4TO0A

Structure basis of cellular dntp regulation, samhd1-gtp-datp-dctp complex
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
486
structure length
479
Chain Sequence
TMKVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCRNLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
publication title Structural basis of cellular dNTP regulation by SAMHD1.
pubmed doi rcsb
source organism Homo sapiens
total genus 171
structure length 479
sequence length 486
chains with identical sequence B, C, D
ec nomenclature ec 3.1.5.-:
pdb deposition date 2014-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4to0A01
3NR1A 4QFXA 4ZWEA 5AO2A 4L1JB 3NQWA 4Q7HA 2DQBA 3HC1A 4QFYA 1U6ZA 3HI0A 3TMDA 4TNZA 4X9EA 3LJXA 3CCGA 4MZ7A 4QG4A 2PAQA 4TNQA 4TNYA 4XDSA 5AO3A 2O08A 3TMCA 4RXSA 1XX7A 3IRHA 3MZOA 4TO0A 4QG0A 4MLMA 4TO2A 4TO3A 5TK7A 4MDZA 4L1JA 4RXPA 4TO6A 1YNBA 4LRLA 4TNPA 1YOYA 2PQ7A 4TO4A 3I7AA 5TK8A 2PGSA 3M1TA 5TKAA 3TM8A 2CQZA 3MEMA 3U1NA 3KH1A 4DMBA 4RXOA 3P3QA 5AO1A 4BZBA 4TNRA 5AO4A 2PARA 2GZ4A 4QG1A 4ZWGA 2Q14A 4TNXA 2HEKA 2OGIA 1VQRA 5TK9A 4ME4A 2FLOA 4L7EA 4MLNA 4TO1A 4N6WA 4MCWA 4BZCA 4QFZA 4TO5A 4RXRA 4QG2A 1VJ7A 3RF0A 3TMBA 5AO0A 2O6IA 2PAUA 4N71A 5TK6A 4R8ZA 4RXQA 4L7WA 3BG2A
chains in the Genus database with same CATH superfamily
3NR1A 4QFXA 4ZWEA 5AO2A 4L1JB 3NQWA 4Q7HA 3KQ5A 4Q2CA 2DQBA 3S4LA 3HC1A 4QFYA 1U6ZA 3HI0A 4QQYA 3TMDA 4TNZA 4X9EA 3LJXA 3CCGA 4MZ7A 4QG4A 4QQZA 2PAQA 4TNQA 4TNYA 4XDSA 5AO3A 2O08A 3TMCA 3SKDA 4RXSA 1XX7A 3IRHA 3MZOA 4TO0A 4QG0A 4MLMA 4TO2A 4TO3A 5TK7A 4MDZA 4L1JA 4RXPA 4TO6A 1YNBA 4LRLA 4TNPA 1YOYA 3SK9A 2PQ7A 4TO4A 3I7AA 5TK8A 2PGSA 3M1TA 5TKAA 3TM8A 2CQZA 3MEMA 3U1NA 4QQWA 3KH1A 4DMBA 4QQXA 4RXOA 3P3QA 5AO1A 4BZBA 4TNRA 5AO4A 2PARA 2GZ4A 4QG1A 4ZWGA 2Q14A 4TNXA 2HEKA 2OGIA 1VQRA 5TK9A 4ME4A 2FLOA 4L7EA 4MLNA 4TO1A 4N6WA 4MCWA 4BZCA 4QFZA 4TO5A 4RXRA 4QG2A 1VJ7A 3GW7A 3RF0A 3TMBA 5AO0A 2O6IA 2PAUA 4N71A 5TK6A 4R8ZA 4RXQA 4L7WA 3BG2A 4Q2DA
chains in the Genus database with same CATH topology
3NR1A 4QFXA 4ZWEA 5AO2A 4L1JB 3NQWA 4Q7HA 3KQ5A 4Q2CA 2DQBA 3S4LA 3HC1A 4QFYA 1U6ZA 3HI0A 4QQYA 3TMDA 4TNZA 4X9EA 3LJXA 3CCGA 4MZ7A 4QG4A 4QQZA 2PAQA 4TNQA 4TNYA 4XDSA 5AO3A 2O08A 3TMCA 3SKDA 4RXSA 1XX7A 3IRHA 3MZOA 4TO0A 4QG0A 4MLMA 4TO2A 4TO3A 5TK7A 4MDZA 4L1JA 4RXPA 4TO6A 1YNBA 4LRLA 4TNPA 1YOYA 3SK9A 2PQ7A 4TO4A 3I7AA 5TK8A 2PGSA 3M1TA 5TKAA 3TM8A 2CQZA 3MEMA 3U1NA 4QQWA 3KH1A 4DMBA 4QQXA 4RXOA 3P3QA 5AO1A 4BZBA 4TNRA 5AO4A 2PARA 2GZ4A 4QG1A 4ZWGA 2Q14A 4TNXA 2HEKA 2OGIA 1VQRA 5TK9A 4ME4A 2FLOA 4L7EA 4MLNA 4TO1A 4N6WA 4MCWA 4BZCA 4QFZA 4TO5A 4RXRA 4QG2A 1VJ7A 3GW7A 3RF0A 3TMBA 5AO0A 2O6IA 2PAUA 4N71A 5TK6A 4R8ZA 4RXQA 4L7WA 3BG2A 4Q2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NR1 A;  4QFX A;  4ZWE A;  5AO2 A;  4L1J B;  3NQW A;  4Q7H A;  2DQB A;  3HC1 A;  4QFY A;  1U6Z A;  3HI0 A;  3TMD A;  4TNZ A;  4X9E A;  3LJX A;  3CCG A;  4MZ7 A;  4QG4 A;  2PAQ A;  4TNQ A;  4TNY A;  4XDS A;  5AO3 A;  2O08 A;  3TMC A;  4RXS A;  1XX7 A;  3IRH A;  3MZO A;  4TO0 A;  4QG0 A;  4MLM A;  4TO2 A;  4TO3 A;  5TK7 A;  4MDZ A;  4L1J A;  4RXP A;  4TO6 A;  1YNB A;  4LRL A;  4TNP A;  1YOY A;  2PQ7 A;  4TO4 A;  3I7A A;  5TK8 A;  2PGS A;  3M1T A;  5TKA A;  3TM8 A;  2CQZ A;  3MEM A;  3U1N A;  3KH1 A;  4DMB A;  4RXO A;  3P3Q A;  5AO1 A;  4BZB A;  4TNR A;  5AO4 A;  2PAR A;  2GZ4 A;  4QG1 A;  4ZWG A;  2Q14 A;  4TNX A;  2HEK A;  2OGI A;  1VQR A;  5TK9 A;  4ME4 A;  2FLO A;  4L7E A;  4MLN A;  4TO1 A;  4N6W A;  4MCW A;  4BZC A;  4QFZ A;  4TO5 A;  4RXR A;  4QG2 A;  1VJ7 A;  3RF0 A;  3TMB A;  5AO0 A;  2O6I A;  2PAU A;  4N71 A;  5TK6 A;  4R8Z A;  4RXQ A;  4L7W A;  3BG2 A; 
#chains in the Genus database with same CATH topology
 3NR1 A;  4QFX A;  4ZWE A;  5AO2 A;  4L1J B;  3NQW A;  4Q7H A;  3KQ5 A;  4Q2C A;  2DQB A;  3S4L A;  3HC1 A;  4QFY A;  1U6Z A;  3HI0 A;  4QQY A;  3TMD A;  4TNZ A;  4X9E A;  3LJX A;  3CCG A;  4MZ7 A;  4QG4 A;  4QQZ A;  2PAQ A;  4TNQ A;  4TNY A;  4XDS A;  5AO3 A;  2O08 A;  3TMC A;  3SKD A;  4RXS A;  1XX7 A;  3IRH A;  3MZO A;  4TO0 A;  4QG0 A;  4MLM A;  4TO2 A;  4TO3 A;  5TK7 A;  4MDZ A;  4L1J A;  4RXP A;  4TO6 A;  1YNB A;  4LRL A;  4TNP A;  1YOY A;  3SK9 A;  2PQ7 A;  4TO4 A;  3I7A A;  5TK8 A;  2PGS A;  3M1T A;  5TKA A;  3TM8 A;  2CQZ A;  3MEM A;  3U1N A;  4QQW A;  3KH1 A;  4DMB A;  4QQX A;  4RXO A;  3P3Q A;  5AO1 A;  4BZB A;  4TNR A;  5AO4 A;  2PAR A;  2GZ4 A;  4QG1 A;  4ZWG A;  2Q14 A;  4TNX A;  2HEK A;  2OGI A;  1VQR A;  5TK9 A;  4ME4 A;  2FLO A;  4L7E A;  4MLN A;  4TO1 A;  4N6W A;  4MCW A;  4BZC A;  4QFZ A;  4TO5 A;  4RXR A;  4QG2 A;  1VJ7 A;  3GW7 A;  3RF0 A;  3TMB A;  5AO0 A;  2O6I A;  2PAU A;  4N71 A;  5TK6 A;  4R8Z A;  4RXQ A;  4L7W A;  3BG2 A;  4Q2D A; 
#chains in the Genus database with same CATH homology
 3NR1 A;  4QFX A;  4ZWE A;  5AO2 A;  4L1J B;  3NQW A;  4Q7H A;  3KQ5 A;  4Q2C A;  2DQB A;  3S4L A;  3HC1 A;  4QFY A;  1U6Z A;  3HI0 A;  4QQY A;  3TMD A;  4TNZ A;  4X9E A;  3LJX A;  3CCG A;  4MZ7 A;  4QG4 A;  4QQZ A;  2PAQ A;  4TNQ A;  4TNY A;  4XDS A;  5AO3 A;  2O08 A;  3TMC A;  3SKD A;  4RXS A;  1XX7 A;  3IRH A;  3MZO A;  4TO0 A;  4QG0 A;  4MLM A;  4TO2 A;  4TO3 A;  5TK7 A;  4MDZ A;  4L1J A;  4RXP A;  4TO6 A;  1YNB A;  4LRL A;  4TNP A;  1YOY A;  3SK9 A;  2PQ7 A;  4TO4 A;  3I7A A;  5TK8 A;  2PGS A;  3M1T A;  5TKA A;  3TM8 A;  2CQZ A;  3MEM A;  3U1N A;  4QQW A;  3KH1 A;  4DMB A;  4QQX A;  4RXO A;  3P3Q A;  5AO1 A;  4BZB A;  4TNR A;  5AO4 A;  2PAR A;  2GZ4 A;  4QG1 A;  4ZWG A;  2Q14 A;  4TNX A;  2HEK A;  2OGI A;  1VQR A;  5TK9 A;  4ME4 A;  2FLO A;  4L7E A;  4MLN A;  4TO1 A;  4N6W A;  4MCW A;  4BZC A;  4QFZ A;  4TO5 A;  4RXR A;  4QG2 A;  1VJ7 A;  3GW7 A;  3RF0 A;  3TMB A;  5AO0 A;  2O6I A;  2PAU A;  4N71 A;  5TK6 A;  4R8Z A;  4RXQ A;  4L7W A;  3BG2 A;  4Q2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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