4U67W

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
total genus 11
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2014-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4u67W00
2ZJQW 1S72W 4WFBW 3CC4W 3CCVW 2ZJRW 1BXYA 1YITW 3G6EW 1YJNW 1K73X 1QVFV 3J7ZZ 1VQKW 5DM7W 5JVHW 3CC2W 3CC7W 1Q81X 1NJIX 1JJ2V 1M90X 5GAHa 3CPWV 4WFAW 1YJ9W 3CCUW 3OW2V 3CMAW 1N8RX 1KD1X 5HL7W 3CD6W 1Q7YX 4U67W 5GAGa 3G71W 3G4SW 1VQMW 3CCSW 5GAEa 3PIOW 1YJWW 3CCQW 1K9MX 4WCEW 1YI2W 3CCLW 1K8AX 1VQOW 4IO9W 2OTJW 1YIJW 3CXCV 1VQLW 2QA4W 3CF5W 3I56W 1M1KX 2ZJPW 1Q82X 1Q86X 5DM6W 3CCJW 3CCMW 1VQ4W 4IOAW 1VQ9W 4IOCW 3PIPW 1VQ7W 3I55W 4WFNW 1VQ6W 2QEXW 4UY8Z 1QVGV 1KC8X 1VQPW 4WF9W 1VQ5W 3CCEW 1KQSV 3DLLW 5GADa 1VQNW 1VQ8W 3CMEW 2OTLW 1W2BV 5JVGW 3CCRW 1YHQW
chains in the Genus database with same CATH superfamily
3GQ1A 2ZJQW 1S72W 4WFBW 3W7WA 3CC4W 3CCVW 2ZJRW 3ZG0A 1BXYA 1YITW 3G6EW 1YJNW 1K73X 1MBVB 1QVFV 3J7ZZ 1VQKW 5DM7W 1LZWA 5JVHW 3CC2W 3CC7W 1MWRA 3O2OA 1Q81X 1NJIX 5M19A 1JJ2V 1M90X 5GAHa 3CPWV 1MBXC 4WFAW 3O2BA 1YJ9W 3CCUW 3OW2V 3CMAW 1N8RX 1KD1X 5GW7A 5HL7W 3D3IA 4YJXA 3CD6W 1Q7YX 1DD4A 4U67W 3W7SA 5GAGa 3G71W 3G4SW 1VQMW 1VQQA 3CCSW 5GAEa 3O1FA 2W9RA 3O1FB 3G19A 3PIOW 1YJWW 3GW1A 1MBUC 3G1BA 3CCQW 4BL2A 1K9MX 4WCEW 1YI2W 3CCLW 1K8AX 1VQOW 4IO9W 3G3PA 2OTJW 1MWSA 2WA9A 1YIJW 1RQVA 3W7XA 3CXCV 1VQLW 2QA4W 3CF5W 3I56W 1M1KX 3DNJA 2ZJPW 1R6OC 1Q82X 1Q86X 5DM6W 3CCJW 3CCMW 1VQ4W 4IOAW 1VQ9W 4IOCW 3PIPW 1VQ7W 3I55W 5M1AA 4WFNW 1DD3A 1VQ6W 2QEXW 4UY8Z 3O2HA 3W7UA 1R6QC 3W7TA 1QVGV 4YKAA 1KC8X 1VQPW 2WA8A 4WF9W 1VQ5W 3CCEW 1KQSV 3ZFZA 3DLLW 4CPKA 5GADa 5CA3A 1VQNW 1VQ8W 3CMEW 3GQ0A 1RQUA 1MG9A 2OTLW 1CTFA 4BL3A 4CJNA 3ZG5A 1W2BV 1MWTA 4DKIA 4YJMA 5JVGW 5M18A 1MWUA 1RQSA 3CCRW 1YHQW
chains in the Genus database with same CATH topology
2ZJQW 1S72W 4WFBW 3CC4W 3CCVW 2ZJRW 1BXYA 1YITW 3G6EW 1YJNW 1K73X 1QVFV 3J7ZZ 1VQKW 5DM7W 5JVHW 3CC2W 3CC7W 1Q81X 1NJIX 1JJ2V 1M90X 5GAHa 3CPWV 4WFAW 1YJ9W 3CCUW 3OW2V 3CMAW 1N8RX 1KD1X 5HL7W 3CD6W 1Q7YX 4U67W 5GAGa 3G71W 3G4SW 1VQMW 3CCSW 5GAEa 3PIOW 1YJWW 3CCQW 1K9MX 4WCEW 1YI2W 3CCLW 1K8AX 1VQOW 4IO9W 2OTJW 1YIJW 3CXCV 1VQLW 2QA4W 3CF5W 3I56W 1M1KX 2ZJPW 1Q82X 1Q86X 5DM6W 3CCJW 3CCMW 1VQ4W 4IOAW 1VQ9W 4IOCW 3PIPW 1VQ7W 3I55W 4WFNW 1VQ6W 2QEXW 4UY8Z 1QVGV 1KC8X 1VQPW 4WF9W 1VQ5W 3CCEW 1KQSV 3DLLW 5GADa 1VQNW 1VQ8W 3CMEW 2OTLW 1W2BV 5JVGW 3CCRW 1YHQW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJQ W;  1S72 W;  4WFB W;  3CC4 W;  3CCV W;  2ZJR W;  1BXY A;  1YIT W;  3G6E W;  1YJN W;  1K73 X;  1QVF V;  3J7Z Z;  1VQK W;  5DM7 W;  5JVH W;  3CC2 W;  3CC7 W;  1Q81 X;  1NJI X;  1JJ2 V;  1M90 X;  5GAH a;  3CPW V;  4WFA W;  1YJ9 W;  3CCU W;  3OW2 V;  3CMA W;  1N8R X;  1KD1 X;  5HL7 W;  3CD6 W;  1Q7Y X;  4U67 W;  5GAG a;  3G71 W;  3G4S W;  1VQM W;  3CCS W;  5GAE a;  3PIO W;  1YJW W;  3CCQ W;  1K9M X;  4WCE W;  1YI2 W;  3CCL W;  1K8A X;  1VQO W;  4IO9 W;  2OTJ W;  1YIJ W;  3CXC V;  1VQL W;  2QA4 W;  3CF5 W;  3I56 W;  1M1K X;  2ZJP W;  1Q82 X;  1Q86 X;  5DM6 W;  3CCJ W;  3CCM W;  1VQ4 W;  4IOA W;  1VQ9 W;  4IOC W;  3PIP W;  1VQ7 W;  3I55 W;  4WFN W;  1VQ6 W;  2QEX W;  4UY8 Z;  1QVG V;  1KC8 X;  1VQP W;  4WF9 W;  1VQ5 W;  3CCE W;  1KQS V;  3DLL W;  5GAD a;  1VQN W;  1VQ8 W;  3CME W;  2OTL W;  1W2B V;  5JVG W;  3CCR W;  1YHQ W; 
#chains in the Genus database with same CATH topology
 3GQ1 A;  2ZJQ W;  1S72 W;  4WFB W;  3W7W A;  3CC4 W;  3CCV W;  2ZJR W;  3ZG0 A;  1BXY A;  1YIT W;  3G6E W;  1YJN W;  1K73 X;  1MBV B;  1QVF V;  3J7Z Z;  1VQK W;  5DM7 W;  1LZW A;  5JVH W;  3CC2 W;  3CC7 W;  1MWR A;  3O2O A;  1Q81 X;  1NJI X;  5M19 A;  1JJ2 V;  1M90 X;  5GAH a;  3CPW V;  1MBX C;  4WFA W;  3O2B A;  1YJ9 W;  3CCU W;  3OW2 V;  3CMA W;  1N8R X;  1KD1 X;  5GW7 A;  5HL7 W;  3D3I A;  4YJX A;  3CD6 W;  1Q7Y X;  1DD4 A;  4U67 W;  3W7S A;  5GAG a;  3G71 W;  3G4S W;  1VQM W;  1VQQ A;  3CCS W;  5GAE a;  3O1F A;  2W9R A;  3O1F B;  3G19 A;  3PIO W;  1YJW W;  3GW1 A;  1MBU C;  3G1B A;  3CCQ W;  4BL2 A;  1K9M X;  4WCE W;  1YI2 W;  3CCL W;  1K8A X;  1VQO W;  4IO9 W;  3G3P A;  2OTJ W;  1MWS A;  2WA9 A;  1YIJ W;  1RQV A;  3W7X A;  3CXC V;  1VQL W;  2QA4 W;  3CF5 W;  3I56 W;  1M1K X;  3DNJ A;  2ZJP W;  1R6O C;  1Q82 X;  1Q86 X;  5DM6 W;  3CCJ W;  3CCM W;  1VQ4 W;  4IOA W;  1VQ9 W;  4IOC W;  3PIP W;  1VQ7 W;  3I55 W;  5M1A A;  4WFN W;  1DD3 A;  1VQ6 W;  2QEX W;  4UY8 Z;  3O2H A;  3W7U A;  1R6Q C;  3W7T A;  1QVG V;  4YKA A;  1KC8 X;  1VQP W;  2WA8 A;  4WF9 W;  1VQ5 W;  3CCE W;  1KQS V;  3ZFZ A;  3DLL W;  4CPK A;  5GAD a;  5CA3 A;  1VQN W;  1VQ8 W;  3CME W;  3GQ0 A;  1RQU A;  1MG9 A;  2OTL W;  1CTF A;  4BL3 A;  4CJN A;  3ZG5 A;  1W2B V;  1MWT A;  4DKI A;  4YJM A;  5JVG W;  5M18 A;  1MWU A;  1RQS A;  3CCR W;  1YHQ W; 
#chains in the Genus database with same CATH homology
 2ZJQ W;  1S72 W;  4WFB W;  3CC4 W;  3CCV W;  2ZJR W;  1BXY A;  1YIT W;  3G6E W;  1YJN W;  1K73 X;  1QVF V;  3J7Z Z;  1VQK W;  5DM7 W;  5JVH W;  3CC2 W;  3CC7 W;  1Q81 X;  1NJI X;  1JJ2 V;  1M90 X;  5GAH a;  3CPW V;  4WFA W;  1YJ9 W;  3CCU W;  3OW2 V;  3CMA W;  1N8R X;  1KD1 X;  5HL7 W;  3CD6 W;  1Q7Y X;  4U67 W;  5GAG a;  3G71 W;  3G4S W;  1VQM W;  3CCS W;  5GAE a;  3PIO W;  1YJW W;  3CCQ W;  1K9M X;  4WCE W;  1YI2 W;  3CCL W;  1K8A X;  1VQO W;  4IO9 W;  2OTJ W;  1YIJ W;  3CXC V;  1VQL W;  2QA4 W;  3CF5 W;  3I56 W;  1M1K X;  2ZJP W;  1Q82 X;  1Q86 X;  5DM6 W;  3CCJ W;  3CCM W;  1VQ4 W;  4IOA W;  1VQ9 W;  4IOC W;  3PIP W;  1VQ7 W;  3I55 W;  4WFN W;  1VQ6 W;  2QEX W;  4UY8 Z;  1QVG V;  1KC8 X;  1VQP W;  4WF9 W;  1VQ5 W;  3CCE W;  1KQS V;  3DLL W;  5GAD a;  1VQN W;  1VQ8 W;  3CME W;  2OTL W;  1W2B V;  5JVG W;  3CCR W;  1YHQ W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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