4U2MA

Crystal structure of a complex of the miz1- and bcl6 poz domains.
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
249
structure length
228
Chain Sequence
DFPQHSQHVLEQLNQQRQLGLLCDCTFVGVHFKAHKAVLAACSEYFKMLFVDQNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Zinc finger and BTB domain-containing protein 17,B-cell lymp
publication title Structures of heterodimeric POZ domains of Miz1/BCL6 and Miz1/NAC1.
pubmed doi rcsb
source organism Homo sapiens
total genus 79
structure length 228
sequence length 249
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00651 BTB BTB/POZ domain
A PF00651 BTB BTB/POZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 4u2mA02
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 4u2mA01
4BKSB 2OVRA 3OGMA 3C6NA 4U2NA 3E4UA 3OGLA 1NN7A 3C6PA 4W9IB 2IF5A 5A15A 4W9DB 4J8ZA 2NZ0B 1EODA 3BIMA 3DCGB 3ZUNB 3HQIA 2R9RB 4AJYC 4B9KB 1EOEA 4W9KB 5HYWB 4W9EB 3OHUA 1EOFA 3OHVA 4W9LB 1LDKD 2IHCA 4APFA 4W9JB 3ZNGB 1R28A 5DAFA 1CS3A 4W9HH 2PPIA 3V7DA 3M5BA 2Q81A 1A68A 1QDVA 4W9GB 2E31B 3M4TA 2ASSA 4WQOC 4BGCA 4AWJB 3I3NA 3HVEB 2IZVC 3ZTDB 2C9WC 1QDWA 2OVPA 3L2OA 2P1QA 1LQBB 4N9F5 4CP3A 4HXIA 4EOZA 3LBZA 1VCBB 3HTMA 3GA1A 5LLIB 4B9KE 4JTAB 5EUPA 4CXTA 1P22B 3ZKJB 5BXDA 3FKCA 2I2RA 2P1MA 5JH5B 1S1GA 4CXIA 5DADA 5A6RA 3LUTB 2P1NA 4JTCB 4UYIA 3HVEA 4W9CB 4W9FB 1R2BA 3ZRFB 2OVQA 4JGHC 5BXHA 3LNMB 2NN2A 1FQVB 3M8VA 5FTAA 3DRZA 3ZRCB 3C6OA 1R29A 4U77A 3M52A 5H7HA 4I6JC 4JTDB 1LM8C 4CXJA 3OGKA 2VPKA 1DSXA 2YY9A 2P1PA 3MKSA 3ZTCB 4BKTB 5BO4C 2P1OA 1BUOA 2E32B 2Z8HA 1FS1B 1FS2B 2VKPA 2FNJC 4W9HB 5H7GA 5IBKA 1EXBE 3B84A 5BXBA 1T1DA 4U2MA 4UIJA 1NEXA 4CRHA 3WSOB 3HU6A 4B95B 2MA9C 4ZOUA 5HZGC 1HV2A 2A79B 4AP2A 3KVTA 2ASTA 2JZ3C
chains in the Genus database with same CATH superfamily
4BKSB 2OVRA 3OGMA 3C6NA 4U2NA 3E4UA 3OGLA 1NN7A 3C6PA 4W9IB 2IF5A 5A15A 4W9DB 4J8ZA 2NZ0B 1EODA 3BIMA 3DCGB 3ZUNB 3HQIA 2R9RB 4AJYC 4B9KB 1EOEA 4W9KB 5HYWB 4W9EB 3OHUA 1EOFA 3OHVA 4W9LB 1LDKD 2IHCA 4APFA 4W9JB 3ZNGB 1R28A 5DAFA 1CS3A 4W9HH 2PPIA 3V7DA 3M5BA 2Q81A 1A68A 1QDVA 4W9GB 2E31B 3M4TA 2ASSA 4WQOC 4BGCA 4AWJB 3I3NA 3HVEB 2IZVC 3ZTDB 2C9WC 1QDWA 2OVPA 3L2OA 2P1QA 1LQBB 4N9F5 4CP3A 4HXIA 4EOZA 3LBZA 1VCBB 3HTMA 3GA1A 5LLIB 4B9KE 4JTAB 5EUPA 4CXTA 1P22B 3ZKJB 5BXDA 3FKCA 2I2RA 3DRXA 2P1MA 5JH5B 1S1GA 4CXIA 5DADA 5A6RA 3LUTB 2P1NA 4JTCB 4UYIA 3HVEA 4W9CB 4W9FB 1R2BA 3ZRFB 2OVQA 4JGHC 4ZGCA 5BXHA 3LNMB 2NN2A 1FQVB 3M8VA 5FTAA 3DRZA 3ZRCB 3C6OA 1R29A 4U77A 3M52A 5H7HA 4I6JC 4JTDB 1LM8C 4CXJA 3OGKA 2VPKA 1DSXA 2YY9A 2P1PA 3DRYA 3MKSA 3ZTCB 4BKTB 5BO4C 2P1OA 1BUOA 2E32B 2Z8HA 1FS1B 1FS2B 2VKPA 2FNJC 4W9HB 5H7GA 5IBKA 1EXBE 3B84A 5BXBA 1T1DA 4U2MA 4UIJA 1NEXA 4CRHA 3WSOB 3HU6A 4B95B 2MA9C 4ZOUA 5HZGC 1HV2A 4YY8A 2A79B 4AP2A 3KVTA 2ASTA 2JZ3C
chains in the Genus database with same CATH topology
4BKSB 2OVRA 3OGMA 3C6NA 4U2NA 3E4UA 3OGLA 1NN7A 3C6PA 4W9IB 2IF5A 5A15A 4W9DB 4J8ZA 2NZ0B 1EODA 3BIMA 3DCGB 3ZUNB 3HQIA 2R9RB 4AJYC 4B9KB 1EOEA 4W9KB 5HYWB 4W9EB 3OHUA 1EOFA 3OHVA 4W9LB 1LDKD 2IHCA 4APFA 4W9JB 3ZNGB 1R28A 5DAFA 1CS3A 4W9HH 2PPIA 3V7DA 3M5BA 2Q81A 1A68A 1QDVA 4W9GB 2E31B 3M4TA 2ASSA 4WQOC 4BGCA 4AWJB 3I3NA 3HVEB 2IZVC 3ZTDB 2C9WC 1QDWA 2OVPA 3L2OA 2P1QA 1LQBB 4N9F5 4CP3A 4HXIA 4EOZA 3LBZA 1VCBB 3HTMA 3GA1A 5LLIB 4B9KE 4JTAB 5EUPA 4CXTA 1P22B 3ZKJB 5BXDA 3FKCA 2I2RA 3DRXA 2P1MA 5JH5B 1S1GA 4CXIA 5DADA 5A6RA 3LUTB 2P1NA 4JTCB 4UYIA 3HVEA 4W9CB 4W9FB 1R2BA 3ZRFB 2OVQA 4JGHC 4ZGCA 5BXHA 3LNMB 2NN2A 1FQVB 3M8VA 5FTAA 3DRZA 3ZRCB 3C6OA 1R29A 4U77A 3M52A 5H7HA 4I6JC 4JTDB 1LM8C 4CXJA 3OGKA 2VPKA 1DSXA 2YY9A 2P1PA 3DRYA 3MKSA 3ZTCB 4BKTB 5BO4C 2P1OA 1BUOA 2E32B 2Z8HA 1FS1B 1FS2B 2VKPA 2FNJC 4W9HB 5H7GA 5IBKA 1EXBE 3B84A 5BXBA 1T1DA 4U2MA 4UIJA 1NEXA 4CRHA 3WSOB 3HU6A 4B95B 2MA9C 4ZOUA 5HZGC 1HV2A 4YY8A 2A79B 4AP2A 3KVTA 2ASTA 2JZ3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BKS B;  2OVR A;  3OGM A;  3C6N A;  4U2N A;  3E4U A;  3OGL A;  1NN7 A;  3C6P A;  4W9I B;  2IF5 A;  5A15 A;  4W9D B;  4J8Z A;  2NZ0 B;  1EOD A;  3BIM A;  3DCG B;  3ZUN B;  3HQI A;  2R9R B;  4AJY C;  4B9K B;  1EOE A;  4W9K B;  5HYW B;  4W9E B;  3OHU A;  1EOF A;  3OHV A;  4W9L B;  1LDK D;  2IHC A;  4APF A;  4W9J B;  3ZNG B;  1R28 A;  5DAF A;  1CS3 A;  4W9H H;  2PPI A;  3V7D A;  3M5B A;  2Q81 A;  1A68 A;  1QDV A;  4W9G B;  2E31 B;  3M4T A;  2ASS A;  4WQO C;  4BGC A;  4AWJ B;  3I3N A;  3HVE B;  2IZV C;  3ZTD B;  2C9W C;  1QDW A;  2OVP A;  3L2O A;  2P1Q A;  1LQB B;  4N9F 5;  4CP3 A;  4HXI A;  4EOZ A;  3LBZ A;  1VCB B;  3HTM A;  3GA1 A;  5LLI B;  4B9K E;  4JTA B;  5EUP A;  4CXT A;  1P22 B;  3ZKJ B;  5BXD A;  3FKC A;  2I2R A;  2P1M A;  5JH5 B;  1S1G A;  4CXI A;  5DAD A;  5A6R A;  3LUT B;  2P1N A;  4JTC B;  4UYI A;  3HVE A;  4W9C B;  4W9F B;  1R2B A;  3ZRF B;  2OVQ A;  4JGH C;  5BXH A;  3LNM B;  2NN2 A;  1FQV B;  3M8V A;  5FTA A;  3DRZ A;  3ZRC B;  3C6O A;  1R29 A;  4U77 A;  3M52 A;  5H7H A;  4I6J C;  4JTD B;  1LM8 C;  4CXJ A;  3OGK A;  2VPK A;  1DSX A;  2YY9 A;  2P1P A;  3MKS A;  3ZTC B;  4BKT B;  5BO4 C;  2P1O A;  1BUO A;  2E32 B;  2Z8H A;  1FS1 B;  1FS2 B;  2VKP A;  2FNJ C;  4W9H B;  5H7G A;  5IBK A;  1EXB E;  3B84 A;  5BXB A;  1T1D A;  4U2M A;  4UIJ A;  1NEX A;  4CRH A;  3WSO B;  3HU6 A;  4B95 B;  2MA9 C;  4ZOU A;  5HZG C;  1HV2 A;  2A79 B;  4AP2 A;  3KVT A;  2AST A;  2JZ3 C; 
#chains in the Genus database with same CATH topology
 4BKS B;  2OVR A;  3OGM A;  3C6N A;  4U2N A;  3E4U A;  3OGL A;  1NN7 A;  3C6P A;  4W9I B;  2IF5 A;  5A15 A;  4W9D B;  4J8Z A;  2NZ0 B;  1EOD A;  3BIM A;  3DCG B;  3ZUN B;  3HQI A;  2R9R B;  4AJY C;  4B9K B;  1EOE A;  4W9K B;  5HYW B;  4W9E B;  3OHU A;  1EOF A;  3OHV A;  4W9L B;  1LDK D;  2IHC A;  4APF A;  4W9J B;  3ZNG B;  1R28 A;  5DAF A;  1CS3 A;  4W9H H;  2PPI A;  3V7D A;  3M5B A;  2Q81 A;  1A68 A;  1QDV A;  4W9G B;  2E31 B;  3M4T A;  2ASS A;  4WQO C;  4BGC A;  4AWJ B;  3I3N A;  3HVE B;  2IZV C;  3ZTD B;  2C9W C;  1QDW A;  2OVP A;  3L2O A;  2P1Q A;  1LQB B;  4N9F 5;  4CP3 A;  4HXI A;  4EOZ A;  3LBZ A;  1VCB B;  3HTM A;  3GA1 A;  5LLI B;  4B9K E;  4JTA B;  5EUP A;  4CXT A;  1P22 B;  3ZKJ B;  5BXD A;  3FKC A;  2I2R A;  3DRX A;  2P1M A;  5JH5 B;  1S1G A;  4CXI A;  5DAD A;  5A6R A;  3LUT B;  2P1N A;  4JTC B;  4UYI A;  3HVE A;  4W9C B;  4W9F B;  1R2B A;  3ZRF B;  2OVQ A;  4JGH C;  4ZGC A;  5BXH A;  3LNM B;  2NN2 A;  1FQV B;  3M8V A;  5FTA A;  3DRZ A;  3ZRC B;  3C6O A;  1R29 A;  4U77 A;  3M52 A;  5H7H A;  4I6J C;  4JTD B;  1LM8 C;  4CXJ A;  3OGK A;  2VPK A;  1DSX A;  2YY9 A;  2P1P A;  3DRY A;  3MKS A;  3ZTC B;  4BKT B;  5BO4 C;  2P1O A;  1BUO A;  2E32 B;  2Z8H A;  1FS1 B;  1FS2 B;  2VKP A;  2FNJ C;  4W9H B;  5H7G A;  5IBK A;  1EXB E;  3B84 A;  5BXB A;  1T1D A;  4U2M A;  4UIJ A;  1NEX A;  4CRH A;  3WSO B;  3HU6 A;  4B95 B;  2MA9 C;  4ZOU A;  5HZG C;  1HV2 A;  4YY8 A;  2A79 B;  4AP2 A;  3KVT A;  2AST A;  2JZ3 C; 
#chains in the Genus database with same CATH homology
 4BKS B;  2OVR A;  3OGM A;  3C6N A;  4U2N A;  3E4U A;  3OGL A;  1NN7 A;  3C6P A;  4W9I B;  2IF5 A;  5A15 A;  4W9D B;  4J8Z A;  2NZ0 B;  1EOD A;  3BIM A;  3DCG B;  3ZUN B;  3HQI A;  2R9R B;  4AJY C;  4B9K B;  1EOE A;  4W9K B;  5HYW B;  4W9E B;  3OHU A;  1EOF A;  3OHV A;  4W9L B;  1LDK D;  2IHC A;  4APF A;  4W9J B;  3ZNG B;  1R28 A;  5DAF A;  1CS3 A;  4W9H H;  2PPI A;  3V7D A;  3M5B A;  2Q81 A;  1A68 A;  1QDV A;  4W9G B;  2E31 B;  3M4T A;  2ASS A;  4WQO C;  4BGC A;  4AWJ B;  3I3N A;  3HVE B;  2IZV C;  3ZTD B;  2C9W C;  1QDW A;  2OVP A;  3L2O A;  2P1Q A;  1LQB B;  4N9F 5;  4CP3 A;  4HXI A;  4EOZ A;  3LBZ A;  1VCB B;  3HTM A;  3GA1 A;  5LLI B;  4B9K E;  4JTA B;  5EUP A;  4CXT A;  1P22 B;  3ZKJ B;  5BXD A;  3FKC A;  2I2R A;  3DRX A;  2P1M A;  5JH5 B;  1S1G A;  4CXI A;  5DAD A;  5A6R A;  3LUT B;  2P1N A;  4JTC B;  4UYI A;  3HVE A;  4W9C B;  4W9F B;  1R2B A;  3ZRF B;  2OVQ A;  4JGH C;  4ZGC A;  5BXH A;  3LNM B;  2NN2 A;  1FQV B;  3M8V A;  5FTA A;  3DRZ A;  3ZRC B;  3C6O A;  1R29 A;  4U77 A;  3M52 A;  5H7H A;  4I6J C;  4JTD B;  1LM8 C;  4CXJ A;  3OGK A;  2VPK A;  1DSX A;  2YY9 A;  2P1P A;  3DRY A;  3MKS A;  3ZTC B;  4BKT B;  5BO4 C;  2P1O A;  1BUO A;  2E32 B;  2Z8H A;  1FS1 B;  1FS2 B;  2VKP A;  2FNJ C;  4W9H B;  5H7G A;  5IBK A;  1EXB E;  3B84 A;  5BXB A;  1T1D A;  4U2M A;  4UIJ A;  1NEX A;  4CRH A;  3WSO B;  3HU6 A;  4B95 B;  2MA9 C;  4ZOU A;  5HZG C;  1HV2 A;  4YY8 A;  2A79 B;  4AP2 A;  3KVT A;  2AST A;  2JZ3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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