  2VLD A;  1R0V A; 
#chains in the Genus database with same CATH topology
 2WCW A;  4G6U A;  2GW6 A;  2IXS A;  2Z0R A;  2W8M A;  1F1Z A;  1OB9 A;  1R11 A;  1GEF A;  2JJQ A;  2WCZ A;  3FOV A;  1IPI A;  1Y88 A;  1T0F A;  4QBO A;  4DA2 A;  2WIW A;  2BH2 A;  2CV8 A;  4DAV A;  2OKF A;  2WJ0 A;  3IF0 X;  3P1Z B;  4QBN A;  1XMX A;  2WIZ A;  4TKD A;  3P1Z A;  1HH1 A;  3P1Y A;  2EO0 A;  1ZP7 A;  2OST A;  2ZYZ B;  2DBS A;  1UWV A;  1RZN A;  4EV1 A;  2FL3 A;  2INB A;  2FLC A;  4LQE A;  2ZYZ A;  3BT7 A;  2CZR A;  4QBL A;  4ZQU A;  2GJW A;  1Y1O A;  4G6V A;  4TKK A;  2FKH B;  3IEY B;  4E6Z A;  5FDK A;  3IEY A;  1A79 A;  1YNM A;  2FKC A;  3AJV B;  4DAP A;  2VS1 A;  1OB8 A;  3AJV A;  1RLV A;  3DNX A;  2FCO A;  2VLD A;  1R0V A; 
#chains in the Genus database with same CATH homology
 2WCW A;  4G6U A;  2GW6 A;  2IXS A;  2Z0R A;  2W8M A;  1F1Z A;  1OB9 A;  1R11 A;  1GEF A;  2JJQ A;  2WCZ A;  3FOV A;  1IPI A;  1Y88 A;  1T0F A;  4QBO A;  4DA2 A;  2WIW A;  2BH2 A;  2CV8 A;  4DAV A;  2OKF A;  2WJ0 A;  3IF0 X;  3P1Z B;  4QBN A;  1XMX A;  2WIZ A;  4TKD A;  3P1Z A;  1HH1 A;  3P1Y A;  2EO0 A;  1ZP7 A;  2OST A;  2ZYZ B;  2DBS A;  1UWV A;  1RZN A;  4EV1 A;  2FL3 A;  2INB A;  2FLC A;  4LQE A;  2ZYZ A;  3BT7 A;  2CZR A;  4QBL A;  4ZQU A;  2GJW A;  1Y1O A;  4G6V A;  4TKK A;  2FKH B;  3IEY B;  4E6Z A;  5FDK A;  3IEY A;  1A79 A;  1YNM A;  2FKC A;  3AJV B;  4DAP A;  2VS1 A;  1OB8 A;  3AJV A;  1RLV A;  3DNX A;  2FCO A;  2VLD A;  1R0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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