4TR8A

Crystal structure of dna polymerase sliding clamp from pseudomonas aeruginosa
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
382
structure length
379
Chain Sequence
HHHHHHSSGLVPRGSHMHFTIQREALLKPLQLVAGVVETLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA polymerase III subunit beta
publication title Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins.
pubmed doi rcsb
source organism Pseudomonas aeruginosa hb15
total genus 93
structure length 379
sequence length 382
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2014-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tr8A02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tr8A03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tr8A01
4PNUA 4K3OA 5AH4A 1JQJA 1OK7A 4N9AA 3D1EA 3PWEA 2AWAA 4K3RA 3Q4JA 4N95A 4K3SA 4MJPA 5FRQA 4K3QA 3Q4KA 2POLA 3L0XA 4MJRA 3D1GA 3L10A 3D1FA 3P16A 3Q4LA 3QSBB 4OVGA 5FVEA 4K3KA 2AVTA 4PNVA 3L0WA 1MMIA 1JQLA 1UNNA 4N94A 5AGVA 4K3PA 5AGUA 3RB9A 4TSZA 4N97A 4N96A 4OVFA 1VPKA 3BEPA 4S3IA 4MJQA 3PGEB 4TR7A 3QSBA 3F1VA 2XURA 3T0PA 4K3LA 4TRTA 4RKIA 4N99A 4K74A 4N98A 4OVHA 5AH2A 4TR6A 4PNWA 4K3MA 4TR8A
chains in the Genus database with same CATH superfamily
4PNUA 4K3OA 5AH4A 3L0XB 1JQJA 3PGEA 1OK7A 3L10B 4N9AA 3D1EA 3PWEA 2AWAA 4K3RA 3L0WB 3Q4JA 4N95A 4K3SA 4MJPA 5FRQA 4K3QA 3Q4KA 2POLA 3L0XA 4MJRA 3D1GA 3L10A 3D1FA 3P16A 3Q4LA 3QSBB 4OVGA 5FVEA 4K3KA 2AVTA 4PNVA 3L0WA 1MMIA 1JQLA 1UNNA 4N94A 5AGVA 4K3PA 5AGUA 3RB9A 4TSZA 4N97A 4N96A 4OVFA 1VPKA 3BEPA 4S3IA 4MJQA 3PGEB 4TR7A 3QSBA 3F1VA 2XURA 3T0PA 4K3LA 4TRTA 4RKIA 4N99A 4K74A 4N98A 4OVHA 5AH2A 4TR6A 4PNWA 4K3MA 4TR8A
chains in the Genus database with same CATH topology
4PNUA 4K3OA 5AH4A 1JQJA 1OK7A 4N9AA 3D1EA 3PWEA 2AWAA 4K3RA 3Q4JA 4N95A 4K3SA 4MJPA 5FRQA 4K3QA 3Q4KA 2POLA 3L0XA 4MJRA 3D1GA 3L10A 3D1FA 3P16A 3Q4LA 3QSBB 4OVGA 5FVEA 4K3KA 2AVTA 4PNVA 3L0WA 1MMIA 1JQLA 1UNNA 4N94A 5AGVA 4K3PA 5AGUA 3RB9A 4TSZA 4N97A 4N96A 4OVFA 1VPKA 3BEPA 4S3IA 4MJQA 3PGEB 4TR7A 3QSBA 3F1VA 2XURA 3T0PA 4K3LA 4TRTA 4RKIA 4N99A 4K74A 4N98A 4OVHA 5AH2A 4TR6A 4PNWA 4K3MA 4TR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PNU A;  4K3O A;  5AH4 A;  1JQJ A;  1OK7 A;  4N9A A;  3D1E A;  3PWE A;  2AWA A;  4K3R A;  3Q4J A;  4N95 A;  4K3S A;  4MJP A;  5FRQ A;  4K3Q A;  3Q4K A;  2POL A;  3L0X A;  4MJR A;  3D1G A;  3L10 A;  3D1F A;  3P16 A;  3Q4L A;  3QSB B;  4OVG A;  5FVE A;  4K3K A;  2AVT A;  4PNV A;  3L0W A;  1MMI A;  1JQL A;  1UNN A;  4N94 A;  5AGV A;  4K3P A;  5AGU A;  3RB9 A;  4TSZ A;  4N97 A;  4N96 A;  4OVF A;  1VPK A;  3BEP A;  4S3I A;  4MJQ A;  3PGE B;  4TR7 A;  3QSB A;  3F1V A;  2XUR A;  3T0P A;  4K3L A;  4TRT A;  4RKI A;  4N99 A;  4K74 A;  4N98 A;  4OVH A;  5AH2 A;  4TR6 A;  4PNW A;  4K3M A;  4TR8 A; 
#chains in the Genus database with same CATH topology
 4PNU A;  4K3O A;  5AH4 A;  3L0X B;  1JQJ A;  3PGE A;  1OK7 A;  3L10 B;  4N9A A;  3D1E A;  3PWE A;  2AWA A;  4K3R A;  3L0W B;  3Q4J A;  4N95 A;  4K3S A;  4MJP A;  5FRQ A;  4K3Q A;  3Q4K A;  2POL A;  3L0X A;  4MJR A;  3D1G A;  3L10 A;  3D1F A;  3P16 A;  3Q4L A;  3QSB B;  4OVG A;  5FVE A;  4K3K A;  2AVT A;  4PNV A;  3L0W A;  1MMI A;  1JQL A;  1UNN A;  4N94 A;  5AGV A;  4K3P A;  5AGU A;  3RB9 A;  4TSZ A;  4N97 A;  4N96 A;  4OVF A;  1VPK A;  3BEP A;  4S3I A;  4MJQ A;  3PGE B;  4TR7 A;  3QSB A;  3F1V A;  2XUR A;  3T0P A;  4K3L A;  4TRT A;  4RKI A;  4N99 A;  4K74 A;  4N98 A;  4OVH A;  5AH2 A;  4TR6 A;  4PNW A;  4K3M A;  4TR8 A; 
#chains in the Genus database with same CATH homology
 4PNU A;  4K3O A;  5AH4 A;  1JQJ A;  1OK7 A;  4N9A A;  3D1E A;  3PWE A;  2AWA A;  4K3R A;  3Q4J A;  4N95 A;  4K3S A;  4MJP A;  5FRQ A;  4K3Q A;  3Q4K A;  2POL A;  3L0X A;  4MJR A;  3D1G A;  3L10 A;  3D1F A;  3P16 A;  3Q4L A;  3QSB B;  4OVG A;  5FVE A;  4K3K A;  2AVT A;  4PNV A;  3L0W A;  1MMI A;  1JQL A;  1UNN A;  4N94 A;  5AGV A;  4K3P A;  5AGU A;  3RB9 A;  4TSZ A;  4N97 A;  4N96 A;  4OVF A;  1VPK A;  3BEP A;  4S3I A;  4MJQ A;  3PGE B;  4TR7 A;  3QSB A;  3F1V A;  2XUR A;  3T0P A;  4K3L A;  4TRT A;  4RKI A;  4N99 A;  4K74 A;  4N98 A;  4OVH A;  5AH2 A;  4TR6 A;  4PNW A;  4K3M A;  4TR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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