4UB6O

Native structure of photosystem ii (dataset-1) by a femtosecond x-ray laser
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
243
structure length
243
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Photosystem Q(B) protein
publication title Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses.
pubmed doi rcsb
molecule tags Electron transport, photosynthesis
total genus 54
structure length 243
sequence length 243
chains with identical sequence o
ec nomenclature
pdb deposition date 2014-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 4ub6O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 4ub6O02
5G39A 5GTHO 5KAIO 4UB6O 5TISO 5H2FO 3A0BO 1S5LO 3JCUO 4IL6O 5GTIO 3A0HO 4PJ0O 5B66O 4UB8O 5KAFO 2AXTO 5E79O 5B5EO 5G3AA 3WU2O 3KZIO 5G38A
chains in the Genus database with same CATH superfamily
3WI5A 3SY9A 4GHBA 2R4OA 2KC0A 4AFKA 5GTHO 1MM4A 2Y7SA 2J1NA 2R8AA 3NSGA 3PF1A 2XTQA 1ZHTA 2ERVA 5KAIO 4LSEA 4O3YA 3VY8X 4AYNA 3EMNX 5T5FA 3A0BO 1HXTA 3AAAA 3DA3A 3AA7B 4RJWA 4F4BA 3NJTA 4AYMC 3LK42 4BUMX 5ADXK 4FUVA 4KR4A 2QTKA 2LHFA 1QJ9A 2KXPA 1ZHZA 4PJ0O 4C00A 1Q9GA 5DL5A 4O3WA 4O49A 2MHLA 2X27X 3BRZA 1ZHWA 2KZ7A 4XNKA 3UAQA 4N58A 4FT6A 4B61A 4K3CA 4D5UA 5G3AA 3WU2O 3DWOX 4RLBA 3AA0A 4FESA 4FQEA 4O4UA 3VZTX 2OMFA 3FYXA 5ADXL 2FGQX 4O3ZA 4LSHA 4D65A 3VZWX 3AA6A 2XTRA 3LK2B 1E54A 5G39A 1GFQA 1HXUA 1H6S1 4GCPA 1BT9A 2KDYA 4UB6O 2N2MA 2PRNA 3SZVA 4LSFA 3UPGA 2PORA 3AAEA 3PGRA 3POQA 4O3XB 2WJQA 2YPVA 3SY7A 3HOLA 1S5LO 5PRNA 7PRNA 1IZNB 5G26A 3A2SX 4G75A 2F1VA 2R89A 2XG6A 2XE3A 1PHOA 4N75A 3T24A 3VY9X 5DL8A 1ZHXA 1GFNA 3LK3B 2MNHA 3RBHA 4AKRA 1P4TA 3KVDD 3QRAA 5KAFO 3PGUA 3T0SA 1HXXA 4FRTA 1BXWA 2AXTO 3VE1A 5B5EO 3AA1A 2M07A 3DZMA 1GFPA 3HOEA 1YS5A 5EE2A 4C69X 3KZIO 2J4UP 4PUXA 1T16A 2WJRA 4CTDA 3T20A 1GFOA 2R4NA 3PQUA 4N74A 4FZLA 4RJXA 2R4PA 1QJPA 2JQYA 4QQ1A 1THQA 3BRYA 3AAAB 3HWBA 3PRNA 5TISO 3VE2A 2XE1A 3O0EA 3WI4A 2XE5A 1QJ8A 4C4VA 2K4TA 2Y0KA 4PR7A 2IWVA 1MPFA 2KXPB 4FSPA 2F1TA 4AZLA 4IL6O 5GTIO 6PRNA 2IWWA 4GCSA 3SYSA 3JTYA 1OPFA 3G7GA 5IYUA 2KZ7B 4U9CA 4AUIA 3A0HO 3PGSA 3AA7A 4D64A 1ZHYA 2XE2A 3AA0B 3BS0A 2F1CX 2Y2XA 4RL9A 5E79O 3SZDA 3VZUX 1OSMA 4FRXA 4KR8A 4LSIA 2GE4A 4FOZA 4GCQA 2LFUA 3LK41 3POUA 3PQSA 3AA6B 4AYDC 2R4LA 2YNKA 3POXA 4E1TA 3DWNA 2N2LA 4JFBA 5G38A 2ODJA 2ZFGA 2Y0LA 1ORMA 2WVPA 4AYEC 3TZGA 3AAEB 2W80C 4C4VB 4G76A 2O4VA 3DA4A 4JCHA 5D5DA 3LK2A 2M06A 4AYID 8PRNA 1BH3A 5JDPA 3C5OA 2XMXA 4O4XA 5DL7A 4FMSA 1Q9FA 5AFUK 3PORA 5H2FO 1MM5A 3HW9A 4FZMA 3JCUO 4AKRB 5GV0A 4E1SA 4FSOA 3K19A 3UU2A 5FVNA 1GFMA 4N59A 1PRNA 4RLCA 4FZNA 3AA1B 1IZNA 4K3BA 5B66O 2FGRA 1T1LA 2K0LA 3GP6A 2Y0HA 3QRCA 4GF4A 4UB8O 4XNLA 2X9KA 3SYBA 5AFUL 2JMMA 2R88A 3LK3A 5DL6A 4AKMA 1G90A 4Z3TA 2W81C 2ZLDA 4KRAA 3V8UA
chains in the Genus database with same CATH topology
5G39A 5GTHO 5KAIO 4UB6O 5TISO 5H2FO 3A0BO 1S5LO 3JCUO 4IL6O 5GTIO 3A0HO 4PJ0O 5B66O 4UB8O 5KAFO 2AXTO 5E79O 5B5EO 5G3AA 3WU2O 3KZIO 5G38A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G39 A;  5GTH O;  5KAI O;  4UB6 O;  5TIS O;  5H2F O;  3A0B O;  1S5L O;  3JCU O;  4IL6 O;  5GTI O;  3A0H O;  4PJ0 O;  5B66 O;  4UB8 O;  5KAF O;  2AXT O;  5E79 O;  5B5E O;  5G3A A;  3WU2 O;  3KZI O;  5G38 A; 
#chains in the Genus database with same CATH topology
 3WI5 A;  3SY9 A;  4GHB A;  2R4O A;  2KC0 A;  4AFK A;  5GTH O;  1MM4 A;  2Y7S A;  2J1N A;  2R8A A;  3NSG A;  3PF1 A;  2XTQ A;  1ZHT A;  2ERV A;  5KAI O;  4LSE A;  4O3Y A;  3VY8 X;  4AYN A;  3EMN X;  5T5F A;  3A0B O;  1HXT A;  3AAA A;  3DA3 A;  3AA7 B;  4RJW A;  4F4B A;  3NJT A;  4AYM C;  3LK4 2;  4BUM X;  5ADX K;  4FUV A;  4KR4 A;  2QTK A;  2LHF A;  1QJ9 A;  2KXP A;  1ZHZ A;  4PJ0 O;  4C00 A;  1Q9G A;  5DL5 A;  4O3W A;  4O49 A;  2MHL A;  2X27 X;  3BRZ A;  1ZHW A;  2KZ7 A;  4XNK A;  3UAQ A;  4N58 A;  4FT6 A;  4B61 A;  4K3C A;  4D5U A;  5G3A A;  3WU2 O;  3DWO X;  4RLB A;  3AA0 A;  4FES A;  4FQE A;  4O4U A;  3VZT X;  2OMF A;  3FYX A;  5ADX L;  2FGQ X;  4O3Z A;  4LSH A;  4D65 A;  3VZW X;  3AA6 A;  2XTR A;  3LK2 B;  1E54 A;  5G39 A;  1GFQ A;  1HXU A;  1H6S 1;  4GCP A;  1BT9 A;  2KDY A;  4UB6 O;  2N2M A;  2PRN A;  3SZV A;  4LSF A;  3UPG A;  2POR A;  3AAE A;  3PGR A;  3POQ A;  4O3X B;  2WJQ A;  2YPV A;  3SY7 A;  3HOL A;  1S5L O;  5PRN A;  7PRN A;  1IZN B;  5G26 A;  3A2S X;  4G75 A;  2F1V A;  2R89 A;  2XG6 A;  2XE3 A;  1PHO A;  4N75 A;  3T24 A;  3VY9 X;  5DL8 A;  1ZHX A;  1GFN A;  3LK3 B;  2MNH A;  3RBH A;  4AKR A;  1P4T A;  3KVD D;  3QRA A;  5KAF O;  3PGU A;  3T0S A;  1HXX A;  4FRT A;  1BXW A;  2AXT O;  3VE1 A;  5B5E O;  3AA1 A;  2M07 A;  3DZM A;  1GFP A;  3HOE A;  1YS5 A;  5EE2 A;  4C69 X;  3KZI O;  2J4U P;  4PUX A;  1T16 A;  2WJR A;  4CTD A;  3T20 A;  1GFO A;  2R4N A;  3PQU A;  4N74 A;  4FZL A;  4RJX A;  2R4P A;  1QJP A;  2JQY A;  4QQ1 A;  1THQ A;  3BRY A;  3AAA B;  3HWB A;  3PRN A;  5TIS O;  3VE2 A;  2XE1 A;  3O0E A;  3WI4 A;  2XE5 A;  1QJ8 A;  4C4V A;  2K4T A;  2Y0K A;  4PR7 A;  2IWV A;  1MPF A;  2KXP B;  4FSP A;  2F1T A;  4AZL A;  4IL6 O;  5GTI O;  6PRN A;  2IWW A;  4GCS A;  3SYS A;  3JTY A;  1OPF A;  3G7G A;  5IYU A;  2KZ7 B;  4U9C A;  4AUI A;  3A0H O;  3PGS A;  3AA7 A;  4D64 A;  1ZHY A;  2XE2 A;  3AA0 B;  3BS0 A;  2F1C X;  2Y2X A;  4RL9 A;  5E79 O;  3SZD A;  3VZU X;  1OSM A;  4FRX A;  4KR8 A;  4LSI A;  2GE4 A;  4FOZ A;  4GCQ A;  2LFU A;  3LK4 1;  3POU A;  3PQS A;  3AA6 B;  4AYD C;  2R4L A;  2YNK A;  3POX A;  4E1T A;  3DWN A;  2N2L A;  4JFB A;  5G38 A;  2ODJ A;  2ZFG A;  2Y0L A;  1ORM A;  2WVP A;  4AYE C;  3TZG A;  3AAE B;  2W80 C;  4C4V B;  4G76 A;  2O4V A;  3DA4 A;  4JCH A;  5D5D A;  3LK2 A;  2M06 A;  4AYI D;  8PRN A;  1BH3 A;  5JDP A;  3C5O A;  2XMX A;  4O4X A;  5DL7 A;  4FMS A;  1Q9F A;  5AFU K;  3POR A;  5H2F O;  1MM5 A;  3HW9 A;  4FZM A;  3JCU O;  4AKR B;  5GV0 A;  4E1S A;  4FSO A;  3K19 A;  3UU2 A;  5FVN A;  1GFM A;  4N59 A;  1PRN A;  4RLC A;  4FZN A;  3AA1 B;  1IZN A;  4K3B A;  5B66 O;  2FGR A;  1T1L A;  2K0L A;  3GP6 A;  2Y0H A;  3QRC A;  4GF4 A;  4UB8 O;  4XNL A;  2X9K A;  3SYB A;  5AFU L;  2JMM A;  2R88 A;  3LK3 A;  5DL6 A;  4AKM A;  1G90 A;  4Z3T A;  2W81 C;  2ZLD A;  4KRA A;  3V8U A; 
#chains in the Genus database with same CATH homology
 5G39 A;  5GTH O;  5KAI O;  4UB6 O;  5TIS O;  5H2F O;  3A0B O;  1S5L O;  3JCU O;  4IL6 O;  5GTI O;  3A0H O;  4PJ0 O;  5B66 O;  4UB8 O;  5KAF O;  2AXT O;  5E79 O;  5B5E O;  5G3A A;  3WU2 O;  3KZI O;  5G38 A; 
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