4TO1A

Structure basis of cellular dntp regulation, samhd1-gtp-datp/dctp-dctp complex
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
486
structure length
479
Chain Sequence
TMKVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCRNLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
publication title Structural basis of cellular dNTP regulation by SAMHD1.
pubmed doi rcsb
source organism Homo sapiens
total genus 172
structure length 479
sequence length 486
chains with identical sequence B, C, D
ec nomenclature ec 3.1.5.-:
pdb deposition date 2014-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4to1A01
4L7EA 3TMBA 2O6IA 4RXSA 4RXRA 5TK6A 4RXOA 3P3QA 4L7WA 5TK9A 2Q14A 3MEMA 5AO1A 3RF0A 5AO2A 2HEKA 4ME4A 4MLNA 4MLMA 4R8ZA 4QG0A 4RXQA 5TKAA 4ZWGA 3LJXA 4TO6A 3CCGA 4QG4A 4BZCA 2OGIA 4TO4A 3HC1A 4TNRA 4TO1A 3M1TA 4QG2A 3BG2A 4TNPA 2PQ7A 1YOYA 3TM8A 2CQZA 3TMDA 4TO0A 3U1NA 1U6ZA 1XX7A 4TO5A 5AO0A 5AO4A 3TMCA 4QFXA 4BZBA 3I7AA 4TO3A 3KH1A 5TK7A 1YNBA 4MDZA 4QFYA 2DQBA 3MZOA 4DMBA 2GZ4A 4TO2A 1VJ7A 4TNQA 4N6WA 2PARA 4RXPA 2O08A 4L1JB 4XDSA 4QG1A 4MCWA 4TNYA 2PGSA 5TK8A 2PAUA 4X9EA 4ZWEA 5AO3A 3NR1A 4TNXA 3HI0A 1VQRA 3IRHA 4LRLA 2FLOA 4MZ7A 4L1JA 4Q7HA 2PAQA 4QFZA 3NQWA 4N71A 4TNZA
chains in the Genus database with same CATH superfamily
4L7EA 3TMBA 2O6IA 4Q2DA 4RXSA 4RXRA 5TK6A 4RXOA 3P3QA 4L7WA 5TK9A 2Q14A 3MEMA 4Q2CA 5AO1A 3RF0A 5AO2A 2HEKA 4ME4A 3KQ5A 4MLNA 4MLMA 4R8ZA 4QG0A 4RXQA 5TKAA 3SKDA 4ZWGA 4QQZA 3LJXA 4TO6A 3CCGA 4QG4A 4BZCA 2OGIA 4TO4A 3HC1A 4TNRA 4TO1A 3M1TA 4QG2A 3BG2A 4TNPA 2PQ7A 1YOYA 3TM8A 2CQZA 3TMDA 4TO0A 3U1NA 1U6ZA 1XX7A 4TO5A 5AO0A 5AO4A 3TMCA 4QQXA 4QFXA 4BZBA 3GW7A 3I7AA 4TO3A 3KH1A 5TK7A 1YNBA 4MDZA 4QFYA 2DQBA 3MZOA 4DMBA 2GZ4A 4TO2A 1VJ7A 4TNQA 4N6WA 2PARA 4RXPA 2O08A 4L1JB 4XDSA 4QQYA 4QG1A 4MCWA 4TNYA 2PGSA 5TK8A 2PAUA 4X9EA 4ZWEA 5AO3A 3NR1A 4TNXA 3S4LA 3HI0A 1VQRA 3IRHA 4LRLA 4QQWA 3SK9A 2FLOA 4MZ7A 4L1JA 4Q7HA 2PAQA 4QFZA 3NQWA 4N71A 4TNZA
chains in the Genus database with same CATH topology
4L7EA 3TMBA 2O6IA 4Q2DA 4RXSA 4RXRA 5TK6A 4RXOA 3P3QA 4L7WA 5TK9A 2Q14A 3MEMA 4Q2CA 5AO1A 3RF0A 5AO2A 2HEKA 4ME4A 3KQ5A 4MLNA 4MLMA 4R8ZA 4QG0A 4RXQA 5TKAA 3SKDA 4ZWGA 4QQZA 3LJXA 4TO6A 3CCGA 4QG4A 4BZCA 2OGIA 4TO4A 3HC1A 4TNRA 4TO1A 3M1TA 4QG2A 3BG2A 4TNPA 2PQ7A 1YOYA 3TM8A 2CQZA 3TMDA 4TO0A 3U1NA 1U6ZA 1XX7A 4TO5A 5AO0A 5AO4A 3TMCA 4QQXA 4QFXA 4BZBA 3GW7A 3I7AA 4TO3A 3KH1A 5TK7A 1YNBA 4MDZA 4QFYA 2DQBA 3MZOA 4DMBA 2GZ4A 4TO2A 1VJ7A 4TNQA 4N6WA 2PARA 4RXPA 2O08A 4L1JB 4XDSA 4QQYA 4QG1A 4MCWA 4TNYA 2PGSA 5TK8A 2PAUA 4X9EA 4ZWEA 5AO3A 3NR1A 4TNXA 3S4LA 3HI0A 1VQRA 3IRHA 4LRLA 4QQWA 3SK9A 2FLOA 4MZ7A 4L1JA 4Q7HA 2PAQA 4QFZA 3NQWA 4N71A 4TNZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L7E A;  3TMB A;  2O6I A;  4RXS A;  4RXR A;  5TK6 A;  4RXO A;  3P3Q A;  4L7W A;  5TK9 A;  2Q14 A;  3MEM A;  5AO1 A;  3RF0 A;  5AO2 A;  2HEK A;  4ME4 A;  4MLN A;  4MLM A;  4R8Z A;  4QG0 A;  4RXQ A;  5TKA A;  4ZWG A;  3LJX A;  4TO6 A;  3CCG A;  4QG4 A;  4BZC A;  2OGI A;  4TO4 A;  3HC1 A;  4TNR A;  4TO1 A;  3M1T A;  4QG2 A;  3BG2 A;  4TNP A;  2PQ7 A;  1YOY A;  3TM8 A;  2CQZ A;  3TMD A;  4TO0 A;  3U1N A;  1U6Z A;  1XX7 A;  4TO5 A;  5AO0 A;  5AO4 A;  3TMC A;  4QFX A;  4BZB A;  3I7A A;  4TO3 A;  3KH1 A;  5TK7 A;  1YNB A;  4MDZ A;  4QFY A;  2DQB A;  3MZO A;  4DMB A;  2GZ4 A;  4TO2 A;  1VJ7 A;  4TNQ A;  4N6W A;  2PAR A;  4RXP A;  2O08 A;  4L1J B;  4XDS A;  4QG1 A;  4MCW A;  4TNY A;  2PGS A;  5TK8 A;  2PAU A;  4X9E A;  4ZWE A;  5AO3 A;  3NR1 A;  4TNX A;  3HI0 A;  1VQR A;  3IRH A;  4LRL A;  2FLO A;  4MZ7 A;  4L1J A;  4Q7H A;  2PAQ A;  4QFZ A;  3NQW A;  4N71 A;  4TNZ A; 
#chains in the Genus database with same CATH topology
 4L7E A;  3TMB A;  2O6I A;  4Q2D A;  4RXS A;  4RXR A;  5TK6 A;  4RXO A;  3P3Q A;  4L7W A;  5TK9 A;  2Q14 A;  3MEM A;  4Q2C A;  5AO1 A;  3RF0 A;  5AO2 A;  2HEK A;  4ME4 A;  3KQ5 A;  4MLN A;  4MLM A;  4R8Z A;  4QG0 A;  4RXQ A;  5TKA A;  3SKD A;  4ZWG A;  4QQZ A;  3LJX A;  4TO6 A;  3CCG A;  4QG4 A;  4BZC A;  2OGI A;  4TO4 A;  3HC1 A;  4TNR A;  4TO1 A;  3M1T A;  4QG2 A;  3BG2 A;  4TNP A;  2PQ7 A;  1YOY A;  3TM8 A;  2CQZ A;  3TMD A;  4TO0 A;  3U1N A;  1U6Z A;  1XX7 A;  4TO5 A;  5AO0 A;  5AO4 A;  3TMC A;  4QQX A;  4QFX A;  4BZB A;  3GW7 A;  3I7A A;  4TO3 A;  3KH1 A;  5TK7 A;  1YNB A;  4MDZ A;  4QFY A;  2DQB A;  3MZO A;  4DMB A;  2GZ4 A;  4TO2 A;  1VJ7 A;  4TNQ A;  4N6W A;  2PAR A;  4RXP A;  2O08 A;  4L1J B;  4XDS A;  4QQY A;  4QG1 A;  4MCW A;  4TNY A;  2PGS A;  5TK8 A;  2PAU A;  4X9E A;  4ZWE A;  5AO3 A;  3NR1 A;  4TNX A;  3S4L A;  3HI0 A;  1VQR A;  3IRH A;  4LRL A;  4QQW A;  3SK9 A;  2FLO A;  4MZ7 A;  4L1J A;  4Q7H A;  2PAQ A;  4QFZ A;  3NQW A;  4N71 A;  4TNZ A; 
#chains in the Genus database with same CATH homology
 4L7E A;  3TMB A;  2O6I A;  4Q2D A;  4RXS A;  4RXR A;  5TK6 A;  4RXO A;  3P3Q A;  4L7W A;  5TK9 A;  2Q14 A;  3MEM A;  4Q2C A;  5AO1 A;  3RF0 A;  5AO2 A;  2HEK A;  4ME4 A;  3KQ5 A;  4MLN A;  4MLM A;  4R8Z A;  4QG0 A;  4RXQ A;  5TKA A;  3SKD A;  4ZWG A;  4QQZ A;  3LJX A;  4TO6 A;  3CCG A;  4QG4 A;  4BZC A;  2OGI A;  4TO4 A;  3HC1 A;  4TNR A;  4TO1 A;  3M1T A;  4QG2 A;  3BG2 A;  4TNP A;  2PQ7 A;  1YOY A;  3TM8 A;  2CQZ A;  3TMD A;  4TO0 A;  3U1N A;  1U6Z A;  1XX7 A;  4TO5 A;  5AO0 A;  5AO4 A;  3TMC A;  4QQX A;  4QFX A;  4BZB A;  3GW7 A;  3I7A A;  4TO3 A;  3KH1 A;  5TK7 A;  1YNB A;  4MDZ A;  4QFY A;  2DQB A;  3MZO A;  4DMB A;  2GZ4 A;  4TO2 A;  1VJ7 A;  4TNQ A;  4N6W A;  2PAR A;  4RXP A;  2O08 A;  4L1J B;  4XDS A;  4QQY A;  4QG1 A;  4MCW A;  4TNY A;  2PGS A;  5TK8 A;  2PAU A;  4X9E A;  4ZWE A;  5AO3 A;  3NR1 A;  4TNX A;  3S4L A;  3HI0 A;  1VQR A;  3IRH A;  4LRL A;  4QQW A;  3SK9 A;  2FLO A;  4MZ7 A;  4L1J A;  4Q7H A;  2PAQ A;  4QFZ A;  3NQW A;  4N71 A;  4TNZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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