4TPUA

Crystal structure of ferredoxin-dependent disulfide reductase from methanosarcina acetivorans
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
169
structure length
169
Chain Sequence
EVDKVYRRLNQEVEKSGYHLNPDVEFTKELVRGLLANERRYGYWSCPCRLSADNKEEDLDIICPCYYRDPDLNDYGACYCALYVSDEVIRGEKEVESIPERRPPREKREAIRAEEASRAEMMETMEFTGKLSKPVWRCKVCGYLCAMDEAPGVCPICKARKERFERFMH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Rubredoxin
publication title Structural and Biochemical Characterization of a Ferredoxin:Thioredoxin Reductase-like Enzyme from Methanosarcina acetivorans.
pubmed doi rcsb
source organism Methanosarcina acetivorans
molecule tags Electron transport
total genus 46
structure length 169
sequence length 169
ec nomenclature
pdb deposition date 2014-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02943 FeThRed_B Ferredoxin thioredoxin reductase catalytic beta chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 4tpuA02
1QCVA 5AI3A 1RDGA 2QL0A 1B13A 1B2JA 1B71A 1H7VA 1YK5A 1VCXA 3SS2A 1DX8A 4AR4A 4POFA 2PVXA 2DSXA 1T9QA 1QYBA 6RXNA 1LKPA 1NNQA 1ZRPA 3PWFA 1SMUA 1S30A 1E8JA 1RWDA 1SMMA 3RZ6A 1RYTA 3KYXA 1S2ZA 1RB9A 3KYYA 1CAAA 1IU6A 4RXNA 1R0FA 1YV1A 1IROA 2K2DA 3RZTA 1BE7A 2KN9A 1CADA 2HR5A 3PZAA 3RYGA 2PYAA 4ME3A 1JYBA 2V3BB 4K9FA 1YUXA 2PVEA 1SMWA 2KKDA 1IU5A 4POGA 2LCQA 1T9OA 1FHMA 4YWMA 1R0IA 1S24A 1BQ8A 5AI2A 2VL6A 1T9PA 1R0HA 1BRFA 1LKMA 3MPSA 1IRNA 1YUZA 2MS3A 4AR5A 8RXNA 1FHHA 1YK4A 3KYVA 1R0GA 1LKOA 1BQ9A 4YWLA 7RXNA 3A44A 1B2OA 1RDVA 2M4YA 3KYUA 4AR3A 4AR6A 1LTLA 3KYWA 4TPUA 5RXNA 2GMGA 5IY0A 1BFYA 1C09A 1DVBA 2RDVA 3QVDA 1R0JA
chains in the Genus database with same CATH superfamily
5IYBL 5GAEc 2PMZP 5C44L 2YU9L 2M4VA 5GAHc 1B2JA 2XJRA 3K35A 1YK5A 4JAEA 4A3JL 2E2HL 2PSMC 2JA6L 3B08B 3S1ML 3HKZP 1TWCL 2DSXA 2NVYL 1T9QA 4AI3A 1QYBA 6RXNA 1R9TL 5FLML 3PL5A 3PWFA 4AI2A 3P8BA 1RYTA 3HOUL 1S2ZA 2V0FA 2RFKB 1IU6A 1VZIA 4C3HL 2ERJA 1I6HL 1TWAL 2K2DA 1BE7A 4C2M1 3IU3I 2BE5D 4WFN1 2JA7L 1JYBA 5DM61 3S14L 4XXBB 2PVEA 4AHYA 4POGA 5DM71 2JI3A 4YWMA 2XJQA 3H0GL 1LKMA 1IRNA 1RYQA 2MS3A 2Y0SP 2C6BA 3H99A 2NVQL 5IP9L 2NVTL 1RDVA 2XJTA 3I4NL 2AQCA 3S1NL 1ODHA 3KYUA 4BXXL 4AI1A 3GTGL 4A3GL 1LTLA 4TPUA 2GMGA 3GTML 5JVG1 3HJYB 1PFVA 3MSUA 1C09A 4A3FL 1VZHA 2RDVA 3RZOL 1R0JA 3LPEB 1QCVA 5M5XL 2HVYC 2QL0A 1B13A 3S15L 4C3JL 2Z3QB 3SS2A 3HAXC 3LWPB 2PVXA 3JR7A 2O5JD 3QQCE 1WJVA 5EIOC 3NFPI 3M3YL 5AN9H 3GTJL 3H3VM 2C6AA 3PKJA 3H9CA 1E8JA 2XJSA 1VZGA 3RZ6A 3HJWB 3KYXA 1CAAA 3LWQB 2A68D 4RXNA 2CKAA 5GADc 1IROA 1CADA 2EY4E 4AHXA 3RYGA 2R7ZL 3GTKL 4ME3A 5M3ML 2V3BB 4K9FA 2CKCA 1TWGL 1SMWA 3H9BA 1WCML 2LCQA 1T9OA 1FHMA 1Y1VL 5AI2A 2WB1P 3J7Z1 1BRFA 3LWVB 1YUZA 4AR5A 3H97A 8RXNA 1YK4A 3HOXL 3KYVA 1R0GA 4BBRL 4AI0A 3A44A 2A6ED 2M6PA 3HOYL 5C4XL 4A3KL 2XJPA 5IYCL 4AYBP 2JI2A 3RZDL 4ZN1B 2JI1A 5IY0A 4AHZA 4QIWP 3S17L 1RDGA 2VUML 2Z3RB 1H7VA 2NVXL 2R92L 5JVH1 3GTQL 4A3IL 5IP7L 3S16L 3M4OL 5M5YL 4POFA 2A69D 1NXGA 3VPBE 4A93L 5M5WL 1NNQA 1ZRPA 1SMUA 2E2JL 2ERSA 5MLC3 1RWDA 4U671 1SMMA 3WWNB 1OWBA 1RB9A 3KYYA 3HOWL 3PO2L 2J9UB 3GTOL 1YV1A 4Y52L 3GTPL 2HR5A 3S1QL 1OWCA 4C3IL 1I3QL 4X6AL 2KKDA 2JA8L 3WWLA 3FDJA 1BQ8A 2VL6A 4A3LL 4A3CL 4Y7NL 4JAFA 5C4JL 3PKIA 2R93L 1FHHA 1QQTA 5C3EL 4BY7L 1LKOA 2AUSB 5MF6A 2M4YA 5MFPA 1NXEA 1TWHL 2JA5L 1F4LA 5MGNA 3HOZL 5MFZA 4BY1L 5GAGc 3LNLA 5FJ8L 5RXNA 3K7AL 2XJVA 4JADA 4E6YA 4ZN3B 5M3FL 4G6BA 5AI3A 2CR8A 2NYDA 5H1Sc 2PPTA 4B8CD 1B71A 4UY81 1VCXA 1PZXA 4GS7D 1DX8A 3S2DL 1K83L 3B0AB 4LHLA 1Y1WL 3P2AA 4AR4A 3J7Y1 2B63L 5EINC 2APOB 1LKPA 2ZIXA 2AYJA 2H12A 3I4ML 1S30A 3S2HL 4A3EL 1PFYA 4V196 1PFWA 1I50L 1P7PA 1R0FA 3PIP1 3RZTA 1IW7D 2KN9A 2E2IL 3PZAA 3FKIL 4LHNA 2PYAA 3LWOB 3PIO1 3HOVL 1YUXA 4JAGA 1IU5A 4XGHA 3LWRB 5K2ME 1R0IA 1S24A 4AHWA 1T9PA 2WAQP 1R0HA 4A3ML 3MPSA 1TWFL 4BBSL 4TVMA 3GTLL 4A3DL 3MQKB 1BQ9A 4YWLA 7RXNA 2L0ZA 1B2OA 1SFOL 2A6HD 4A3BL 4AR3A 4AR6A 1PFUA 3KYWA 2V0EA 3CQZL 1Z92B 1BFYA 2B5ID 2M6OA 3PO3L 5IYDL 1DVBA 3S1RL 2XJUA 3QVDA 3ZG6A
chains in the Genus database with same CATH topology
1QCVA 5GAEc 4G6BA 5AI3A 1RDGA 2CR8A 2NYDA 2QL0A 5H1Sc 1B13A 2M4VA 2PPTA 4B8CD 5GAHc 2Z3RB 1B2JA 2XJRA 1B71A 3K35A 1YK5A 1H7VA 4UY81 1VCXA 5JVH1 4GS7D 2Z3QB 3SS2A 1DX8A 4JAEA 3B0AB 4LHLA 3P2AA 2PSMC 4AR4A 3B08B 4POFA 2A69D 2PVXA 3J7Y1 1NXGA 2DSXA 2O5JD 1T9QA 3QQCE 3VPBE 4AI3A 1QYBA 5EINC 1WJVA 6RXNA 1LKPA 5EIOC 1NNQA 2ZIXA 3QVDA 2AYJA 1ZRPA 3NFPI 3PWFA 2H12A 1SMUA 5AN9H 2C6AA 3PKJA 1S30A 1E8JA 2ERSA 5MLC3 2XJSA 1RWDA 1VZGA 4U671 1SMMA 4AI2A 3P8BA 3RZ6A 3WWNB 1OWBA 1RYTA 3KYXA 1S2ZA 2V0FA 1RB9A 3KYYA 1CAAA 2J9UB 1R0JA 4V196 1IU6A 1VZIA 2A68D 4RXNA 2ERJA 1R0FA 2CKAA 1YV1A 5GADc 1IROA 2K2DA 3PIP1 3RZTA 1IW7D 1BE7A 2KN9A 2HR5A 4AHXA 3PZAA 1OWCA 3RYGA 3IU3I 4LHNA 2BE5D 4WFN1 2PYAA 4ME3A 1JYBA 3PIO1 5DM61 2V3BB 4K9FA 1YUXA 2CKCA 2PVEA 4JAGA 4XXBB 4AHYA 1SMWA 2KKDA 1IU5A 4XGHA 5DM71 4POGA 2JI3A 2LCQA 1T9OA 1FHMA 4YWMA 1R0IA 2XJQA 1S24A 1BQ8A 5AI2A 3WWLA 2VL6A 4AHWA 1T9PA 1R0HA 3J7Z1 1BRFA 1LKMA 3MPSA 4JAFA 1IRNA 1RYQA 3PKIA 1YUZA 2MS3A 4AR5A 5K2ME 4TVMA 8RXNA 1FHHA 1YK4A 3KYVA 1R0GA 2C6BA 1LKOA 1BQ9A 4YWLA 5MF6A 4AI0A 7RXNA 2L0ZA 3A44A 1B2OA 2A6ED 1RDVA 2M4YA 2M6PA 2XJTA 5MFPA 1NXEA 2A6HD 1ODHA 2XJPA 3KYUA 4AI1A 4AR3A 5MGNA 5MFZA 4AR6A 5GAGc 2JI2A 3ZG6A 3LNLA 1LTLA 3KYWA 4ZN1B 4TPUA 2V0EA 5RXNA 2JI1A 2GMGA 2XJVA 5IY0A 4JADA 5JVG1 1Z92B 4E6YA 4ZN3B 1BFYA 2B5ID 2M6OA 3MSUA 4AHZA 1C09A 1DVBA 1VZHA 2RDVA 2XJUA 1CADA 3LPEB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QCV A;  5AI3 A;  1RDG A;  2QL0 A;  1B13 A;  1B2J A;  1B71 A;  1H7V A;  1YK5 A;  1VCX A;  3SS2 A;  1DX8 A;  4AR4 A;  4POF A;  2PVX A;  2DSX A;  1T9Q A;  1QYB A;  6RXN A;  1LKP A;  1NNQ A;  1ZRP A;  3PWF A;  1SMU A;  1S30 A;  1E8J A;  1RWD A;  1SMM A;  3RZ6 A;  1RYT A;  3KYX A;  1S2Z A;  1RB9 A;  3KYY A;  1CAA A;  1IU6 A;  4RXN A;  1R0F A;  1YV1 A;  1IRO A;  2K2D A;  3RZT A;  1BE7 A;  2KN9 A;  1CAD A;  2HR5 A;  3PZA A;  3RYG A;  2PYA A;  4ME3 A;  1JYB A;  2V3B B;  4K9F A;  1YUX A;  2PVE A;  1SMW A;  2KKD A;  1IU5 A;  4POG A;  2LCQ A;  1T9O A;  1FHM A;  4YWM A;  1R0I A;  1S24 A;  1BQ8 A;  5AI2 A;  2VL6 A;  1T9P A;  1R0H A;  1BRF A;  1LKM A;  3MPS A;  1IRN A;  1YUZ A;  2MS3 A;  4AR5 A;  8RXN A;  1FHH A;  1YK4 A;  3KYV A;  1R0G A;  1LKO A;  1BQ9 A;  4YWL A;  7RXN A;  3A44 A;  1B2O A;  1RDV A;  2M4Y A;  3KYU A;  4AR3 A;  4AR6 A;  1LTL A;  3KYW A;  4TPU A;  5RXN A;  2GMG A;  5IY0 A;  1BFY A;  1C09 A;  1DVB A;  2RDV A;  3QVD A;  1R0J A; 
#chains in the Genus database with same CATH topology
 5IYB L;  5GAE c;  2PMZ P;  5C44 L;  2YU9 L;  2M4V A;  5GAH c;  1B2J A;  2XJR A;  3K35 A;  1YK5 A;  4JAE A;  4A3J L;  2E2H L;  2PSM C;  2JA6 L;  3B08 B;  3S1M L;  3HKZ P;  1TWC L;  2DSX A;  2NVY L;  1T9Q A;  4AI3 A;  1QYB A;  6RXN A;  1R9T L;  5FLM L;  3PL5 A;  3PWF A;  4AI2 A;  3P8B A;  1RYT A;  3HOU L;  1S2Z A;  2V0F A;  2RFK B;  1IU6 A;  1VZI A;  4C3H L;  2ERJ A;  1I6H L;  1TWA L;  2K2D A;  1BE7 A;  4C2M 1;  3IU3 I;  2BE5 D;  4WFN 1;  2JA7 L;  1JYB A;  5DM6 1;  3S14 L;  4XXB B;  2PVE A;  4AHY A;  4POG A;  5DM7 1;  2JI3 A;  4YWM A;  2XJQ A;  3H0G L;  1LKM A;  1IRN A;  1RYQ A;  2MS3 A;  2Y0S P;  2C6B A;  3H99 A;  2NVQ L;  5IP9 L;  2NVT L;  1RDV A;  2XJT A;  3I4N L;  2AQC A;  3S1N L;  1ODH A;  3KYU A;  4BXX L;  4AI1 A;  3GTG L;  4A3G L;  1LTL A;  4TPU A;  2GMG A;  3GTM L;  5JVG 1;  3HJY B;  1PFV A;  3MSU A;  1C09 A;  4A3F L;  1VZH A;  2RDV A;  3RZO L;  1R0J A;  3LPE B;  1QCV A;  5M5X L;  2HVY C;  2QL0 A;  1B13 A;  3S15 L;  4C3J L;  2Z3Q B;  3SS2 A;  3HAX C;  3LWP B;  2PVX A;  3JR7 A;  2O5J D;  3QQC E;  1WJV A;  5EIO C;  3NFP I;  3M3Y L;  5AN9 H;  3GTJ L;  3H3V M;  2C6A A;  3PKJ A;  3H9C A;  1E8J A;  2XJS A;  1VZG A;  3RZ6 A;  3HJW B;  3KYX A;  1CAA A;  3LWQ B;  2A68 D;  4RXN A;  2CKA A;  5GAD c;  1IRO A;  1CAD A;  2EY4 E;  4AHX A;  3RYG A;  2R7Z L;  3GTK L;  4ME3 A;  5M3M L;  2V3B B;  4K9F A;  2CKC A;  1TWG L;  1SMW A;  3H9B A;  1WCM L;  2LCQ A;  1T9O A;  1FHM A;  1Y1V L;  5AI2 A;  2WB1 P;  3J7Z 1;  1BRF A;  3LWV B;  1YUZ A;  4AR5 A;  3H97 A;  8RXN A;  1YK4 A;  3HOX L;  3KYV A;  1R0G A;  4BBR L;  4AI0 A;  3A44 A;  2A6E D;  2M6P A;  3HOY L;  5C4X L;  4A3K L;  2XJP A;  5IYC L;  4AYB P;  2JI2 A;  3RZD L;  4ZN1 B;  2JI1 A;  5IY0 A;  4AHZ A;  4QIW P;  3S17 L;  1RDG A;  2VUM L;  2Z3R B;  1H7V A;  2NVX L;  2R92 L;  5JVH 1;  3GTQ L;  4A3I L;  5IP7 L;  3S16 L;  3M4O L;  5M5Y L;  4POF A;  2A69 D;  1NXG A;  3VPB E;  4A93 L;  5M5W L;  1NNQ A;  1ZRP A;  1SMU A;  2E2J L;  2ERS A;  5MLC 3;  1RWD A;  4U67 1;  1SMM A;  3WWN B;  1OWB A;  1RB9 A;  3KYY A;  3HOW L;  3PO2 L;  2J9U B;  3GTO L;  1YV1 A;  4Y52 L;  3GTP L;  2HR5 A;  3S1Q L;  1OWC A;  4C3I L;  1I3Q L;  4X6A L;  2KKD A;  2JA8 L;  3WWL A;  3FDJ A;  1BQ8 A;  2VL6 A;  4A3L L;  4A3C L;  4Y7N L;  4JAF A;  5C4J L;  3PKI A;  2R93 L;  1FHH A;  1QQT A;  5C3E L;  4BY7 L;  1LKO A;  2AUS B;  5MF6 A;  2M4Y A;  5MFP A;  1NXE A;  1TWH L;  2JA5 L;  1F4L A;  5MGN A;  3HOZ L;  5MFZ A;  4BY1 L;  5GAG c;  3LNL A;  5FJ8 L;  5RXN A;  3K7A L;  2XJV A;  4JAD A;  4E6Y A;  4ZN3 B;  5M3F L;  4G6B A;  5AI3 A;  2CR8 A;  2NYD A;  5H1S c;  2PPT A;  4B8C D;  1B71 A;  4UY8 1;  1VCX A;  1PZX A;  4GS7 D;  1DX8 A;  3S2D L;  1K83 L;  3B0A B;  4LHL A;  1Y1W L;  3P2A A;  4AR4 A;  3J7Y 1;  2B63 L;  5EIN C;  2APO B;  1LKP A;  2ZIX A;  2AYJ A;  2H12 A;  3I4M L;  1S30 A;  3S2H L;  4A3E L;  1PFY A;  4V19 6;  1PFW A;  1I50 L;  1P7P A;  1R0F A;  3PIP 1;  3RZT A;  1IW7 D;  2KN9 A;  2E2I L;  3PZA A;  3FKI L;  4LHN A;  2PYA A;  3LWO B;  3PIO 1;  3HOV L;  1YUX A;  4JAG A;  1IU5 A;  4XGH A;  3LWR B;  5K2M E;  1R0I A;  1S24 A;  4AHW A;  1T9P A;  2WAQ P;  1R0H A;  4A3M L;  3MPS A;  1TWF L;  4BBS L;  4TVM A;  3GTL L;  4A3D L;  3MQK B;  1BQ9 A;  4YWL A;  7RXN A;  2L0Z A;  1B2O A;  1SFO L;  2A6H D;  4A3B L;  4AR3 A;  4AR6 A;  1PFU A;  3KYW A;  2V0E A;  3CQZ L;  1Z92 B;  1BFY A;  2B5I D;  2M6O A;  3PO3 L;  5IYD L;  1DVB A;  3S1R L;  2XJU A;  3QVD A;  3ZG6 A; 
#chains in the Genus database with same CATH homology
 1QCV A;  5GAE c;  4G6B A;  5AI3 A;  1RDG A;  2CR8 A;  2NYD A;  2QL0 A;  5H1S c;  1B13 A;  2M4V A;  2PPT A;  4B8C D;  5GAH c;  2Z3R B;  1B2J A;  2XJR A;  1B71 A;  3K35 A;  1YK5 A;  1H7V A;  4UY8 1;  1VCX A;  5JVH 1;  4GS7 D;  2Z3Q B;  3SS2 A;  1DX8 A;  4JAE A;  3B0A B;  4LHL A;  3P2A A;  2PSM C;  4AR4 A;  3B08 B;  4POF A;  2A69 D;  2PVX A;  3J7Y 1;  1NXG A;  2DSX A;  2O5J D;  1T9Q A;  3QQC E;  3VPB E;  4AI3 A;  1QYB A;  5EIN C;  1WJV A;  6RXN A;  1LKP A;  5EIO C;  1NNQ A;  2ZIX A;  3QVD A;  2AYJ A;  1ZRP A;  3NFP I;  3PWF A;  2H12 A;  1SMU A;  5AN9 H;  2C6A A;  3PKJ A;  1S30 A;  1E8J A;  2ERS A;  5MLC 3;  2XJS A;  1RWD A;  1VZG A;  4U67 1;  1SMM A;  4AI2 A;  3P8B A;  3RZ6 A;  3WWN B;  1OWB A;  1RYT A;  3KYX A;  1S2Z A;  2V0F A;  1RB9 A;  3KYY A;  1CAA A;  2J9U B;  1R0J A;  4V19 6;  1IU6 A;  1VZI A;  2A68 D;  4RXN A;  2ERJ A;  1R0F A;  2CKA A;  1YV1 A;  5GAD c;  1IRO A;  2K2D A;  3PIP 1;  3RZT A;  1IW7 D;  1BE7 A;  2KN9 A;  2HR5 A;  4AHX A;  3PZA A;  1OWC A;  3RYG A;  3IU3 I;  4LHN A;  2BE5 D;  4WFN 1;  2PYA A;  4ME3 A;  1JYB A;  3PIO 1;  5DM6 1;  2V3B B;  4K9F A;  1YUX A;  2CKC A;  2PVE A;  4JAG A;  4XXB B;  4AHY A;  1SMW A;  2KKD A;  1IU5 A;  4XGH A;  5DM7 1;  4POG A;  2JI3 A;  2LCQ A;  1T9O A;  1FHM A;  4YWM A;  1R0I A;  2XJQ A;  1S24 A;  1BQ8 A;  5AI2 A;  3WWL A;  2VL6 A;  4AHW A;  1T9P A;  1R0H A;  3J7Z 1;  1BRF A;  1LKM A;  3MPS A;  4JAF A;  1IRN A;  1RYQ A;  3PKI A;  1YUZ A;  2MS3 A;  4AR5 A;  5K2M E;  4TVM A;  8RXN A;  1FHH A;  1YK4 A;  3KYV A;  1R0G A;  2C6B A;  1LKO A;  1BQ9 A;  4YWL A;  5MF6 A;  4AI0 A;  7RXN A;  2L0Z A;  3A44 A;  1B2O A;  2A6E D;  1RDV A;  2M4Y A;  2M6P A;  2XJT A;  5MFP A;  1NXE A;  2A6H D;  1ODH A;  2XJP A;  3KYU A;  4AI1 A;  4AR3 A;  5MGN A;  5MFZ A;  4AR6 A;  5GAG c;  2JI2 A;  3ZG6 A;  3LNL A;  1LTL A;  3KYW A;  4ZN1 B;  4TPU A;  2V0E A;  5RXN A;  2JI1 A;  2GMG A;  2XJV A;  5IY0 A;  4JAD A;  5JVG 1;  1Z92 B;  4E6Y A;  4ZN3 B;  1BFY A;  2B5I D;  2M6O A;  3MSU A;  4AHZ A;  1C09 A;  1DVB A;  1VZH A;  2RDV A;  2XJU A;  1CAD A;  3LPE B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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