4UAOA

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi in complex with an invasion inhibitory antibody
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
336
structure length
332
Chain Sequence
MSNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNADDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDSQNKDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEETDYEKIQEGFRQNNRDMIKSAFLPVGASDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords Apical merozoite antigen 1
publication title Crystal Structure of Plasmodium knowlesi Apical Membrane Antigen 1 and Its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
source organism Plasmodium knowlesi
total genus 91
structure length 332
sequence length 336
ec nomenclature
pdb deposition date 2014-08-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uaoA01
4Z0DA 4APLA 2YIPA 1I8NA 2LL3A 2Y8RA 5CT2A 1W8KA 5CS9A 3HMTA 5EOKA 4UAOA 2Z8WA 3MKPA 1GP9A 4R1AA 1GMOA 5CS1A 2HGFA 3SP8A 2Q8BA 2J8LA 2Z8VA 5I25A 4R19A 5COEA 5CS3A 2F83A 2YIOA 5CSQA 4Z0EA 3SRIA 3ZWZA 3SRJA 5EODA 1W81A 3HMSA 4R1BA 4A5TS 3HMRA 5CP9A 2K13X 2LL4M 2QJ2A 4APMA 2YILA 5CT3A 3ZLEA 1YXEA 1BHTA 1NK1A 2X2ZA 5CT1A 4UV6A 4DURA 1Z40A 1GMNA 4Z0FA 4IUAA 3HN4A 2J8JA 2Q8AA 4R1CA 4Z09A 2QJ4A 1HKYA 5CS5A
chains in the Genus database with same CATH superfamily
4Z0DA 4APLA 4YIVA 2YIPA 1I8NA 2LL3A 2Y8RA 5CT2A 1W8KA 2KL5A 5CS9A 3HMTA 5EOKA 4UAOA 2Z8WA 3MKPA 1GP9A 4R1AA 1GMOA 5CS1A 2HGFA 3SP8A 2Q8BA 2J8LA 2Z8VA 5I25A 4R19A 5COEA 5CS3A 2F83A 2YIOA 5CSQA 4Z0EA 3SRIA 3ZWZA 3SRJA 5EODA 1W81A 3HMSA 4R1BA 4A5TS 3HMRA 5CP9A 2K13X 2LL4M 2QJ2A 4APMA 2YILA 5CT3A 4YIZA 3ZLEA 1YXEA 1BHTA 1NK1A 2X2ZA 5CT1A 4UV6A 4DURA 1Z40A 1GMNA 4Z0FA 4IUAA 3HN4A 2J8JA 2Q8AA 4R1CA 4Z09A 2QJ4A 1HKYA 5CS5A
chains in the Genus database with same CATH topology
4Z0DA 4APLA 4YIVA 2YIPA 1I8NA 2LL3A 2Y8RA 5CT2A 1W8KA 2KL5A 5CS9A 3HMTA 5EOKA 4UAOA 2Z8WA 3MKPA 1GP9A 4R1AA 1GMOA 5CS1A 2HGFA 3SP8A 2Q8BA 2J8LA 2Z8VA 5I25A 4R19A 5COEA 5CS3A 2F83A 2YIOA 5CSQA 4Z0EA 3SRIA 3ZWZA 3SRJA 5EODA 1W81A 3HMSA 4R1BA 4A5TS 3HMRA 5CP9A 2K13X 2LL4M 2QJ2A 4APMA 2YILA 5CT3A 4YIZA 3ZLEA 1YXEA 1BHTA 1NK1A 2X2ZA 5CT1A 4UV6A 4DURA 1Z40A 1GMNA 4Z0FA 4IUAA 3HN4A 2J8JA 2Q8AA 4R1CA 4Z09A 2QJ4A 1HKYA 5CS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z0D A;  4APL A;  2YIP A;  1I8N A;  2LL3 A;  2Y8R A;  5CT2 A;  1W8K A;  5CS9 A;  3HMT A;  5EOK A;  4UAO A;  2Z8W A;  3MKP A;  1GP9 A;  4R1A A;  1GMO A;  5CS1 A;  2HGF A;  3SP8 A;  2Q8B A;  2J8L A;  2Z8V A;  5I25 A;  4R19 A;  5COE A;  5CS3 A;  2F83 A;  2YIO A;  5CSQ A;  4Z0E A;  3SRI A;  3ZWZ A;  3SRJ A;  5EOD A;  1W81 A;  3HMS A;  4R1B A;  4A5T S;  3HMR A;  5CP9 A;  2K13 X;  2LL4 M;  2QJ2 A;  4APM A;  2YIL A;  5CT3 A;  3ZLE A;  1YXE A;  1BHT A;  1NK1 A;  2X2Z A;  5CT1 A;  4UV6 A;  4DUR A;  1Z40 A;  1GMN A;  4Z0F A;  4IUA A;  3HN4 A;  2J8J A;  2Q8A A;  4R1C A;  4Z09 A;  2QJ4 A;  1HKY A;  5CS5 A; 
#chains in the Genus database with same CATH topology
 4Z0D A;  4APL A;  4YIV A;  2YIP A;  1I8N A;  2LL3 A;  2Y8R A;  5CT2 A;  1W8K A;  2KL5 A;  5CS9 A;  3HMT A;  5EOK A;  4UAO A;  2Z8W A;  3MKP A;  1GP9 A;  4R1A A;  1GMO A;  5CS1 A;  2HGF A;  3SP8 A;  2Q8B A;  2J8L A;  2Z8V A;  5I25 A;  4R19 A;  5COE A;  5CS3 A;  2F83 A;  2YIO A;  5CSQ A;  4Z0E A;  3SRI A;  3ZWZ A;  3SRJ A;  5EOD A;  1W81 A;  3HMS A;  4R1B A;  4A5T S;  3HMR A;  5CP9 A;  2K13 X;  2LL4 M;  2QJ2 A;  4APM A;  2YIL A;  5CT3 A;  4YIZ A;  3ZLE A;  1YXE A;  1BHT A;  1NK1 A;  2X2Z A;  5CT1 A;  4UV6 A;  4DUR A;  1Z40 A;  1GMN A;  4Z0F A;  4IUA A;  3HN4 A;  2J8J A;  2Q8A A;  4R1C A;  4Z09 A;  2QJ4 A;  1HKY A;  5CS5 A; 
#chains in the Genus database with same CATH homology
 4Z0D A;  4APL A;  4YIV A;  2YIP A;  1I8N A;  2LL3 A;  2Y8R A;  5CT2 A;  1W8K A;  2KL5 A;  5CS9 A;  3HMT A;  5EOK A;  4UAO A;  2Z8W A;  3MKP A;  1GP9 A;  4R1A A;  1GMO A;  5CS1 A;  2HGF A;  3SP8 A;  2Q8B A;  2J8L A;  2Z8V A;  5I25 A;  4R19 A;  5COE A;  5CS3 A;  2F83 A;  2YIO A;  5CSQ A;  4Z0E A;  3SRI A;  3ZWZ A;  3SRJ A;  5EOD A;  1W81 A;  3HMS A;  4R1B A;  4A5T S;  3HMR A;  5CP9 A;  2K13 X;  2LL4 M;  2QJ2 A;  4APM A;  2YIL A;  5CT3 A;  4YIZ A;  3ZLE A;  1YXE A;  1BHT A;  1NK1 A;  2X2Z A;  5CT1 A;  4UV6 A;  4DUR A;  1Z40 A;  1GMN A;  4Z0F A;  4IUA A;  3HN4 A;  2J8J A;  2Q8A A;  4R1C A;  4Z09 A;  2QJ4 A;  1HKY A;  5CS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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