4U91A

Gephe in complex with para-phenyl crosslinked glycine receptor beta subunit derived dimeric peptide
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
418
structure length
415
Chain Sequence
SPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transfer protein / structural protein
molecule keywords Gephyrin
publication title Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 106
structure length 415
sequence length 418
ec nomenclature ec 2.10.1.1: Molybdopterin molybdotransferase.
pdb deposition date 2014-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
A PF03453 MoeA_N MoeA N-terminal region (domain I and II)
A PF03454 MoeA_C MoeA C-terminal region (domain IV)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.340.10 Mainly Beta Beta Barrel Beta-clip MoeA, C-terminal, domain IV 4u91A04
2.170.190.11 Mainly Beta Beta Complex Molybdopterin biosynthesis moeA protein; domain 3 Molybdopterin biosynthesis moea protein, domain 3. 4u91A03
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 4u91A01
3.90.105.10 Alpha Beta Alpha-Beta Complex Molybdopterin biosynthesis moea protein, domain 2 Molybdopterin biosynthesis moea protein, domain 2 4u91A02
1O8NA 4PD1A 4UUXA 5ERRA 2QQ1A 1O8OA 3OI9A 4TK4A 4CT8A 2NQVA 2NQQA 2X3LA 2NROA 4TK1A 2NQRA 1FC5A 4UOCA 2NQNA 1DI6A 4LHBA 2NRSA 4NWOA 5ERTA 3IWTA 2G2CA 2NRPA 3MCIA 5G2RA 1MKZA 4XCWA 2F7YA 1UUYA 3PZYA 4CTAB 4U91A 4UUWA 2PBQA 2IS8A 1Y5EA 1EAVA 4U90A 4CT9A 5ERVA 1UUXA 1XI8A 1IHCA 4TK3A 3RFQA 1G8RA 4TWGA 1G8LA 2NQUA 4PD0A 1O8QA 5ERSA 3TCRA 5G2SA 5ERUA 2NQMA 5ERQA 1WU2A 4CTAA 2G4RA 1R2KA 3KBQA 1UZ5A 2NQKA 2FTSA 3MCHA 2F7WA 1JLJA 1DI7A 3MCJA 2NQSA 3K6AA 1T3EA 2FU3A
chains in the Genus database with same CATH superfamily
1O8NA 4PD1A 4UUXA 5ERRA 2QQ1A 1O8OA 3OI9A 4TK4A 4CT8A 2NQVA 2NQQA 2X3LA 2NROA 4TK1A 3DQQA 2NQRA 1FC5A 4UOCA 2NQNA 1DI6A 4LHBA 2NRSA 4NWOA 5ERTA 3IWTA 2G2CA 2NRPA 3MCIA 1HQMD 5G2RA 1MKZA 4XCWA 2F7YA 1UUYA 3PZYA 4CTAB 4U91A 1IW7D 4UUWA 1I6VD 2PBQA 2IS8A 1Y5EA 1EAVA 4U90A 4CT9A 5ERVA 1UUXA 5D6GA 1XI8A 1IHCA 4TK3A 3RFQA 1G8RA 4TWGA 1G8LA 2NQUA 4PD0A 1O8QA 5ERSA 3JSYA 3TCRA 5G2SA 5ERUA 1YZYA 4NWBA 2NQMA 5ERQA 1WU2A 4CTAA 2G4RA 1R2KA 3KBQA 1UZ5A 2NQKA 2FTSA 3MCHA 2F7WA 1JLJA 1DI7A 5DMHA 3MCJA 2NQSA 3K6AA 1T3EA 2FU3A 5D8HB
chains in the Genus database with same CATH topology
1O8NA 4PD1A 4UUXA 5ERRA 2QQ1A 1O8OA 3OI9A 4TK4A 4CT8A 2NQVA 2NQQA 2X3LA 2NROA 4TK1A 2NQRA 1FC5A 4UOCA 2NQNA 1DI6A 4LHBA 2NRSA 4NWOA 5ERTA 3IWTA 2G2CA 2NRPA 3MCIA 1HQMD 5G2RA 1MKZA 4XCWA 2F7YA 1UUYA 3PZYA 4CTAB 4U91A 1IW7D 4UUWA 1I6VD 2PBQA 2IS8A 1Y5EA 1EAVA 4U90A 4CT9A 5ERVA 1UUXA 5D6GA 1XI8A 1IHCA 4TK3A 3RFQA 1G8RA 4TWGA 1G8LA 2NQUA 4PD0A 1O8QA 5ERSA 3JSYA 3TCRA 5G2SA 5ERUA 4NWBA 2NQMA 5ERQA 1WU2A 4CTAA 2G4RA 1R2KA 3KBQA 1UZ5A 2NQKA 2FTSA 3MCHA 2F7WA 1JLJA 1DI7A 3MCJA 2NQSA 3K6AA 1T3EA 2FU3A 5D8HB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8N A;  4PD1 A;  4UUX A;  5ERR A;  2QQ1 A;  1O8O A;  3OI9 A;  4TK4 A;  4CT8 A;  2NQV A;  2NQQ A;  2X3L A;  2NRO A;  4TK1 A;  2NQR A;  1FC5 A;  4UOC A;  2NQN A;  1DI6 A;  4LHB A;  2NRS A;  4NWO A;  5ERT A;  3IWT A;  2G2C A;  2NRP A;  3MCI A;  5G2R A;  1MKZ A;  4XCW A;  2F7Y A;  1UUY A;  3PZY A;  4CTA B;  4U91 A;  4UUW A;  2PBQ A;  2IS8 A;  1Y5E A;  1EAV A;  4U90 A;  4CT9 A;  5ERV A;  1UUX A;  1XI8 A;  1IHC A;  4TK3 A;  3RFQ A;  1G8R A;  4TWG A;  1G8L A;  2NQU A;  4PD0 A;  1O8Q A;  5ERS A;  3TCR A;  5G2S A;  5ERU A;  2NQM A;  5ERQ A;  1WU2 A;  4CTA A;  2G4R A;  1R2K A;  3KBQ A;  1UZ5 A;  2NQK A;  2FTS A;  3MCH A;  2F7W A;  1JLJ A;  1DI7 A;  3MCJ A;  2NQS A;  3K6A A;  1T3E A;  2FU3 A; 
#chains in the Genus database with same CATH topology
 1O8N A;  4PD1 A;  4UUX A;  5ERR A;  2QQ1 A;  1O8O A;  3OI9 A;  4TK4 A;  4CT8 A;  2NQV A;  2NQQ A;  2X3L A;  2NRO A;  4TK1 A;  3DQQ A;  2NQR A;  1FC5 A;  4UOC A;  2NQN A;  1DI6 A;  4LHB A;  2NRS A;  4NWO A;  5ERT A;  3IWT A;  2G2C A;  2NRP A;  3MCI A;  1HQM D;  5G2R A;  1MKZ A;  4XCW A;  2F7Y A;  1UUY A;  3PZY A;  4CTA B;  4U91 A;  1IW7 D;  4UUW A;  1I6V D;  2PBQ A;  2IS8 A;  1Y5E A;  1EAV A;  4U90 A;  4CT9 A;  5ERV A;  1UUX A;  5D6G A;  1XI8 A;  1IHC A;  4TK3 A;  3RFQ A;  1G8R A;  4TWG A;  1G8L A;  2NQU A;  4PD0 A;  1O8Q A;  5ERS A;  3JSY A;  3TCR A;  5G2S A;  5ERU A;  1YZY A;  4NWB A;  2NQM A;  5ERQ A;  1WU2 A;  4CTA A;  2G4R A;  1R2K A;  3KBQ A;  1UZ5 A;  2NQK A;  2FTS A;  3MCH A;  2F7W A;  1JLJ A;  1DI7 A;  5DMH A;  3MCJ A;  2NQS A;  3K6A A;  1T3E A;  2FU3 A;  5D8H B; 
#chains in the Genus database with same CATH homology
 1O8N A;  4PD1 A;  4UUX A;  5ERR A;  2QQ1 A;  1O8O A;  3OI9 A;  4TK4 A;  4CT8 A;  2NQV A;  2NQQ A;  2X3L A;  2NRO A;  4TK1 A;  2NQR A;  1FC5 A;  4UOC A;  2NQN A;  1DI6 A;  4LHB A;  2NRS A;  4NWO A;  5ERT A;  3IWT A;  2G2C A;  2NRP A;  3MCI A;  1HQM D;  5G2R A;  1MKZ A;  4XCW A;  2F7Y A;  1UUY A;  3PZY A;  4CTA B;  4U91 A;  1IW7 D;  4UUW A;  1I6V D;  2PBQ A;  2IS8 A;  1Y5E A;  1EAV A;  4U90 A;  4CT9 A;  5ERV A;  1UUX A;  5D6G A;  1XI8 A;  1IHC A;  4TK3 A;  3RFQ A;  1G8R A;  4TWG A;  1G8L A;  2NQU A;  4PD0 A;  1O8Q A;  5ERS A;  3JSY A;  3TCR A;  5G2S A;  5ERU A;  4NWB A;  2NQM A;  5ERQ A;  1WU2 A;  4CTA A;  2G4R A;  1R2K A;  3KBQ A;  1UZ5 A;  2NQK A;  2FTS A;  3MCH A;  2F7W A;  1JLJ A;  1DI7 A;  3MCJ A;  2NQS A;  3K6A A;  1T3E A;  2FU3 A;  5D8H B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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