4UDKE

Crystal structure of b-1,4-mannopyranosyl-chitobiose phosphorylase at 1.76 angstrom from unknown human gut bacteria (uhgb_mp) in complex with n-acetyl-d-glucosamine, beta-d-mannopyranose and inorganic phosphate
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
321
structure length
321
Chain Sequence
IIIPWEERPAGCKDVLWRSVANPIIPRDLLPTSNSIFNSAVVPFGDGFAGVFRCDDTSRRMRLHVGFSKDAINWNIKEEPLKFQCDDEEIGTWVYGYDPRVCFIEDRYYVTWCNGYHGPTIGVAYTFDFETFHQLENAFIPFNRNGVLFPRKINGRFAMLSRPSDNGHTPFGDIFYSESPDMEFWGRHRHVMSPAAFEVSAWQCTKIGAGPIPVETPEGWLLIYHGVLHSCNGYVYSFGSALLDLDEPWKVKFRSGPYLLAPREPYECMGDVPNVCFPCAALHDNETGRIAIYYGCADTVTGLAFGYIPEIIEFTKRTSII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords UHGB_MP
publication title Structural Bases for N-Glycan Processing by Mannoside Phosphorylase.
pubmed doi rcsb
source organism Uncultured organism
total genus 77
structure length 321
sequence length 321
ec nomenclature ec 2.4.1.-:
pdb deposition date 2014-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF04041 Glyco_hydro_130 beta-1,4-mannooligosaccharide phosphorylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4udkE00
1VKDA 4UDIA 2YFSA 4EQVA 5FMBA 3BYKA 5FK8A 3VT0A 3LDKA 3WMZA 1GYDB 4MLGA 3RWKX 2ADDA 2AEYA 5GLRA 2EXIA 3ZXJA 3P2NA 5AYCA 4U6DA 4NOVA 3WN0A 4QQSA 1W18A 5FKBA 3VSZA 3OM5A 3WPZA 3K1UA 3R4ZA 5B6SA 4AK5A 4N2RA 1PT2A 3OM2A 5GLMA 5GLPA 3UGHA 3OM4A 3QZ4A 3AKFA 3BYNA 4UDKE 3D5ZA 2EXKA 1YI7A 3QEFA 5JOYA 3C2UA 2EXHA 2EXJA 3WATA 1WL7A 5AYDA 4FFGA 2X8FA 4FFFA 3QC2A 5ANNA 5A7VA 5AYEA 5GLNA 3C7OA 4FFHA 4KC8A 4FFIA 3R4YA 3LDRA 4O8OA 3VSRA 3LIHA 5FMDA 3C7FA 5GLKA 5GLOA 3KF5A 3VT1A 5AY9A 5FLWA 4N2ZA 4N1IA 2YFRA 3VSSA 4KCAA 3C7HA 3TAWA 4UDJA 3WN2A 3KF3A 5JOWA 3PIGA 3LFIA 1GYEB 4KC7A 1Y9GA 3QEDA 2QQWA 5FK7A 3OM7A 3AKGA 5A7VB 4PVIA 3OM6A 3QEEA 2X8TA 3LF7A 5GLQA 4U6BA 2OXBA 1YIFA 3UGFA 3LEMA 3AKIA 3WAUA 5JOZA 5FIXA 3C7EA 2VDTA 2ADEA 4UDKA 4N4BA 3PIJA 4COTA 3VT2A 4AK6A 2B4WA 3WASA 4UDGA 3D5YA 3C7GA 4O8PA 5A8DA 1Y4WA 2QQVA 5C0PA 2X8SA 5GLLA 4AK7A 3NQHA 4KMIA 4ONZA 1Y9MA 1OYGA 3CU9A 2QQUA 3ZXLA 3LIGA 4PVAA 1Y7BA 1YRZA 5FKCA 3U75A 1W2TA 3AKHA 1GYHA 4D47A 3U14A 2YFTA 1UV4A 3BYLA 3SC7X 3VSFA 2AC1A 3BYJA 5FMCA 3ZXKA 2AEZA 3D61A 3D60A 3WPUA 4KCBA 3WMYA 1ST8A 5JOXA 3KSTA 3WN1A 5A8CA 3R67A 3WPYA 5B6TA 1UYPA 3LV4A 3UGGA 4O8NA 2XQRA 3WPVA
chains in the Genus database with same CATH superfamily
1VKDA 4UDIA 2YFSA 4EQVA 5FMBA 3BYKA 5FK8A 3VT0A 3LDKA 3WMZA 1GYDB 4MLGA 3RWKX 2ADDA 2AEYA 5GLRA 2EXIA 3ZXJA 3P2NA 5AYCA 4U6DA 4NOVA 3WN0A 4QQSA 1W18A 5FKBA 3VSZA 3OM5A 3WPZA 3K1UA 3R4ZA 5B6SA 4AK5A 4N2RA 1PT2A 3OM2A 5GLMA 5GLPA 3UGHA 3OM4A 3QZ4A 3AKFA 3BYNA 4UDKE 3D5ZA 2EXKA 1YI7A 3QEFA 5JOYA 3C2UA 2EXHA 2EXJA 3WATA 1WL7A 5AYDA 1TL2A 4FFGA 2X8FA 4FFFA 3QC2A 5ANNA 5A7VA 5AYEA 5GLNA 3C7OA 4FFHA 4KC8A 4FFIA 3R4YA 3LDRA 4O8OA 3VSRA 3LIHA 5FMDA 3C7FA 5GLKA 5GLOA 3KF5A 3VT1A 5AY9A 5C2MA 5FLWA 4N2ZA 4N1IA 2YFRA 3VSSA 4KCAA 3C7HA 3TAWA 4UDJA 3WN2A 3KF3A 5JOWA 3PIGA 3LFIA 1GYEB 4KC7A 1Y9GA 3QEDA 2QQWA 5FK7A 3OM7A 3AKGA 5A7VB 4PVIA 3OM6A 3QEEA 2X8TA 3LF7A 5GLQA 4U6BA 2OXBA 1YIFA 3UGFA 3LEMA 3AKIA 3WAUA 5JOZA 5FIXA 3C7EA 2VDTA 2ADEA 4UDKA 4N4BA 3PIJA 4COTA 3VT2A 4AK6A 2B4WA 3WASA 4UDGA 3D5YA 3C7GA 4O8PA 5A8DA 1Y4WA 2QQVA 5C0PA 2X8SA 5GLLA 4AK7A 3NQHA 4KMIA 4ONZA 1Y9MA 1OYGA 3CU9A 2QQUA 3ZXLA 3LIGA 4PVAA 1Y7BA 1YRZA 5FKCA 3U75A 1W2TA 3AKHA 1GYHA 4D47A 3U14A 2YFTA 1UV4A 3BYLA 3SC7X 3VSFA 2AC1A 3BYJA 5FMCA 3ZXKA 2AEZA 3D61A 3D60A 3WPUA 4KCBA 3WMYA 1ST8A 5JOXA 3KSTA 3WN1A 5A8CA 3R67A 3WPYA 5B6TA 1UYPA 3LV4A 3UGGA 4O8NA 2XQRA 3WPVA
chains in the Genus database with same CATH topology
1VKDA 4UDIA 2YFSA 4EQVA 5FMBA 3BYKA 5FK8A 3VT0A 3LDKA 3WMZA 1GYDB 4MLGA 3RWKX 2ADDA 2AEYA 5GLRA 2EXIA 3ZXJA 3P2NA 5AYCA 4U6DA 4NOVA 3WN0A 4QQSA 1W18A 5FKBA 3VSZA 3OM5A 3WPZA 3K1UA 3R4ZA 5B6SA 4AK5A 4N2RA 1PT2A 3OM2A 5GLMA 5GLPA 3UGHA 3OM4A 3QZ4A 3AKFA 3BYNA 4UDKE 3D5ZA 2EXKA 1YI7A 3QEFA 5JOYA 3C2UA 2EXHA 2EXJA 3WATA 1WL7A 5AYDA 4FFGA 2X8FA 4FFFA 3QC2A 5ANNA 5A7VA 5AYEA 5GLNA 3C7OA 4FFHA 4KC8A 4FFIA 3R4YA 3LDRA 4O8OA 3VSRA 3LIHA 5FMDA 3C7FA 5GLKA 5GLOA 3KF5A 3VT1A 5AY9A 5FLWA 4N2ZA 4N1IA 2YFRA 3VSSA 4KCAA 3C7HA 3TAWA 4UDJA 3WN2A 3KF3A 5JOWA 3PIGA 3LFIA 1GYEB 4KC7A 1Y9GA 3QEDA 2QQWA 5FK7A 3OM7A 3AKGA 5A7VB 4PVIA 3OM6A 3QEEA 2X8TA 3LF7A 5GLQA 4U6BA 2OXBA 1YIFA 3UGFA 3LEMA 3AKIA 3WAUA 5JOZA 5FIXA 3C7EA 2VDTA 2ADEA 4UDKA 4N4BA 3PIJA 4COTA 3VT2A 4AK6A 2B4WA 3WASA 4UDGA 3D5YA 3C7GA 4O8PA 5A8DA 1Y4WA 2QQVA 5C0PA 2X8SA 5GLLA 4AK7A 3NQHA 4KMIA 4ONZA 1Y9MA 1OYGA 3CU9A 2QQUA 3ZXLA 3LIGA 4PVAA 1Y7BA 1YRZA 5FKCA 3U75A 1W2TA 3AKHA 1GYHA 4D47A 3U14A 2YFTA 1UV4A 3BYLA 3SC7X 3VSFA 2AC1A 3BYJA 5FMCA 3ZXKA 2AEZA 3D61A 3D60A 3WPUA 4KCBA 3WMYA 1ST8A 5JOXA 3KSTA 3WN1A 5A8CA 3R67A 3WPYA 5B6TA 1UYPA 3LV4A 3UGGA 4O8NA 2XQRA 3WPVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VKD A;  4UDI A;  2YFS A;  4EQV A;  5FMB A;  3BYK A;  5FK8 A;  3VT0 A;  3LDK A;  3WMZ A;  1GYD B;  4MLG A;  3RWK X;  2ADD A;  2AEY A;  5GLR A;  2EXI A;  3ZXJ A;  3P2N A;  5AYC A;  4U6D A;  4NOV A;  3WN0 A;  4QQS A;  1W18 A;  5FKB A;  3VSZ A;  3OM5 A;  3WPZ A;  3K1U A;  3R4Z A;  5B6S A;  4AK5 A;  4N2R A;  1PT2 A;  3OM2 A;  5GLM A;  5GLP A;  3UGH A;  3OM4 A;  3QZ4 A;  3AKF A;  3BYN A;  4UDK E;  3D5Z A;  2EXK A;  1YI7 A;  3QEF A;  5JOY A;  3C2U A;  2EXH A;  2EXJ A;  3WAT A;  1WL7 A;  5AYD A;  4FFG A;  2X8F A;  4FFF A;  3QC2 A;  5ANN A;  5A7V A;  5AYE A;  5GLN A;  3C7O A;  4FFH A;  4KC8 A;  4FFI A;  3R4Y A;  3LDR A;  4O8O A;  3VSR A;  3LIH A;  5FMD A;  3C7F A;  5GLK A;  5GLO A;  3KF5 A;  3VT1 A;  5AY9 A;  5FLW A;  4N2Z A;  4N1I A;  2YFR A;  3VSS A;  4KCA A;  3C7H A;  3TAW A;  4UDJ A;  3WN2 A;  3KF3 A;  5JOW A;  3PIG A;  3LFI A;  1GYE B;  4KC7 A;  1Y9G A;  3QED A;  2QQW A;  5FK7 A;  3OM7 A;  3AKG A;  5A7V B;  4PVI A;  3OM6 A;  3QEE A;  2X8T A;  3LF7 A;  5GLQ A;  4U6B A;  2OXB A;  1YIF A;  3UGF A;  3LEM A;  3AKI A;  3WAU A;  5JOZ A;  5FIX A;  3C7E A;  2VDT A;  2ADE A;  4UDK A;  4N4B A;  3PIJ A;  4COT A;  3VT2 A;  4AK6 A;  2B4W A;  3WAS A;  4UDG A;  3D5Y A;  3C7G A;  4O8P A;  5A8D A;  1Y4W A;  2QQV A;  5C0P A;  2X8S A;  5GLL A;  4AK7 A;  3NQH A;  4KMI A;  4ONZ A;  1Y9M A;  1OYG A;  3CU9 A;  2QQU A;  3ZXL A;  3LIG A;  4PVA A;  1Y7B A;  1YRZ A;  5FKC A;  3U75 A;  1W2T A;  3AKH A;  1GYH A;  4D47 A;  3U14 A;  2YFT A;  1UV4 A;  3BYL A;  3SC7 X;  3VSF A;  2AC1 A;  3BYJ A;  5FMC A;  3ZXK A;  2AEZ A;  3D61 A;  3D60 A;  3WPU A;  4KCB A;  3WMY A;  1ST8 A;  5JOX A;  3KST A;  3WN1 A;  5A8C A;  3R67 A;  3WPY A;  5B6T A;  1UYP A;  3LV4 A;  3UGG A;  4O8N A;  2XQR A;  3WPV A; 
#chains in the Genus database with same CATH topology
 1VKD A;  4UDI A;  2YFS A;  4EQV A;  5FMB A;  3BYK A;  5FK8 A;  3VT0 A;  3LDK A;  3WMZ A;  1GYD B;  4MLG A;  3RWK X;  2ADD A;  2AEY A;  5GLR A;  2EXI A;  3ZXJ A;  3P2N A;  5AYC A;  4U6D A;  4NOV A;  3WN0 A;  4QQS A;  1W18 A;  5FKB A;  3VSZ A;  3OM5 A;  3WPZ A;  3K1U A;  3R4Z A;  5B6S A;  4AK5 A;  4N2R A;  1PT2 A;  3OM2 A;  5GLM A;  5GLP A;  3UGH A;  3OM4 A;  3QZ4 A;  3AKF A;  3BYN A;  4UDK E;  3D5Z A;  2EXK A;  1YI7 A;  3QEF A;  5JOY A;  3C2U A;  2EXH A;  2EXJ A;  3WAT A;  1WL7 A;  5AYD A;  1TL2 A;  4FFG A;  2X8F A;  4FFF A;  3QC2 A;  5ANN A;  5A7V A;  5AYE A;  5GLN A;  3C7O A;  4FFH A;  4KC8 A;  4FFI A;  3R4Y A;  3LDR A;  4O8O A;  3VSR A;  3LIH A;  5FMD A;  3C7F A;  5GLK A;  5GLO A;  3KF5 A;  3VT1 A;  5AY9 A;  5C2M A;  5FLW A;  4N2Z A;  4N1I A;  2YFR A;  3VSS A;  4KCA A;  3C7H A;  3TAW A;  4UDJ A;  3WN2 A;  3KF3 A;  5JOW A;  3PIG A;  3LFI A;  1GYE B;  4KC7 A;  1Y9G A;  3QED A;  2QQW A;  5FK7 A;  3OM7 A;  3AKG A;  5A7V B;  4PVI A;  3OM6 A;  3QEE A;  2X8T A;  3LF7 A;  5GLQ A;  4U6B A;  2OXB A;  1YIF A;  3UGF A;  3LEM A;  3AKI A;  3WAU A;  5JOZ A;  5FIX A;  3C7E A;  2VDT A;  2ADE A;  4UDK A;  4N4B A;  3PIJ A;  4COT A;  3VT2 A;  4AK6 A;  2B4W A;  3WAS A;  4UDG A;  3D5Y A;  3C7G A;  4O8P A;  5A8D A;  1Y4W A;  2QQV A;  5C0P A;  2X8S A;  5GLL A;  4AK7 A;  3NQH A;  4KMI A;  4ONZ A;  1Y9M A;  1OYG A;  3CU9 A;  2QQU A;  3ZXL A;  3LIG A;  4PVA A;  1Y7B A;  1YRZ A;  5FKC A;  3U75 A;  1W2T A;  3AKH A;  1GYH A;  4D47 A;  3U14 A;  2YFT A;  1UV4 A;  3BYL A;  3SC7 X;  3VSF A;  2AC1 A;  3BYJ A;  5FMC A;  3ZXK A;  2AEZ A;  3D61 A;  3D60 A;  3WPU A;  4KCB A;  3WMY A;  1ST8 A;  5JOX A;  3KST A;  3WN1 A;  5A8C A;  3R67 A;  3WPY A;  5B6T A;  1UYP A;  3LV4 A;  3UGG A;  4O8N A;  2XQR A;  3WPV A; 
#chains in the Genus database with same CATH homology
 1VKD A;  4UDI A;  2YFS A;  4EQV A;  5FMB A;  3BYK A;  5FK8 A;  3VT0 A;  3LDK A;  3WMZ A;  1GYD B;  4MLG A;  3RWK X;  2ADD A;  2AEY A;  5GLR A;  2EXI A;  3ZXJ A;  3P2N A;  5AYC A;  4U6D A;  4NOV A;  3WN0 A;  4QQS A;  1W18 A;  5FKB A;  3VSZ A;  3OM5 A;  3WPZ A;  3K1U A;  3R4Z A;  5B6S A;  4AK5 A;  4N2R A;  1PT2 A;  3OM2 A;  5GLM A;  5GLP A;  3UGH A;  3OM4 A;  3QZ4 A;  3AKF A;  3BYN A;  4UDK E;  3D5Z A;  2EXK A;  1YI7 A;  3QEF A;  5JOY A;  3C2U A;  2EXH A;  2EXJ A;  3WAT A;  1WL7 A;  5AYD A;  4FFG A;  2X8F A;  4FFF A;  3QC2 A;  5ANN A;  5A7V A;  5AYE A;  5GLN A;  3C7O A;  4FFH A;  4KC8 A;  4FFI A;  3R4Y A;  3LDR A;  4O8O A;  3VSR A;  3LIH A;  5FMD A;  3C7F A;  5GLK A;  5GLO A;  3KF5 A;  3VT1 A;  5AY9 A;  5FLW A;  4N2Z A;  4N1I A;  2YFR A;  3VSS A;  4KCA A;  3C7H A;  3TAW A;  4UDJ A;  3WN2 A;  3KF3 A;  5JOW A;  3PIG A;  3LFI A;  1GYE B;  4KC7 A;  1Y9G A;  3QED A;  2QQW A;  5FK7 A;  3OM7 A;  3AKG A;  5A7V B;  4PVI A;  3OM6 A;  3QEE A;  2X8T A;  3LF7 A;  5GLQ A;  4U6B A;  2OXB A;  1YIF A;  3UGF A;  3LEM A;  3AKI A;  3WAU A;  5JOZ A;  5FIX A;  3C7E A;  2VDT A;  2ADE A;  4UDK A;  4N4B A;  3PIJ A;  4COT A;  3VT2 A;  4AK6 A;  2B4W A;  3WAS A;  4UDG A;  3D5Y A;  3C7G A;  4O8P A;  5A8D A;  1Y4W A;  2QQV A;  5C0P A;  2X8S A;  5GLL A;  4AK7 A;  3NQH A;  4KMI A;  4ONZ A;  1Y9M A;  1OYG A;  3CU9 A;  2QQU A;  3ZXL A;  3LIG A;  4PVA A;  1Y7B A;  1YRZ A;  5FKC A;  3U75 A;  1W2T A;  3AKH A;  1GYH A;  4D47 A;  3U14 A;  2YFT A;  1UV4 A;  3BYL A;  3SC7 X;  3VSF A;  2AC1 A;  3BYJ A;  5FMC A;  3ZXK A;  2AEZ A;  3D61 A;  3D60 A;  3WPU A;  4KCB A;  3WMY A;  1ST8 A;  5JOX A;  3KST A;  3WN1 A;  5A8C A;  3R67 A;  3WPY A;  5B6T A;  1UYP A;  3LV4 A;  3UGG A;  4O8N A;  2XQR A;  3WPV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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