4U65E

Structure of the periplasmic output domain of the legionella pneumophila lapd ortholog cdgs9 in complex with pseudomonas fluorescens lapg
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
197
structure length
181
Chain Sequence
ADWDFSAISRKATALYGPLGAGQQRIDAWQNLLATQKQVSEMEKLKVVNLFFNKQMRYVEDIDLWHEVDYWETPIEALWKGAGDCEDYAIAKYFSLRHLGVASDKLRITYVKALRQNRAHMVLTYYSSPDAMPLVLDSLIDPIKPAAERTDLLPVYSFNAEGLLSRWQDVLKKMQAEGFPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/hydrolase
molecule keywords Two component histidine kinase, GGDEF domain protein/EAL dom
publication title Mechanistic insight into the conserved allosteric regulation of periplasmic proteolysis by the signaling molecule cyclic-di-GMP.
pubmed doi rcsb
source organism Legionella pneumophila subsp. pneumophila
total genus 57
structure length 181
sequence length 197
chains with identical sequence F
ec nomenclature
pdb deposition date 2014-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF06035 Peptidase_C93 Bacterial transglutaminase-like cysteine proteinase BTLCP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.620.30 Alpha Beta Roll C8orf32 fold C8orf32 fold 4u65E00
3ISRA 3A55A 2F4OA 3KD4A 3A56A 4FGPA 4FGQA 4FGOA 4U65E 3ESWA 3A54A 2KSVA 2F4MA 2ZK9X
chains in the Genus database with same CATH superfamily
3ISRA 3C9QA 4W79A 3A55A 2F4OA 3KD4A 3A56A 4FGPA 4FGQA 4FGOA 4U65E 3ESWA 3A54A 2KSVA 2F4MA 2ZK9X
chains in the Genus database with same CATH topology
3ISRA 3A55A 2F4OA 3KD4A 3A56A 4FGPA 4FGQA 4FGOA 4U65E 3ESWA 3A54A 2KSVA 2F4MA 2ZK9X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ISR A;  3A55 A;  2F4O A;  3KD4 A;  3A56 A;  4FGP A;  4FGQ A;  4FGO A;  4U65 E;  3ESW A;  3A54 A;  2KSV A;  2F4M A;  2ZK9 X; 
#chains in the Genus database with same CATH topology
 3ISR A;  3C9Q A;  4W79 A;  3A55 A;  2F4O A;  3KD4 A;  3A56 A;  4FGP A;  4FGQ A;  4FGO A;  4U65 E;  3ESW A;  3A54 A;  2KSV A;  2F4M A;  2ZK9 X; 
#chains in the Genus database with same CATH homology
 3ISR A;  3A55 A;  2F4O A;  3KD4 A;  3A56 A;  4FGP A;  4FGQ A;  4FGO A;  4U65 E;  3ESW A;  3A54 A;  2KSV A;  2F4M A;  2ZK9 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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