4U67J

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
total genus 21
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2014-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4u67J01
1KQSH 3PIOJ 1Q7YJ 4IOCJ 3CCRH 1N8RJ 3DLLJ 1QVGH 5GAEN 2OTLH 1YIJH 2ZJQJ 1KD1J 5DM7J 2QEXH 3CMAH 2ZJRJ 4WFNJ 1K73J 1VQ4H 1VQ7H 3CPWH 1QVFH 3CMEH 2OTJH 3CCSH 1VQPH 3CCMH 1M90J 1WKIA 4WFBJ 1S72H 1YHQH 5GAHN 2ZJPJ 4UY8M 2QA4H 1Q86J 3CF5J 5DM6J 3G6EH 3PIPJ 4WF9J 3CXCH 3I56H 1W2BH 1VQKH 1VQ6H 4WFAJ 5HL7J 4IOAJ 3CCEH 3CC7H 1K8AJ 3I55H 1VQLH 3CCQH 1VQNH 3OW2H 3CC4H 1JJ2H 1VQ5H 1YJ9H 3CCVH 5JVGJ 1K9MJ 3CCJH 5AN9F 3CC2H 1VQ8H 5MLCO 5GAGN 5GADN 3CD6H 4U67J 1VQ9H 1VQMH 1YI2H 1KC8J 5JVHJ 3G71H 1Q82J 1NJIJ 5H1SO 4WCEJ 3CCLH 3CCUH 1YITH 1VQOH 1Q81J 1M1KJ 1Y69K 1YJWH 4IO9J 3J7ZM 1YJNH 2PA2A 3G4SH
chains in the Genus database with same CATH superfamily
1KQSH 1O4UA 1VLBA 4AP8A 4US9A 2TPTA 4C80A 3PIOJ 1Q7YJ 4IOCJ 3CCRH 2J0FA 5HULA 1N8RJ 3FAHA 4C7YA 1OTPA 1V97A 4GA4A 3DLLJ 1NVJA 1QVGH 1YTEA 3VMMA 3C2VA 2WK5A 3C2RA 1SB3A 5GAEN 2OTLH 3L4PA 1YIJH 2ZJQJ 1KD1J 5DM7J 2B7NA 1X1OA 3EUB4 3C2FA 2QEXH 1JRPB 3CMAH 2ZJRJ 4WFNJ 3NVZC 1K73J 4EADA 4ZOHA 1VQ4H 1VDVA 1FO4A 1VQ7H 5MPOC 3CPWH 2WK6A 3WO1A 4US8A 3CMEH 1QVFH 2OTJH 1SIJA 2I1OA 3CCSH 1VQPH 1FFVB 1FM0E 3CCMH 1M90J 2JBMA 2B7QA 1WKIA 5HUOA 3PAJA 4WFBJ 3C2OA 1S72H 1JROB 1N60B 5AYXA 4YEKA 5GAHN 1YHQH 1FIQC 2ZJPJ 2WP4A 4UY8M 4X46A 3RPFA 1RM6A 2QA4H 1Q86J 4EAFA 4C7ZA 3CF5J 5DM6J 4XR5A 2QIEA 3ETRC 3G6EH 3PIPJ 4KWWA 4USAA 1NVIE 4WF9J 3CXCH 3I56H 1W2BH 1VQKH 4LHMA 1VQ6H 3NRZC 1N5XA 2W55B 4KWVA 4WFAJ 5EY3A 5HL7J 4IOAJ 2W3RB 3AMZA 1WYGA 3TQVA 3CCEH 3CC7H 3B9JC 3FC4A 1FMAE 1K8AJ 3I55H 1VQLH 2OMDA 3AN1A 3CCQH 5EP8A 1VQNH 3BIIE 5AYYA 3OW2H 3NS1C 3CC4H 3NVWC 2I14A 1JJ2H 1VQ5H 1YJ9H 1N61B 3CCVH 4GA5A 3WO0A 5JVGJ 1K9MJ 3CCJH 5AN9F 1BRWA 3CC2H 1VQ8H 5MLCO 3WNZA 3C2EA 5GAGN 4GA6A 5GADN 1AZYA 3CD6H 1QPOA 4U67J 2Q5WE 1VQ9H 1YTKA 1VQMH 2W54B 1YI2H 1QPQA 1N62B 3H5QA 1N63B 3NVYC 4I9AA 1KC8J 1QAPA 2B7PA 3NVVC 5JVHJ 3AM9A 3G71H 1Q82J 1NJIJ 2W3SB 5H1SO 1N5WB 1ZXIB 2DSJA 3SR6C 1QPNA 1DGJA 4WCEJ 1QPRA 5AYZA 1YTDA 3CCLH 3CCUH 1YITH 1VQOH 1Q81J 4YYYA 1M1KJ 1Y69K 1UOUA 2E3TA 1YJWH 4IO9J 3J7ZM 5HUPA 3L0GA 1YJNH 2PA2A 1FFUB 3G4SH 3GNNA
chains in the Genus database with same CATH topology
1KQSH 3PIOJ 1Q7YJ 4IOCJ 3CCRH 1N8RJ 3DLLJ 1QVGH 5GAEN 2OTLH 1YIJH 2ZJQJ 1KD1J 5DM7J 2QEXH 3CMAH 2ZJRJ 4WFNJ 1K73J 1VQ4H 1VQ7H 3CPWH 1QVFH 3CMEH 2OTJH 3CCSH 1VQPH 3CCMH 1M90J 1WKIA 4WFBJ 1S72H 1YHQH 5GAHN 2ZJPJ 4UY8M 2QA4H 1Q86J 3CF5J 5DM6J 3G6EH 3PIPJ 4WF9J 3CXCH 3I56H 1W2BH 1VQKH 1VQ6H 4WFAJ 5HL7J 4IOAJ 3CCEH 3CC7H 1K8AJ 3I55H 1VQLH 3CCQH 1VQNH 3OW2H 3CC4H 1JJ2H 1VQ5H 1YJ9H 3CCVH 5JVGJ 1K9MJ 3CCJH 5AN9F 3CC2H 1VQ8H 5MLCO 5GAGN 5GADN 3CD6H 4U67J 1VQ9H 1VQMH 1YI2H 1KC8J 5JVHJ 3G71H 1Q82J 1NJIJ 5H1SO 4WCEJ 3CCLH 3CCUH 1YITH 1VQOH 1Q81J 1M1KJ 1Y69K 1YJWH 4IO9J 3J7ZM 1YJNH 2PA2A 3G4SH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQS H;  3PIO J;  1Q7Y J;  4IOC J;  3CCR H;  1N8R J;  3DLL J;  1QVG H;  5GAE N;  2OTL H;  1YIJ H;  2ZJQ J;  1KD1 J;  5DM7 J;  2QEX H;  3CMA H;  2ZJR J;  4WFN J;  1K73 J;  1VQ4 H;  1VQ7 H;  3CPW H;  1QVF H;  3CME H;  2OTJ H;  3CCS H;  1VQP H;  3CCM H;  1M90 J;  1WKI A;  4WFB J;  1S72 H;  1YHQ H;  5GAH N;  2ZJP J;  4UY8 M;  2QA4 H;  1Q86 J;  3CF5 J;  5DM6 J;  3G6E H;  3PIP J;  4WF9 J;  3CXC H;  3I56 H;  1W2B H;  1VQK H;  1VQ6 H;  4WFA J;  5HL7 J;  4IOA J;  3CCE H;  3CC7 H;  1K8A J;  3I55 H;  1VQL H;  3CCQ H;  1VQN H;  3OW2 H;  3CC4 H;  1JJ2 H;  1VQ5 H;  1YJ9 H;  3CCV H;  5JVG J;  1K9M J;  3CCJ H;  5AN9 F;  3CC2 H;  1VQ8 H;  5MLC O;  5GAG N;  5GAD N;  3CD6 H;  4U67 J;  1VQ9 H;  1VQM H;  1YI2 H;  1KC8 J;  5JVH J;  3G71 H;  1Q82 J;  1NJI J;  5H1S O;  4WCE J;  3CCL H;  3CCU H;  1YIT H;  1VQO H;  1Q81 J;  1M1K J;  1Y69 K;  1YJW H;  4IO9 J;  3J7Z M;  1YJN H;  2PA2 A;  3G4S H; 
#chains in the Genus database with same CATH topology
 1KQS H;  1O4U A;  1VLB A;  4AP8 A;  4US9 A;  2TPT A;  4C80 A;  3PIO J;  1Q7Y J;  4IOC J;  3CCR H;  2J0F A;  5HUL A;  1N8R J;  3FAH A;  4C7Y A;  1OTP A;  1V97 A;  4GA4 A;  3DLL J;  1NVJ A;  1QVG H;  1YTE A;  3VMM A;  3C2V A;  2WK5 A;  3C2R A;  1SB3 A;  5GAE N;  2OTL H;  3L4P A;  1YIJ H;  2ZJQ J;  1KD1 J;  5DM7 J;  2B7N A;  1X1O A;  3EUB 4;  3C2F A;  2QEX H;  1JRP B;  3CMA H;  2ZJR J;  4WFN J;  3NVZ C;  1K73 J;  4EAD A;  4ZOH A;  1VQ4 H;  1VDV A;  1FO4 A;  1VQ7 H;  5MPO C;  3CPW H;  2WK6 A;  3WO1 A;  4US8 A;  3CME H;  1QVF H;  2OTJ H;  1SIJ A;  2I1O A;  3CCS H;  1VQP H;  1FFV B;  1FM0 E;  3CCM H;  1M90 J;  2JBM A;  2B7Q A;  1WKI A;  5HUO A;  3PAJ A;  4WFB J;  3C2O A;  1S72 H;  1JRO B;  1N60 B;  5AYX A;  4YEK A;  5GAH N;  1YHQ H;  1FIQ C;  2ZJP J;  2WP4 A;  4UY8 M;  4X46 A;  3RPF A;  1RM6 A;  2QA4 H;  1Q86 J;  4EAF A;  4C7Z A;  3CF5 J;  5DM6 J;  4XR5 A;  2QIE A;  3ETR C;  3G6E H;  3PIP J;  4KWW A;  4USA A;  1NVI E;  4WF9 J;  3CXC H;  3I56 H;  1W2B H;  1VQK H;  4LHM A;  1VQ6 H;  3NRZ C;  1N5X A;  2W55 B;  4KWV A;  4WFA J;  5EY3 A;  5HL7 J;  4IOA J;  2W3R B;  3AMZ A;  1WYG A;  3TQV A;  3CCE H;  3CC7 H;  3B9J C;  3FC4 A;  1FMA E;  1K8A J;  3I55 H;  1VQL H;  2OMD A;  3AN1 A;  3CCQ H;  5EP8 A;  1VQN H;  3BII E;  5AYY A;  3OW2 H;  3NS1 C;  3CC4 H;  3NVW C;  2I14 A;  1JJ2 H;  1VQ5 H;  1YJ9 H;  1N61 B;  3CCV H;  4GA5 A;  3WO0 A;  5JVG J;  1K9M J;  3CCJ H;  5AN9 F;  1BRW A;  3CC2 H;  1VQ8 H;  5MLC O;  3WNZ A;  3C2E A;  5GAG N;  4GA6 A;  5GAD N;  1AZY A;  3CD6 H;  1QPO A;  4U67 J;  2Q5W E;  1VQ9 H;  1YTK A;  1VQM H;  2W54 B;  1YI2 H;  1QPQ A;  1N62 B;  3H5Q A;  1N63 B;  3NVY C;  4I9A A;  1KC8 J;  1QAP A;  2B7P A;  3NVV C;  5JVH J;  3AM9 A;  3G71 H;  1Q82 J;  1NJI J;  2W3S B;  5H1S O;  1N5W B;  1ZXI B;  2DSJ A;  3SR6 C;  1QPN A;  1DGJ A;  4WCE J;  1QPR A;  5AYZ A;  1YTD A;  3CCL H;  3CCU H;  1YIT H;  1VQO H;  1Q81 J;  4YYY A;  1M1K J;  1Y69 K;  1UOU A;  2E3T A;  1YJW H;  4IO9 J;  3J7Z M;  5HUP A;  3L0G A;  1YJN H;  2PA2 A;  1FFU B;  3G4S H;  3GNN A; 
#chains in the Genus database with same CATH homology
 1KQS H;  3PIO J;  1Q7Y J;  4IOC J;  3CCR H;  1N8R J;  3DLL J;  1QVG H;  5GAE N;  2OTL H;  1YIJ H;  2ZJQ J;  1KD1 J;  5DM7 J;  2QEX H;  3CMA H;  2ZJR J;  4WFN J;  1K73 J;  1VQ4 H;  1VQ7 H;  3CPW H;  1QVF H;  3CME H;  2OTJ H;  3CCS H;  1VQP H;  3CCM H;  1M90 J;  1WKI A;  4WFB J;  1S72 H;  1YHQ H;  5GAH N;  2ZJP J;  4UY8 M;  2QA4 H;  1Q86 J;  3CF5 J;  5DM6 J;  3G6E H;  3PIP J;  4WF9 J;  3CXC H;  3I56 H;  1W2B H;  1VQK H;  1VQ6 H;  4WFA J;  5HL7 J;  4IOA J;  3CCE H;  3CC7 H;  1K8A J;  3I55 H;  1VQL H;  3CCQ H;  1VQN H;  3OW2 H;  3CC4 H;  1JJ2 H;  1VQ5 H;  1YJ9 H;  3CCV H;  5JVG J;  1K9M J;  3CCJ H;  5AN9 F;  3CC2 H;  1VQ8 H;  5MLC O;  5GAG N;  5GAD N;  3CD6 H;  4U67 J;  1VQ9 H;  1VQM H;  1YI2 H;  1KC8 J;  5JVH J;  3G71 H;  1Q82 J;  1NJI J;  5H1S O;  4WCE J;  3CCL H;  3CCU H;  1YIT H;  1VQO H;  1Q81 J;  1M1K J;  1Y69 K;  1YJW H;  4IO9 J;  3J7Z M;  1YJN H;  2PA2 A;  3G4S H; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...