4UAOA

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi in complex with an invasion inhibitory antibody
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
336
structure length
332
Chain Sequence
b'MSNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNADDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDSQNKDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEETDYEKIQEGFRQNNRDMIKSAFLPVGASDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Apical merozoite antigen 1
publication title Crystal Structure of Plasmodium knowlesi Apical Membrane Antigen 1 and Its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
source organism Plasmodium knowlesi
molecule tags Cell invasion
total genus 91
structure length 332
sequence length 336
ec nomenclature
pdb deposition date 2014-08-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uaoA01
2HGFA 2J8LA 2YILA 5CS9A 1I8NA 3ZWZA 2X2ZA 4R1CA 5I25A 4R1BA 5CSQA 5CS3A 1Z40A 1NK1A 2YIOA 3HN4A 2QJ2A 4IUAA 2Q8AA 2Z8VA 1GMNA 2J8JA 2Y8RA 2YIPA 2Z8WA 4R1AA 3SRIA 1BHTA 4Z0DA 4APLA 5CT2A 1YXEA 5EODA 2LL4M 1W8KA 3HMTA 3HMRA 1GMOA 3HMSA 1W81A 4Z09A 5CT1A 2K13X 2QJ4A 3SRJA 4Z0EA 4UV6A 4APMA 4A5TS 4Z0FA 5COEA 3ZLEA 5CP9A 5CS1A 2Q8BA 5CS5A 2LL3A 4DURA 1GP9A 5EOKA 5CT3A 1HKYA 2F83A 3SP8A 3MKPA 4R19A 4UAOA
chains in the Genus database with same CATH superfamily
2HGFA 2J8LA 2YILA 5CS9A 1I8NA 4YIZA 2X2ZA 4R1CA 3ZWZA 4R1BA 5CSQA 5CS3A 5I25A 1Z40A 1NK1A 2YIOA 3HN4A 2QJ2A 4IUAA 4YIVA 2Q8AA 2KL5A 1GMNA 2J8JA 2Y8RA 2YIPA 2Z8WA 2Z8VA 4R1AA 3SRIA 1BHTA 4Z0DA 4APLA 5CT2A 1YXEA 5EODA 2LL4M 1W8KA 3HMTA 3HMRA 1GMOA 3HMSA 1W81A 4Z09A 5CT1A 2K13X 2QJ4A 3SRJA 4Z0EA 4UV6A 4APMA 4A5TS 4Z0FA 5COEA 3ZLEA 5CP9A 5CS1A 2Q8BA 5CS5A 2LL3A 4DURA 1GP9A 5EOKA 5CT3A 1HKYA 2F83A 3SP8A 3MKPA 4R19A 4UAOA
chains in the Genus database with same CATH topology
2HGFA 2J8LA 2YILA 5CS9A 1I8NA 4YIZA 2X2ZA 4R1CA 3ZWZA 4R1BA 5CSQA 5CS3A 5I25A 1Z40A 1NK1A 2YIOA 3HN4A 2QJ2A 4IUAA 4YIVA 2Q8AA 2KL5A 1GMNA 2J8JA 2Y8RA 2YIPA 2Z8WA 2Z8VA 4R1AA 3SRIA 1BHTA 4Z0DA 4APLA 5CT2A 1YXEA 5EODA 2LL4M 1W8KA 3HMTA 3HMRA 1GMOA 3HMSA 1W81A 4Z09A 5CT1A 2K13X 2QJ4A 3SRJA 4Z0EA 4UV6A 4APMA 4A5TS 4Z0FA 5COEA 3ZLEA 5CP9A 5CS1A 2Q8BA 5CS5A 2LL3A 4DURA 1GP9A 5EOKA 5CT3A 1HKYA 2F83A 3SP8A 3MKPA 4R19A 4UAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HGF A;  2J8L A;  2YIL A;  5CS9 A;  1I8N A;  3ZWZ A;  2X2Z A;  4R1C A;  5I25 A;  4R1B A;  5CSQ A;  5CS3 A;  1Z40 A;  1NK1 A;  2YIO A;  3HN4 A;  2QJ2 A;  4IUA A;  2Q8A A;  2Z8V A;  1GMN A;  2J8J A;  2Y8R A;  2YIP A;  2Z8W A;  4R1A A;  3SRI A;  1BHT A;  4Z0D A;  4APL A;  5CT2 A;  1YXE A;  5EOD A;  2LL4 M;  1W8K A;  3HMT A;  3HMR A;  1GMO A;  3HMS A;  1W81 A;  4Z09 A;  5CT1 A;  2K13 X;  2QJ4 A;  3SRJ A;  4Z0E A;  4UV6 A;  4APM A;  4A5T S;  4Z0F A;  5COE A;  3ZLE A;  5CP9 A;  5CS1 A;  2Q8B A;  5CS5 A;  2LL3 A;  4DUR A;  1GP9 A;  5EOK A;  5CT3 A;  1HKY A;  2F83 A;  3SP8 A;  3MKP A;  4R19 A;  4UAO A; 
#chains in the Genus database with same CATH topology
 2HGF A;  2J8L A;  2YIL A;  5CS9 A;  1I8N A;  4YIZ A;  2X2Z A;  4R1C A;  3ZWZ A;  4R1B A;  5CSQ A;  5CS3 A;  5I25 A;  1Z40 A;  1NK1 A;  2YIO A;  3HN4 A;  2QJ2 A;  4IUA A;  4YIV A;  2Q8A A;  2KL5 A;  1GMN A;  2J8J A;  2Y8R A;  2YIP A;  2Z8W A;  2Z8V A;  4R1A A;  3SRI A;  1BHT A;  4Z0D A;  4APL A;  5CT2 A;  1YXE A;  5EOD A;  2LL4 M;  1W8K A;  3HMT A;  3HMR A;  1GMO A;  3HMS A;  1W81 A;  4Z09 A;  5CT1 A;  2K13 X;  2QJ4 A;  3SRJ A;  4Z0E A;  4UV6 A;  4APM A;  4A5T S;  4Z0F A;  5COE A;  3ZLE A;  5CP9 A;  5CS1 A;  2Q8B A;  5CS5 A;  2LL3 A;  4DUR A;  1GP9 A;  5EOK A;  5CT3 A;  1HKY A;  2F83 A;  3SP8 A;  3MKP A;  4R19 A;  4UAO A; 
#chains in the Genus database with same CATH homology
 2HGF A;  2J8L A;  2YIL A;  5CS9 A;  1I8N A;  4YIZ A;  2X2Z A;  4R1C A;  3ZWZ A;  4R1B A;  5CSQ A;  5CS3 A;  5I25 A;  1Z40 A;  1NK1 A;  2YIO A;  3HN4 A;  2QJ2 A;  4IUA A;  4YIV A;  2Q8A A;  2KL5 A;  1GMN A;  2J8J A;  2Y8R A;  2YIP A;  2Z8W A;  2Z8V A;  4R1A A;  3SRI A;  1BHT A;  4Z0D A;  4APL A;  5CT2 A;  1YXE A;  5EOD A;  2LL4 M;  1W8K A;  3HMT A;  3HMR A;  1GMO A;  3HMS A;  1W81 A;  4Z09 A;  5CT1 A;  2K13 X;  2QJ4 A;  3SRJ A;  4Z0E A;  4UV6 A;  4APM A;  4A5T S;  4Z0F A;  5COE A;  3ZLE A;  5CP9 A;  5CS1 A;  2Q8B A;  5CS5 A;  2LL3 A;  4DUR A;  1GP9 A;  5EOK A;  5CT3 A;  1HKY A;  2F83 A;  3SP8 A;  3MKP A;  4R19 A;  4UAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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