4U90A

Gephe in complex with peg crosslinked gaba receptor alpha3 subunit derived dimeric peptide
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
418
structure length
411
Chain Sequence
SPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transfer protein / structural protein
molecule keywords Gephyrin
publication title Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 108
structure length 411
sequence length 418
ec nomenclature ec 2.10.1.1: Molybdopterin molybdotransferase.
pdb deposition date 2014-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
A PF03453 MoeA_N MoeA N-terminal region (domain I and II)
A PF03454 MoeA_C MoeA C-terminal region (domain IV)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.340.10 Mainly Beta Beta Barrel Beta-clip MoeA, C-terminal, domain IV 4u90A04
2.170.190.11 Mainly Beta Beta Complex Molybdopterin biosynthesis moeA protein; domain 3 Molybdopterin biosynthesis moea protein, domain 3. 4u90A03
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 4u90A01
3.90.105.10 Alpha Beta Alpha-Beta Complex Molybdopterin biosynthesis moea protein, domain 2 Molybdopterin biosynthesis moea protein, domain 2 4u90A02
4CTAA 3PZYA 4XCWA 2NQRA 2G4RA 1O8OA 4LHBA 2F7YA 4PD0A 2NRPA 2NQVA 2F7WA 4U91A 5ERTA 2NQSA 2NQQA 1G8LA 4CT8A 2FTSA 3KBQA 4UOCA 1Y5EA 1EAVA 1WU2A 3RFQA 4UUWA 2G2CA 2NQNA 5ERVA 4CTAB 1G8RA 5G2SA 1DI6A 3IWTA 5ERSA 1UUXA 1JLJA 1T3EA 3TCRA 1DI7A 5ERQA 4TWGA 2FU3A 2QQ1A 2NQKA 3MCIA 4U90A 2NROA 4CT9A 3MCHA 1XI8A 1O8QA 1O8NA 1UUYA 2NQMA 1R2KA 5G2RA 1IHCA 1MKZA 2NQUA 5ERRA 2NRSA 4UUXA 3OI9A 2X3LA 4NWOA 4TK1A 4TK3A 2PBQA 4PD1A 1FC5A 5ERUA 3K6AA 3MCJA 1UZ5A 4TK4A 2IS8A
chains in the Genus database with same CATH superfamily
3JSYA 3DQQA 4CTAA 3PZYA 4XCWA 5DMHA 2NQRA 2G4RA 1O8OA 4LHBA 2F7YA 4PD0A 2NRPA 1IW7D 2NQVA 2F7WA 4U91A 5ERTA 2NQSA 2NQQA 1G8LA 4CT8A 2FTSA 3KBQA 4UOCA 1HQMD 1Y5EA 1EAVA 1WU2A 3RFQA 4UUWA 2G2CA 2NQNA 5ERVA 4CTAB 1G8RA 5G2SA 1DI6A 3IWTA 5ERSA 1UUXA 1JLJA 1T3EA 3TCRA 1DI7A 5ERQA 4TWGA 2FU3A 2QQ1A 2NQKA 3MCIA 4U90A 2NROA 1YZYA 1I6VD 4CT9A 3MCHA 1XI8A 1O8QA 1O8NA 1UUYA 2NQMA 1R2KA 5G2RA 1IHCA 1MKZA 2NQUA 5D8HB 5ERRA 2NRSA 4UUXA 3OI9A 2X3LA 4NWOA 5D6GA 4TK1A 4TK3A 2PBQA 4PD1A 1FC5A 5ERUA 3K6AA 3MCJA 1UZ5A 4TK4A 2IS8A 4NWBA
chains in the Genus database with same CATH topology
3JSYA 4CTAA 3PZYA 4XCWA 2NQRA 2G4RA 1O8OA 4LHBA 2F7YA 4PD0A 2NRPA 1IW7D 2NQVA 2F7WA 4U91A 5ERTA 2NQSA 2NQQA 1G8LA 4CT8A 2FTSA 3KBQA 4UOCA 1HQMD 1Y5EA 1EAVA 1WU2A 3RFQA 4UUWA 2G2CA 2NQNA 5ERVA 4CTAB 1G8RA 5G2SA 1DI6A 3IWTA 5ERSA 1UUXA 1JLJA 1T3EA 3TCRA 1DI7A 5ERQA 4TWGA 2FU3A 2QQ1A 2NQKA 3MCIA 4U90A 2NROA 1I6VD 4CT9A 3MCHA 1XI8A 1O8QA 1O8NA 1UUYA 2NQMA 1R2KA 5G2RA 1IHCA 1MKZA 2NQUA 5D8HB 5ERRA 2NRSA 4UUXA 3OI9A 2X3LA 4NWOA 5D6GA 4TK1A 4TK3A 2PBQA 4PD1A 1FC5A 5ERUA 3K6AA 3MCJA 1UZ5A 4TK4A 2IS8A 4NWBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CTA A;  3PZY A;  4XCW A;  2NQR A;  2G4R A;  1O8O A;  4LHB A;  2F7Y A;  4PD0 A;  2NRP A;  2NQV A;  2F7W A;  4U91 A;  5ERT A;  2NQS A;  2NQQ A;  1G8L A;  4CT8 A;  2FTS A;  3KBQ A;  4UOC A;  1Y5E A;  1EAV A;  1WU2 A;  3RFQ A;  4UUW A;  2G2C A;  2NQN A;  5ERV A;  4CTA B;  1G8R A;  5G2S A;  1DI6 A;  3IWT A;  5ERS A;  1UUX A;  1JLJ A;  1T3E A;  3TCR A;  1DI7 A;  5ERQ A;  4TWG A;  2FU3 A;  2QQ1 A;  2NQK A;  3MCI A;  4U90 A;  2NRO A;  4CT9 A;  3MCH A;  1XI8 A;  1O8Q A;  1O8N A;  1UUY A;  2NQM A;  1R2K A;  5G2R A;  1IHC A;  1MKZ A;  2NQU A;  5ERR A;  2NRS A;  4UUX A;  3OI9 A;  2X3L A;  4NWO A;  4TK1 A;  4TK3 A;  2PBQ A;  4PD1 A;  1FC5 A;  5ERU A;  3K6A A;  3MCJ A;  1UZ5 A;  4TK4 A;  2IS8 A; 
#chains in the Genus database with same CATH topology
 3JSY A;  3DQQ A;  4CTA A;  3PZY A;  4XCW A;  5DMH A;  2NQR A;  2G4R A;  1O8O A;  4LHB A;  2F7Y A;  4PD0 A;  2NRP A;  1IW7 D;  2NQV A;  2F7W A;  4U91 A;  5ERT A;  2NQS A;  2NQQ A;  1G8L A;  4CT8 A;  2FTS A;  3KBQ A;  4UOC A;  1HQM D;  1Y5E A;  1EAV A;  1WU2 A;  3RFQ A;  4UUW A;  2G2C A;  2NQN A;  5ERV A;  4CTA B;  1G8R A;  5G2S A;  1DI6 A;  3IWT A;  5ERS A;  1UUX A;  1JLJ A;  1T3E A;  3TCR A;  1DI7 A;  5ERQ A;  4TWG A;  2FU3 A;  2QQ1 A;  2NQK A;  3MCI A;  4U90 A;  2NRO A;  1YZY A;  1I6V D;  4CT9 A;  3MCH A;  1XI8 A;  1O8Q A;  1O8N A;  1UUY A;  2NQM A;  1R2K A;  5G2R A;  1IHC A;  1MKZ A;  2NQU A;  5D8H B;  5ERR A;  2NRS A;  4UUX A;  3OI9 A;  2X3L A;  4NWO A;  5D6G A;  4TK1 A;  4TK3 A;  2PBQ A;  4PD1 A;  1FC5 A;  5ERU A;  3K6A A;  3MCJ A;  1UZ5 A;  4TK4 A;  2IS8 A;  4NWB A; 
#chains in the Genus database with same CATH homology
 3JSY A;  4CTA A;  3PZY A;  4XCW A;  2NQR A;  2G4R A;  1O8O A;  4LHB A;  2F7Y A;  4PD0 A;  2NRP A;  1IW7 D;  2NQV A;  2F7W A;  4U91 A;  5ERT A;  2NQS A;  2NQQ A;  1G8L A;  4CT8 A;  2FTS A;  3KBQ A;  4UOC A;  1HQM D;  1Y5E A;  1EAV A;  1WU2 A;  3RFQ A;  4UUW A;  2G2C A;  2NQN A;  5ERV A;  4CTA B;  1G8R A;  5G2S A;  1DI6 A;  3IWT A;  5ERS A;  1UUX A;  1JLJ A;  1T3E A;  3TCR A;  1DI7 A;  5ERQ A;  4TWG A;  2FU3 A;  2QQ1 A;  2NQK A;  3MCI A;  4U90 A;  2NRO A;  1I6V D;  4CT9 A;  3MCH A;  1XI8 A;  1O8Q A;  1O8N A;  1UUY A;  2NQM A;  1R2K A;  5G2R A;  1IHC A;  1MKZ A;  2NQU A;  5D8H B;  5ERR A;  2NRS A;  4UUX A;  3OI9 A;  2X3L A;  4NWO A;  5D6G A;  4TK1 A;  4TK3 A;  2PBQ A;  4PD1 A;  1FC5 A;  5ERU A;  3K6A A;  3MCJ A;  1UZ5 A;  4TK4 A;  2IS8 A;  4NWB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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