4U6DA

Zg3615, a family 117 glycoside hydrolase in complex with beta-3,6-anhydro-l-galactose
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
382
structure length
382
Chain Sequence
EGFPFILPKEKPNRPLSAAMQRNYDNYMAPRPENNELYTQFKYTELKGFDYNGHDGTISRRDPSKVIYENGKYYVWYTYRNTPTPPQGAKNSNDTIPSADWDLAEIWYATSKDGFTWEEQGVAVPRPPKPNVGWRSVTTTDILKWKGKFYLYYQGFMEASGTRGDDCPVAVSYADSPDGPWTPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKIYLYYKSDFDGDPNLVRMQGLAIADNPLGPFKKSPLNPVINSGHETTLFPFKEGMAALVIRDGTEHNTVQYAEDGVNFNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHFTNATTWDQNHAVLARFDCDLSLDVDDPHMKRLGTYFKPEFYYQMGLSKKQRERI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Conserved hypothetical periplasmic protein
publication title Biochemical and structural investigation of two paralogous glycoside hydrolases from Zobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family.
pubmed doi rcsb
source organism Zobellia galactanivorans
total genus 92
structure length 382
sequence length 382
chains with identical sequence B
ec nomenclature ec 3.2.1.-:
pdb deposition date 2014-07-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4u6dA00
5AYCA 3QEEA 3D5YA 3AKIA 3KF5A 4UDKA 5B6TA 3QC2A 4UDJA 1UV4A 5A7VA 4U6DA 2AEYA 1PT2A 2X8TA 3WN2A 4N4BA 4FFFA 4COTA 3VT2A 5JOWA 5FIXA 3P2NA 5FKCA 4KMIA 3R4ZA 4O8NA 1YI7A 3AKFA 3OM6A 2B4WA 4UDIA 5B6SA 3QZ4A 5FMBA 3WASA 5GLQA 4PVIA 1GYDB 2XQRA 5JOXA 2YFRA 2X8FA 4PVAA 5FK7A 3WAUA 3LV4A 3R67A 4AK5A 2VDTA 4UDGA 3CU9A 3VSSA 3WPVA 2QQWA 3WPYA 3ZXKA 3BYJA 5AYEA 1VKDA 2YFSA 1OYGA 3UGFA 3PIGA 4ONZA 4FFGA 3D60A 3NQHA 3WMZA 2X8SA 4EQVA 4FFIA 3K1UA 5FKBA 2AEZA 3OM4A 3U14A 3LIHA 3VT1A 3WMYA 1YRZA 5A8DA 5FMDA 3WN1A 1W18A 4U6BA 2ADDA 4KC7A 4FFHA 5GLNA 3OM2A 3R4YA 5GLKA 1W2TA 3LDRA 5GLRA 4AK7A 3VSFA 3C7HA 1Y9MA 3PIJA 5JOYA 3KSTA 2QQVA 2EXIA 4KCBA 3C7FA 3D61A 4UDKE 3VSRA 3RWKX 1ST8A 4KC8A 1WL7A 4NOVA 3C7EA 3AKGA 5GLOA 3WN0A 1Y9GA 1GYEB 2ADEA 2EXJA 2YFTA 3D5ZA 2AC1A 3OM7A 2EXKA 1GYHA 2EXHA 3U75A 3BYKA 5FLWA 5AYDA 4AK6A 4N2RA 3KF3A 3BYNA 3C7GA 4D47A 3OM5A 1YIFA 3C2UA 5A7VB 5FMCA 3BYLA 4MLGA 5GLMA 1Y7BA 3LEMA 4QQSA 2QQUA 3LIGA 4KCAA 5FK8A 2OXBA 5C0PA 3WATA 3VSZA 1UYPA 1Y4WA 4N1IA 3TAWA 3AKHA 3LF7A 3WPUA 5AY9A 3UGHA 3LFIA 4O8OA 5ANNA 3ZXLA 3VT0A 5JOZA 3C7OA 3QEDA 5GLLA 5GLPA 4O8PA 5A8CA 3LDKA 3ZXJA 3WPZA 3QEFA 4N2ZA 3SC7X 3UGGA
chains in the Genus database with same CATH superfamily
5AYCA 3QEEA 3D5YA 3AKIA 3KF5A 4UDKA 5B6TA 3QC2A 4UDJA 1UV4A 5A7VA 4U6DA 2AEYA 1PT2A 2X8TA 3WN2A 4N4BA 4FFFA 4COTA 3VT2A 5JOWA 5FIXA 3P2NA 5FKCA 4KMIA 3R4ZA 4O8NA 1YI7A 3AKFA 3OM6A 2B4WA 4UDIA 5B6SA 3QZ4A 5FMBA 3WASA 5C2MA 5GLQA 4PVIA 1GYDB 2XQRA 5JOXA 2YFRA 2X8FA 4PVAA 5FK7A 3WAUA 3LV4A 3R67A 4AK5A 2VDTA 4UDGA 3CU9A 3VSSA 3WPVA 2QQWA 3WPYA 3ZXKA 3BYJA 5AYEA 1VKDA 2YFSA 1OYGA 3UGFA 3PIGA 4ONZA 4FFGA 3D60A 3NQHA 3WMZA 2X8SA 4EQVA 4FFIA 3K1UA 5FKBA 2AEZA 3OM4A 3U14A 3LIHA 3VT1A 3WMYA 1YRZA 5A8DA 5FMDA 3WN1A 1W18A 4U6BA 2ADDA 4KC7A 4FFHA 5GLNA 3OM2A 3R4YA 5GLKA 1W2TA 3LDRA 5GLRA 4AK7A 3VSFA 3C7HA 1Y9MA 3PIJA 5JOYA 3KSTA 2QQVA 2EXIA 4KCBA 3C7FA 3D61A 4UDKE 3VSRA 3RWKX 1ST8A 4KC8A 1WL7A 4NOVA 3C7EA 3AKGA 5GLOA 3WN0A 1Y9GA 1GYEB 2ADEA 2EXJA 2YFTA 3D5ZA 2AC1A 3OM7A 2EXKA 1GYHA 2EXHA 3U75A 3BYKA 5FLWA 5AYDA 4AK6A 1TL2A 4N2RA 3KF3A 3BYNA 3C7GA 4D47A 3OM5A 1YIFA 3C2UA 5A7VB 5FMCA 3BYLA 4MLGA 5GLMA 1Y7BA 3LEMA 4QQSA 2QQUA 3LIGA 4KCAA 5FK8A 2OXBA 5C0PA 3WATA 3VSZA 1UYPA 1Y4WA 4N1IA 3TAWA 3AKHA 3LF7A 3WPUA 5AY9A 3UGHA 3LFIA 4O8OA 5ANNA 3ZXLA 3VT0A 5JOZA 3C7OA 3QEDA 5GLLA 5GLPA 4O8PA 5A8CA 3LDKA 3ZXJA 3WPZA 3QEFA 4N2ZA 3SC7X 3UGGA
chains in the Genus database with same CATH topology
5AYCA 3QEEA 3D5YA 3AKIA 3KF5A 4UDKA 5B6TA 3QC2A 4UDJA 1UV4A 5A7VA 4U6DA 2AEYA 1PT2A 2X8TA 3WN2A 4N4BA 4FFFA 4COTA 3VT2A 5JOWA 5FIXA 3P2NA 5FKCA 4KMIA 3R4ZA 4O8NA 1YI7A 3AKFA 3OM6A 2B4WA 4UDIA 5B6SA 3QZ4A 5FMBA 3WASA 5GLQA 4PVIA 1GYDB 2XQRA 5JOXA 2YFRA 2X8FA 4PVAA 5FK7A 3WAUA 3LV4A 3R67A 4AK5A 2VDTA 4UDGA 3CU9A 3VSSA 3WPVA 2QQWA 3WPYA 3ZXKA 3BYJA 5AYEA 1VKDA 2YFSA 1OYGA 3UGFA 3PIGA 4ONZA 4FFGA 3D60A 3NQHA 3WMZA 2X8SA 4EQVA 4FFIA 3K1UA 5FKBA 2AEZA 3OM4A 3U14A 3LIHA 3VT1A 3WMYA 1YRZA 5A8DA 5FMDA 3WN1A 1W18A 4U6BA 2ADDA 4KC7A 4FFHA 5GLNA 3OM2A 3R4YA 5GLKA 1W2TA 3LDRA 5GLRA 4AK7A 3VSFA 3C7HA 1Y9MA 3PIJA 5JOYA 3KSTA 2QQVA 2EXIA 4KCBA 3C7FA 3D61A 4UDKE 3VSRA 3RWKX 1ST8A 4KC8A 1WL7A 4NOVA 3C7EA 3AKGA 5GLOA 3WN0A 1Y9GA 1GYEB 2ADEA 2EXJA 2YFTA 3D5ZA 2AC1A 3OM7A 2EXKA 1GYHA 2EXHA 3U75A 3BYKA 5FLWA 5AYDA 4AK6A 4N2RA 3KF3A 3BYNA 3C7GA 4D47A 3OM5A 1YIFA 3C2UA 5A7VB 5FMCA 3BYLA 4MLGA 5GLMA 1Y7BA 3LEMA 4QQSA 2QQUA 3LIGA 4KCAA 5FK8A 2OXBA 5C0PA 3WATA 3VSZA 1UYPA 1Y4WA 4N1IA 3TAWA 3AKHA 3LF7A 3WPUA 5AY9A 3UGHA 3LFIA 4O8OA 5ANNA 3ZXLA 3VT0A 5JOZA 3C7OA 3QEDA 5GLLA 5GLPA 4O8PA 5A8CA 3LDKA 3ZXJA 3WPZA 3QEFA 4N2ZA 3SC7X 3UGGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AYC A;  3QEE A;  3D5Y A;  3AKI A;  3KF5 A;  4UDK A;  5B6T A;  3QC2 A;  4UDJ A;  1UV4 A;  5A7V A;  4U6D A;  2AEY A;  1PT2 A;  2X8T A;  3WN2 A;  4N4B A;  4FFF A;  4COT A;  3VT2 A;  5JOW A;  5FIX A;  3P2N A;  5FKC A;  4KMI A;  3R4Z A;  4O8N A;  1YI7 A;  3AKF A;  3OM6 A;  2B4W A;  4UDI A;  5B6S A;  3QZ4 A;  5FMB A;  3WAS A;  5GLQ A;  4PVI A;  1GYD B;  2XQR A;  5JOX A;  2YFR A;  2X8F A;  4PVA A;  5FK7 A;  3WAU A;  3LV4 A;  3R67 A;  4AK5 A;  2VDT A;  4UDG A;  3CU9 A;  3VSS A;  3WPV A;  2QQW A;  3WPY A;  3ZXK A;  3BYJ A;  5AYE A;  1VKD A;  2YFS A;  1OYG A;  3UGF A;  3PIG A;  4ONZ A;  4FFG A;  3D60 A;  3NQH A;  3WMZ A;  2X8S A;  4EQV A;  4FFI A;  3K1U A;  5FKB A;  2AEZ A;  3OM4 A;  3U14 A;  3LIH A;  3VT1 A;  3WMY A;  1YRZ A;  5A8D A;  5FMD A;  3WN1 A;  1W18 A;  4U6B A;  2ADD A;  4KC7 A;  4FFH A;  5GLN A;  3OM2 A;  3R4Y A;  5GLK A;  1W2T A;  3LDR A;  5GLR A;  4AK7 A;  3VSF A;  3C7H A;  1Y9M A;  3PIJ A;  5JOY A;  3KST A;  2QQV A;  2EXI A;  4KCB A;  3C7F A;  3D61 A;  4UDK E;  3VSR A;  3RWK X;  1ST8 A;  4KC8 A;  1WL7 A;  4NOV A;  3C7E A;  3AKG A;  5GLO A;  3WN0 A;  1Y9G A;  1GYE B;  2ADE A;  2EXJ A;  2YFT A;  3D5Z A;  2AC1 A;  3OM7 A;  2EXK A;  1GYH A;  2EXH A;  3U75 A;  3BYK A;  5FLW A;  5AYD A;  4AK6 A;  4N2R A;  3KF3 A;  3BYN A;  3C7G A;  4D47 A;  3OM5 A;  1YIF A;  3C2U A;  5A7V B;  5FMC A;  3BYL A;  4MLG A;  5GLM A;  1Y7B A;  3LEM A;  4QQS A;  2QQU A;  3LIG A;  4KCA A;  5FK8 A;  2OXB A;  5C0P A;  3WAT A;  3VSZ A;  1UYP A;  1Y4W A;  4N1I A;  3TAW A;  3AKH A;  3LF7 A;  3WPU A;  5AY9 A;  3UGH A;  3LFI A;  4O8O A;  5ANN A;  3ZXL A;  3VT0 A;  5JOZ A;  3C7O A;  3QED A;  5GLL A;  5GLP A;  4O8P A;  5A8C A;  3LDK A;  3ZXJ A;  3WPZ A;  3QEF A;  4N2Z A;  3SC7 X;  3UGG A; 
#chains in the Genus database with same CATH topology
 5AYC A;  3QEE A;  3D5Y A;  3AKI A;  3KF5 A;  4UDK A;  5B6T A;  3QC2 A;  4UDJ A;  1UV4 A;  5A7V A;  4U6D A;  2AEY A;  1PT2 A;  2X8T A;  3WN2 A;  4N4B A;  4FFF A;  4COT A;  3VT2 A;  5JOW A;  5FIX A;  3P2N A;  5FKC A;  4KMI A;  3R4Z A;  4O8N A;  1YI7 A;  3AKF A;  3OM6 A;  2B4W A;  4UDI A;  5B6S A;  3QZ4 A;  5FMB A;  3WAS A;  5C2M A;  5GLQ A;  4PVI A;  1GYD B;  2XQR A;  5JOX A;  2YFR A;  2X8F A;  4PVA A;  5FK7 A;  3WAU A;  3LV4 A;  3R67 A;  4AK5 A;  2VDT A;  4UDG A;  3CU9 A;  3VSS A;  3WPV A;  2QQW A;  3WPY A;  3ZXK A;  3BYJ A;  5AYE A;  1VKD A;  2YFS A;  1OYG A;  3UGF A;  3PIG A;  4ONZ A;  4FFG A;  3D60 A;  3NQH A;  3WMZ A;  2X8S A;  4EQV A;  4FFI A;  3K1U A;  5FKB A;  2AEZ A;  3OM4 A;  3U14 A;  3LIH A;  3VT1 A;  3WMY A;  1YRZ A;  5A8D A;  5FMD A;  3WN1 A;  1W18 A;  4U6B A;  2ADD A;  4KC7 A;  4FFH A;  5GLN A;  3OM2 A;  3R4Y A;  5GLK A;  1W2T A;  3LDR A;  5GLR A;  4AK7 A;  3VSF A;  3C7H A;  1Y9M A;  3PIJ A;  5JOY A;  3KST A;  2QQV A;  2EXI A;  4KCB A;  3C7F A;  3D61 A;  4UDK E;  3VSR A;  3RWK X;  1ST8 A;  4KC8 A;  1WL7 A;  4NOV A;  3C7E A;  3AKG A;  5GLO A;  3WN0 A;  1Y9G A;  1GYE B;  2ADE A;  2EXJ A;  2YFT A;  3D5Z A;  2AC1 A;  3OM7 A;  2EXK A;  1GYH A;  2EXH A;  3U75 A;  3BYK A;  5FLW A;  5AYD A;  4AK6 A;  1TL2 A;  4N2R A;  3KF3 A;  3BYN A;  3C7G A;  4D47 A;  3OM5 A;  1YIF A;  3C2U A;  5A7V B;  5FMC A;  3BYL A;  4MLG A;  5GLM A;  1Y7B A;  3LEM A;  4QQS A;  2QQU A;  3LIG A;  4KCA A;  5FK8 A;  2OXB A;  5C0P A;  3WAT A;  3VSZ A;  1UYP A;  1Y4W A;  4N1I A;  3TAW A;  3AKH A;  3LF7 A;  3WPU A;  5AY9 A;  3UGH A;  3LFI A;  4O8O A;  5ANN A;  3ZXL A;  3VT0 A;  5JOZ A;  3C7O A;  3QED A;  5GLL A;  5GLP A;  4O8P A;  5A8C A;  3LDK A;  3ZXJ A;  3WPZ A;  3QEF A;  4N2Z A;  3SC7 X;  3UGG A; 
#chains in the Genus database with same CATH homology
 5AYC A;  3QEE A;  3D5Y A;  3AKI A;  3KF5 A;  4UDK A;  5B6T A;  3QC2 A;  4UDJ A;  1UV4 A;  5A7V A;  4U6D A;  2AEY A;  1PT2 A;  2X8T A;  3WN2 A;  4N4B A;  4FFF A;  4COT A;  3VT2 A;  5JOW A;  5FIX A;  3P2N A;  5FKC A;  4KMI A;  3R4Z A;  4O8N A;  1YI7 A;  3AKF A;  3OM6 A;  2B4W A;  4UDI A;  5B6S A;  3QZ4 A;  5FMB A;  3WAS A;  5GLQ A;  4PVI A;  1GYD B;  2XQR A;  5JOX A;  2YFR A;  2X8F A;  4PVA A;  5FK7 A;  3WAU A;  3LV4 A;  3R67 A;  4AK5 A;  2VDT A;  4UDG A;  3CU9 A;  3VSS A;  3WPV A;  2QQW A;  3WPY A;  3ZXK A;  3BYJ A;  5AYE A;  1VKD A;  2YFS A;  1OYG A;  3UGF A;  3PIG A;  4ONZ A;  4FFG A;  3D60 A;  3NQH A;  3WMZ A;  2X8S A;  4EQV A;  4FFI A;  3K1U A;  5FKB A;  2AEZ A;  3OM4 A;  3U14 A;  3LIH A;  3VT1 A;  3WMY A;  1YRZ A;  5A8D A;  5FMD A;  3WN1 A;  1W18 A;  4U6B A;  2ADD A;  4KC7 A;  4FFH A;  5GLN A;  3OM2 A;  3R4Y A;  5GLK A;  1W2T A;  3LDR A;  5GLR A;  4AK7 A;  3VSF A;  3C7H A;  1Y9M A;  3PIJ A;  5JOY A;  3KST A;  2QQV A;  2EXI A;  4KCB A;  3C7F A;  3D61 A;  4UDK E;  3VSR A;  3RWK X;  1ST8 A;  4KC8 A;  1WL7 A;  4NOV A;  3C7E A;  3AKG A;  5GLO A;  3WN0 A;  1Y9G A;  1GYE B;  2ADE A;  2EXJ A;  2YFT A;  3D5Z A;  2AC1 A;  3OM7 A;  2EXK A;  1GYH A;  2EXH A;  3U75 A;  3BYK A;  5FLW A;  5AYD A;  4AK6 A;  4N2R A;  3KF3 A;  3BYN A;  3C7G A;  4D47 A;  3OM5 A;  1YIF A;  3C2U A;  5A7V B;  5FMC A;  3BYL A;  4MLG A;  5GLM A;  1Y7B A;  3LEM A;  4QQS A;  2QQU A;  3LIG A;  4KCA A;  5FK8 A;  2OXB A;  5C0P A;  3WAT A;  3VSZ A;  1UYP A;  1Y4W A;  4N1I A;  3TAW A;  3AKH A;  3LF7 A;  3WPU A;  5AY9 A;  3UGH A;  3LFI A;  4O8O A;  5ANN A;  3ZXL A;  3VT0 A;  5JOZ A;  3C7O A;  3QED A;  5GLL A;  5GLP A;  4O8P A;  5A8C A;  3LDK A;  3ZXJ A;  3WPZ A;  3QEF A;  4N2Z A;  3SC7 X;  3UGG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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