4UDIA

Crystal structure of b-1,4-mannopyranosyl-chitobiose phosphorylase at 1.85 angstrom from unknown human gut bacteria (uhgb_mp)
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
321
structure length
321
Chain Sequence
b'VIIPWEERPAGCKDVLWRSVANPIIPRDLLPTSNSIFNSAVVPFGDGFAGVFRCDDTSRRMRLHVGFSKDAINWNIKEEPLKFQCDDEEIGTWVYGYDPRVCFIEDRYYVTWCNGYHGPTIGVAYTFDFETFHQLENAFIPFNRNGVLFPRKINGRFAMLSRPSDNGHTPFGDIFYSESPDMEFWGRHRHVMSPAAFEVSAWQCTKIGAGPIPVETPEGWLLIYHGVLHSCNGYVYSFGSALLDLDEPWKVKFRSGPYLLAPREPYECMGDVPNVCFPCAALHDNETGRIAIYYGCADTVTGLAFGYIPEIIEFTKRTSII'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UHGB_MP
publication title Structural Bases for N-Glycan Processing by Mannoside Phosphorylase.
pubmed doi rcsb
source organism Uncultured organism
molecule tags Transferase
total genus 74
structure length 321
sequence length 321
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.4.1.-:
pdb deposition date 2014-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4udiA00
3ZXJA 3KSTA 2AEZA 3C7FA 5GLNA 5FK8A 3BYLA 1Y9MA 5FMBA 3QEEA 5A7VA 3CU9A 4UDJA 5GLOA 4FFFA 5FKBA 2EXKA 2QQWA 2QQVA 3UGHA 2YFRA 3R4ZA 3KF3A 4AK7A 3LIGA 3UGFA 3D5YA 3UGGA 1Y7BA 3P2NA 3VT2A 3WAUA 3QEDA 1VKDA 4FFIA 4ONZA 3R67A 2ADDA 4UDGA 3D60A 5FLWA 3LIHA 2QQUA 3WPYA 5JOZA 3AKFA 5JOXA 3WPVA 5AYEA 2VDTA 3C7HA 3U14A 3VSSA 3ZXKA 3LFIA 4N4BA 3BYNA 3WN0A 3SC7X 3OM7A 4NOVA 3LEMA 3VT0A 2X8FA 3AKGA 3WATA 5A8DA 5AYCA 1YIFA 4MLGA 4KMIA 4U6DA 5FK7A 1GYDB 4O8PA 3OM4A 4U6BA 3C7OA 3AKIA 2EXHA 2ADEA 2YFSA 3PIJA 3QEFA 4PVIA 4N1IA 3OM2A 2X8SA 3NQHA 3LV4A 5A7VB 3VSRA 5ANNA 1ST8A 3D61A 4UDKE 1UYPA 4FFHA 3C7EA 4UDIA 3R4YA 5C0PA 4D47A 3WN1A 5FIXA 4KC7A 3WMYA 3WPUA 3WPZA 4AK5A 1YRZA 2B4WA 3OM5A 5A8CA 5FMDA 1UV4A 5FMCA 4KC8A 3QC2A 1W18A 2EXIA 2OXBA 4O8OA 5GLQA 3K1UA 5FKCA 4EQVA 3LF7A 3PIGA 3WMZA 3RWKX 3C2UA 3BYKA 4PVAA 3WN2A 2YFTA 3ZXLA 2EXJA 1PT2A 5AY9A 1Y9GA 1OYGA 1W2TA 4KCBA 4QQSA 3VSZA 4FFGA 5B6TA 3OM6A 1GYEB 4UDKA 4O8NA 5GLRA 4N2RA 3VSFA 5JOWA 3VT1A 5GLMA 3BYJA 1YI7A 5GLLA 3LDRA 1GYHA 3AKHA 5JOYA 1Y4WA 2X8TA 3WASA 3LDKA 3C7GA 5GLKA 2AC1A 3KF5A 3D5ZA 4N2ZA 3TAWA 3U75A 4COTA 1WL7A 5AYDA 4AK6A 4KCAA 2XQRA 3QZ4A 5GLPA 5B6SA 2AEYA
chains in the Genus database with same CATH superfamily
3ZXJA 3KSTA 2AEZA 3C7FA 5GLNA 5FK8A 3BYLA 1Y9MA 5FMBA 3QEEA 5A7VA 3CU9A 4UDJA 5GLOA 4FFFA 5FKBA 2EXKA 2QQWA 2QQVA 3UGHA 2YFRA 3R4ZA 3KF3A 4AK7A 3LIGA 3UGFA 3D5YA 3UGGA 1Y7BA 3P2NA 3VT2A 3WAUA 3QEDA 1VKDA 4FFIA 4ONZA 3R67A 2ADDA 4UDGA 3D60A 5FLWA 3LIHA 2QQUA 3WPYA 5JOZA 3AKFA 5JOXA 3WPVA 5AYEA 2VDTA 3C7HA 3U14A 3VSSA 3ZXKA 3LFIA 4N4BA 3BYNA 3WN0A 3SC7X 3OM7A 5C2MA 4NOVA 3LEMA 3VT0A 2X8FA 3AKGA 3WATA 5A8DA 5AYCA 1YIFA 4MLGA 4KMIA 4U6DA 5FK7A 1GYDB 4O8PA 3OM4A 4U6BA 3C7OA 3AKIA 2EXHA 2ADEA 2YFSA 3PIJA 3QEFA 4PVIA 4N1IA 3OM2A 2X8SA 3NQHA 3LV4A 5A7VB 3VSRA 5ANNA 1ST8A 3D61A 4UDKE 1UYPA 4FFHA 3C7EA 4UDIA 3R4YA 5C0PA 4D47A 3WN1A 5FIXA 4KC7A 3WMYA 3WPUA 3WPZA 4AK5A 1YRZA 2B4WA 3OM5A 5A8CA 5FMDA 1UV4A 5FMCA 4KC8A 3QC2A 1W18A 2EXIA 2OXBA 4O8OA 5GLQA 3K1UA 5FKCA 4EQVA 3LF7A 3PIGA 3WMZA 3RWKX 3C2UA 3BYKA 4PVAA 3WN2A 2YFTA 3ZXLA 2EXJA 1PT2A 5AY9A 1Y9GA 1OYGA 1W2TA 4KCBA 4QQSA 3VSZA 4FFGA 5B6TA 3OM6A 1TL2A 1GYEB 4UDKA 4O8NA 5GLRA 4N2RA 3VSFA 5JOWA 3VT1A 5GLMA 3BYJA 1YI7A 5GLLA 3LDRA 1GYHA 3AKHA 5JOYA 1Y4WA 2X8TA 3WASA 3LDKA 3C7GA 5GLKA 2AC1A 3KF5A 3D5ZA 4N2ZA 3TAWA 3U75A 4COTA 1WL7A 5AYDA 4AK6A 4KCAA 2XQRA 3QZ4A 5GLPA 5B6SA 2AEYA
chains in the Genus database with same CATH topology
3ZXJA 3KSTA 2AEZA 3C7FA 5GLNA 5FK8A 3BYLA 1Y9MA 5FMBA 3QEEA 5A7VA 3CU9A 4UDJA 5GLOA 4FFFA 5FKBA 2EXKA 2QQWA 2QQVA 3UGHA 2YFRA 3R4ZA 3KF3A 4AK7A 3LIGA 3UGFA 3D5YA 3UGGA 1Y7BA 3P2NA 3VT2A 3WAUA 3QEDA 1VKDA 4FFIA 4ONZA 3R67A 2ADDA 4UDGA 3D60A 5FLWA 3LIHA 2QQUA 3WPYA 5JOZA 3AKFA 5JOXA 3WPVA 5AYEA 2VDTA 3C7HA 3U14A 3VSSA 3ZXKA 3LFIA 4N4BA 3BYNA 3WN0A 3SC7X 3OM7A 4NOVA 3LEMA 3VT0A 2X8FA 3AKGA 3WATA 5A8DA 5AYCA 1YIFA 4MLGA 4KMIA 4U6DA 5FK7A 1GYDB 4O8PA 3OM4A 4U6BA 3C7OA 3AKIA 2EXHA 2ADEA 2YFSA 3PIJA 3QEFA 4PVIA 4N1IA 3OM2A 2X8SA 3NQHA 3LV4A 5A7VB 3VSRA 5ANNA 1ST8A 3D61A 4UDKE 1UYPA 4FFHA 3C7EA 4UDIA 3R4YA 5C0PA 4D47A 3WN1A 5FIXA 4KC7A 3WMYA 3WPUA 3WPZA 4AK5A 1YRZA 2B4WA 3OM5A 5A8CA 5FMDA 1UV4A 5FMCA 4KC8A 3QC2A 1W18A 2EXIA 2OXBA 4O8OA 5GLQA 3K1UA 5FKCA 4EQVA 3LF7A 3PIGA 3WMZA 3RWKX 3C2UA 3BYKA 4PVAA 3WN2A 2YFTA 3ZXLA 2EXJA 1PT2A 5AY9A 1Y9GA 1OYGA 1W2TA 4KCBA 4QQSA 3VSZA 4FFGA 5B6TA 3OM6A 1GYEB 4UDKA 4O8NA 5GLRA 4N2RA 3VSFA 5JOWA 3VT1A 5GLMA 3BYJA 1YI7A 5GLLA 3LDRA 1GYHA 3AKHA 5JOYA 1Y4WA 2X8TA 3WASA 3LDKA 3C7GA 5GLKA 2AC1A 3KF5A 3D5ZA 4N2ZA 3TAWA 3U75A 4COTA 1WL7A 5AYDA 4AK6A 4KCAA 2XQRA 3QZ4A 5GLPA 5B6SA 2AEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZXJ A;  3KST A;  2AEZ A;  3C7F A;  5GLN A;  5FK8 A;  3BYL A;  1Y9M A;  5FMB A;  3QEE A;  5A7V A;  3CU9 A;  4UDJ A;  5GLO A;  4FFF A;  5FKB A;  2EXK A;  2QQW A;  2QQV A;  3UGH A;  2YFR A;  3R4Z A;  3KF3 A;  4AK7 A;  3LIG A;  3UGF A;  3D5Y A;  3UGG A;  1Y7B A;  3P2N A;  3VT2 A;  3WAU A;  3QED A;  1VKD A;  4FFI A;  4ONZ A;  3R67 A;  2ADD A;  4UDG A;  3D60 A;  5FLW A;  3LIH A;  2QQU A;  3WPY A;  5JOZ A;  3AKF A;  5JOX A;  3WPV A;  5AYE A;  2VDT A;  3C7H A;  3U14 A;  3VSS A;  3ZXK A;  3LFI A;  4N4B A;  3BYN A;  3WN0 A;  3SC7 X;  3OM7 A;  4NOV A;  3LEM A;  3VT0 A;  2X8F A;  3AKG A;  3WAT A;  5A8D A;  5AYC A;  1YIF A;  4MLG A;  4KMI A;  4U6D A;  5FK7 A;  1GYD B;  4O8P A;  3OM4 A;  4U6B A;  3C7O A;  3AKI A;  2EXH A;  2ADE A;  2YFS A;  3PIJ A;  3QEF A;  4PVI A;  4N1I A;  3OM2 A;  2X8S A;  3NQH A;  3LV4 A;  5A7V B;  3VSR A;  5ANN A;  1ST8 A;  3D61 A;  4UDK E;  1UYP A;  4FFH A;  3C7E A;  4UDI A;  3R4Y A;  5C0P A;  4D47 A;  3WN1 A;  5FIX A;  4KC7 A;  3WMY A;  3WPU A;  3WPZ A;  4AK5 A;  1YRZ A;  2B4W A;  3OM5 A;  5A8C A;  5FMD A;  1UV4 A;  5FMC A;  4KC8 A;  3QC2 A;  1W18 A;  2EXI A;  2OXB A;  4O8O A;  5GLQ A;  3K1U A;  5FKC A;  4EQV A;  3LF7 A;  3PIG A;  3WMZ A;  3RWK X;  3C2U A;  3BYK A;  4PVA A;  3WN2 A;  2YFT A;  3ZXL A;  2EXJ A;  1PT2 A;  5AY9 A;  1Y9G A;  1OYG A;  1W2T A;  4KCB A;  4QQS A;  3VSZ A;  4FFG A;  5B6T A;  3OM6 A;  1GYE B;  4UDK A;  4O8N A;  5GLR A;  4N2R A;  3VSF A;  5JOW A;  3VT1 A;  5GLM A;  3BYJ A;  1YI7 A;  5GLL A;  3LDR A;  1GYH A;  3AKH A;  5JOY A;  1Y4W A;  2X8T A;  3WAS A;  3LDK A;  3C7G A;  5GLK A;  2AC1 A;  3KF5 A;  3D5Z A;  4N2Z A;  3TAW A;  3U75 A;  4COT A;  1WL7 A;  5AYD A;  4AK6 A;  4KCA A;  2XQR A;  3QZ4 A;  5GLP A;  5B6S A;  2AEY A; 
#chains in the Genus database with same CATH topology
 3ZXJ A;  3KST A;  2AEZ A;  3C7F A;  5GLN A;  5FK8 A;  3BYL A;  1Y9M A;  5FMB A;  3QEE A;  5A7V A;  3CU9 A;  4UDJ A;  5GLO A;  4FFF A;  5FKB A;  2EXK A;  2QQW A;  2QQV A;  3UGH A;  2YFR A;  3R4Z A;  3KF3 A;  4AK7 A;  3LIG A;  3UGF A;  3D5Y A;  3UGG A;  1Y7B A;  3P2N A;  3VT2 A;  3WAU A;  3QED A;  1VKD A;  4FFI A;  4ONZ A;  3R67 A;  2ADD A;  4UDG A;  3D60 A;  5FLW A;  3LIH A;  2QQU A;  3WPY A;  5JOZ A;  3AKF A;  5JOX A;  3WPV A;  5AYE A;  2VDT A;  3C7H A;  3U14 A;  3VSS A;  3ZXK A;  3LFI A;  4N4B A;  3BYN A;  3WN0 A;  3SC7 X;  3OM7 A;  5C2M A;  4NOV A;  3LEM A;  3VT0 A;  2X8F A;  3AKG A;  3WAT A;  5A8D A;  5AYC A;  1YIF A;  4MLG A;  4KMI A;  4U6D A;  5FK7 A;  1GYD B;  4O8P A;  3OM4 A;  4U6B A;  3C7O A;  3AKI A;  2EXH A;  2ADE A;  2YFS A;  3PIJ A;  3QEF A;  4PVI A;  4N1I A;  3OM2 A;  2X8S A;  3NQH A;  3LV4 A;  5A7V B;  3VSR A;  5ANN A;  1ST8 A;  3D61 A;  4UDK E;  1UYP A;  4FFH A;  3C7E A;  4UDI A;  3R4Y A;  5C0P A;  4D47 A;  3WN1 A;  5FIX A;  4KC7 A;  3WMY A;  3WPU A;  3WPZ A;  4AK5 A;  1YRZ A;  2B4W A;  3OM5 A;  5A8C A;  5FMD A;  1UV4 A;  5FMC A;  4KC8 A;  3QC2 A;  1W18 A;  2EXI A;  2OXB A;  4O8O A;  5GLQ A;  3K1U A;  5FKC A;  4EQV A;  3LF7 A;  3PIG A;  3WMZ A;  3RWK X;  3C2U A;  3BYK A;  4PVA A;  3WN2 A;  2YFT A;  3ZXL A;  2EXJ A;  1PT2 A;  5AY9 A;  1Y9G A;  1OYG A;  1W2T A;  4KCB A;  4QQS A;  3VSZ A;  4FFG A;  5B6T A;  3OM6 A;  1TL2 A;  1GYE B;  4UDK A;  4O8N A;  5GLR A;  4N2R A;  3VSF A;  5JOW A;  3VT1 A;  5GLM A;  3BYJ A;  1YI7 A;  5GLL A;  3LDR A;  1GYH A;  3AKH A;  5JOY A;  1Y4W A;  2X8T A;  3WAS A;  3LDK A;  3C7G A;  5GLK A;  2AC1 A;  3KF5 A;  3D5Z A;  4N2Z A;  3TAW A;  3U75 A;  4COT A;  1WL7 A;  5AYD A;  4AK6 A;  4KCA A;  2XQR A;  3QZ4 A;  5GLP A;  5B6S A;  2AEY A; 
#chains in the Genus database with same CATH homology
 3ZXJ A;  3KST A;  2AEZ A;  3C7F A;  5GLN A;  5FK8 A;  3BYL A;  1Y9M A;  5FMB A;  3QEE A;  5A7V A;  3CU9 A;  4UDJ A;  5GLO A;  4FFF A;  5FKB A;  2EXK A;  2QQW A;  2QQV A;  3UGH A;  2YFR A;  3R4Z A;  3KF3 A;  4AK7 A;  3LIG A;  3UGF A;  3D5Y A;  3UGG A;  1Y7B A;  3P2N A;  3VT2 A;  3WAU A;  3QED A;  1VKD A;  4FFI A;  4ONZ A;  3R67 A;  2ADD A;  4UDG A;  3D60 A;  5FLW A;  3LIH A;  2QQU A;  3WPY A;  5JOZ A;  3AKF A;  5JOX A;  3WPV A;  5AYE A;  2VDT A;  3C7H A;  3U14 A;  3VSS A;  3ZXK A;  3LFI A;  4N4B A;  3BYN A;  3WN0 A;  3SC7 X;  3OM7 A;  4NOV A;  3LEM A;  3VT0 A;  2X8F A;  3AKG A;  3WAT A;  5A8D A;  5AYC A;  1YIF A;  4MLG A;  4KMI A;  4U6D A;  5FK7 A;  1GYD B;  4O8P A;  3OM4 A;  4U6B A;  3C7O A;  3AKI A;  2EXH A;  2ADE A;  2YFS A;  3PIJ A;  3QEF A;  4PVI A;  4N1I A;  3OM2 A;  2X8S A;  3NQH A;  3LV4 A;  5A7V B;  3VSR A;  5ANN A;  1ST8 A;  3D61 A;  4UDK E;  1UYP A;  4FFH A;  3C7E A;  4UDI A;  3R4Y A;  5C0P A;  4D47 A;  3WN1 A;  5FIX A;  4KC7 A;  3WMY A;  3WPU A;  3WPZ A;  4AK5 A;  1YRZ A;  2B4W A;  3OM5 A;  5A8C A;  5FMD A;  1UV4 A;  5FMC A;  4KC8 A;  3QC2 A;  1W18 A;  2EXI A;  2OXB A;  4O8O A;  5GLQ A;  3K1U A;  5FKC A;  4EQV A;  3LF7 A;  3PIG A;  3WMZ A;  3RWK X;  3C2U A;  3BYK A;  4PVA A;  3WN2 A;  2YFT A;  3ZXL A;  2EXJ A;  1PT2 A;  5AY9 A;  1Y9G A;  1OYG A;  1W2T A;  4KCB A;  4QQS A;  3VSZ A;  4FFG A;  5B6T A;  3OM6 A;  1GYE B;  4UDK A;  4O8N A;  5GLR A;  4N2R A;  3VSF A;  5JOW A;  3VT1 A;  5GLM A;  3BYJ A;  1YI7 A;  5GLL A;  3LDR A;  1GYH A;  3AKH A;  5JOY A;  1Y4W A;  2X8T A;  3WAS A;  3LDK A;  3C7G A;  5GLK A;  2AC1 A;  3KF5 A;  3D5Z A;  4N2Z A;  3TAW A;  3U75 A;  4COT A;  1WL7 A;  5AYD A;  4AK6 A;  4KCA A;  2XQR A;  3QZ4 A;  5GLP A;  5B6S A;  2AEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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