4UI1A

Crystal structure of the human rgmc-bmp2 complex
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
104
Chain Sequence
KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords BONE MORPHOGENETIC PROTEIN 2
publication title Repulsive Guidance Molecule is a Structural Bridge between Neogenin and Bone Morphogenetic Protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 4ui1A00
1BJ1V 1HD4A 1JPYA 1M4UL 1SG1A 5HI3A 1E9JA 3BK3A 1ES7A 1HRPA 1NT3A 1TZHV 3KFDA 4AY9B 4QCIC 1TZIV 2H64A 3E07A 4ZFFC 1NYUB 1VPPV 2V5EB 2PJYA 4UHZA 2XACA 4EFVA 5JZ7A 5FV1V 2FJHV 4UI0A 1TGKA 5BQ8A 1WQ9A 5HHCA 4YCGC 4EC7A 2VXSA 5HI5A 4LXRJ 1KATW 2GYZA 2FJGV 1FL7B 2VPFA 1MJVA 1BNDB 4KV5A 1HCNB 4MQWA 1RV6V 2R52A 4HQXA 5BQCA 1B8KA 2GOOA 3EO1C 5AEJA 1MKKA 2ARVA 1BTGA 5FV2V 5BQEB 1B98A 3MJKA 4KXZA 4YCIC 1FLTV 2X1XE 1WWWV 2QR0C 4AY9A 2KD3A 2BHKA 5HK5E 1XWDA 1AGQA 2P6AA 4N1DA 1KLAA 1B8MB 2R53A 1QFWA 1DZ7A 2VWEA 4QHUC 5F3BC 1LX5A 1HRPB 2GYRA 1BETA 2TGIA 3FUBB 2C7WA 2GNNA 1LXIA 1WQ8A 3V6BA 4HSAA 1ZKZA 2ASKA 4LXSJ 4FAOA 4HQUA 1CZ8V 3P9WA 3QB4A 5E4GA 1QTYR 2IFGE 5HHVA 5HI4A 4EDXV 4MPLA 1AOCA 2QCQA 3HH2A 2QJBA 4MIDA 2ARPA 1VPFA 1BMPA 4GLSE 4KZNA 3JVFA 3V2AA 2QJ9A 4GLNE 4EAXA 3S1BV 3MJGA 3RJRA 2XV7A 4MQWB 1REUA 1PDGA 4UI2B 1TGJA 1REWA 4BV4L 2GH0C 4ZBNA 5BQ8D 1M4UA 1FZVA 3IJ2A 5BQBA 3S1KV 3SEKB 3B4VA 3EVSB 3BDYV 1WAQA 1XWDB 2X1WA 4QAFC 3BUKA 5HHDA 1S4YB 1HCFA 1FL7A 3QTKA 1MKGA 1WQ9B 1BNDA 1NYSB 1HCNA 1QFWB 5BQ8B 4UHYA 5HHXA 4WPBA 1SGFB 4HR9A 5BQEA 2QCWA 3BMPA 1KTZA 4X1JA 5BPUA 4EDWV 4XPJA 2QJAA 2H62A 5F3HI 1KLCA 1B8MA 5HK5A 2B0UA 1TFGA 4UI1A
chains in the Genus database with same CATH superfamily
1BJ1V 1HD4A 1JPYA 1M4UL 1SG1A 5HI3A 1E9JA 3BK3A 1ES7A 1HRPA 1NT3A 1TZHV 3KFDA 4AY9B 4QCIC 1TZIV 2H64A 3E07A 4ZFFC 1NYUB 1VPPV 2V5EB 2PJYA 4UHZA 2XACA 4EFVA 5JZ7A 5FV1V 2FJHV 4UI0A 1TGKA 5BQ8A 1WQ9A 5HHCA 4YCGC 4EC7A 2VXSA 5HI5A 4LXRJ 1KATW 2GYZA 2FJGV 1FL7B 2VPFA 1MJVA 1BNDB 4KV5A 1HCNB 4MQWA 1RV6V 2R52A 4HQXA 5BQCA 1B8KA 2GOOA 3EO1C 5AEJA 1MKKA 2ARVA 1BTGA 5FV2V 5BQEB 1B98A 3MJKA 4KXZA 4YCIC 1FLTV 2X1XE 1WWWV 2QR0C 4AY9A 2KD3A 2BHKA 5HK5E 1XWDA 1AGQA 2P6AA 4N1DA 1KLAA 1B8MB 2R53A 1QFWA 1DZ7A 2VWEA 4QHUC 5F3BC 1LX5A 1HRPB 2GYRA 1BETA 2TGIA 3FUBB 2C7WA 2GNNA 1LXIA 1WQ8A 3V6BA 4HSAA 1ZKZA 2ASKA 4LXSJ 4FAOA 4HQUA 1CZ8V 3P9WA 3QB4A 5E4GA 1QTYR 2IFGE 5HHVA 5HI4A 4EDXV 4MPLA 1AOCA 2QCQA 3HH2A 2QJBA 4MIDA 2ARPA 1VPFA 1BMPA 4GLSE 4KZNA 3JVFA 3V2AA 2QJ9A 4GLNE 4EAXA 3S1BV 3MJGA 3RJRA 2XV7A 4MQWB 1REUA 1PDGA 4UI2B 1TGJA 1REWA 4BV4L 2GH0C 4ZBNA 5BQ8D 1M4UA 1FZVA 3IJ2A 5BQBA 3S1KV 3SEKB 3B4VA 3EVSB 3BDYV 1WAQA 1XWDB 2X1WA 4QAFC 3BUKA 5HHDA 1S4YB 1HCFA 1FL7A 3QTKA 1MKGA 1WQ9B 1BNDA 1NYSB 1HCNA 1QFWB 5BQ8B 4UHYA 5HHXA 4WPBA 1SGFB 4HR9A 5BQEA 2QCWA 3BMPA 1KTZA 4X1JA 5BPUA 4EDWV 4XPJA 2QJAA 2H62A 5F3HI 1KLCA 1B8MA 5HK5A 2B0UA 1TFGA 4UI1A
chains in the Genus database with same CATH topology
1BJ1V 1HD4A 1JPYA 1M4UL 1SG1A 5HI3A 1E9JA 3BK3A 1ES7A 1HRPA 1NT3A 1TZHV 3KFDA 4AY9B 4QCIC 1TZIV 2H64A 3E07A 4ZFFC 1NYUB 1VPPV 2V5EB 2PJYA 4UHZA 2XACA 4EFVA 5JZ7A 5FV1V 2FJHV 4UI0A 1TGKA 5BQ8A 1WQ9A 5HHCA 4YCGC 4EC7A 2VXSA 5HI5A 4LXRJ 1KATW 2GYZA 2FJGV 1FL7B 2VPFA 1MJVA 1BNDB 4KV5A 1HCNB 4MQWA 1RV6V 2R52A 4HQXA 5BQCA 1B8KA 2GOOA 3EO1C 5AEJA 1MKKA 2ARVA 1BTGA 5FV2V 5BQEB 1B98A 3MJKA 4KXZA 4YCIC 1FLTV 2X1XE 1WWWV 2QR0C 4AY9A 2KD3A 2BHKA 5HK5E 1XWDA 1AGQA 2P6AA 4N1DA 1KLAA 1B8MB 2R53A 1QFWA 1DZ7A 2VWEA 4QHUC 5F3BC 1LX5A 1HRPB 2GYRA 1BETA 2TGIA 3FUBB 2C7WA 2GNNA 1LXIA 1WQ8A 3V6BA 4HSAA 1ZKZA 2ASKA 4LXSJ 4FAOA 4HQUA 1CZ8V 3P9WA 3QB4A 5E4GA 1QTYR 2IFGE 5HHVA 5HI4A 4EDXV 4MPLA 1AOCA 2QCQA 3HH2A 2QJBA 4MIDA 2ARPA 1VPFA 1BMPA 4GLSE 4KZNA 3JVFA 3V2AA 2QJ9A 4GLNE 4EAXA 3S1BV 3MJGA 3RJRA 2XV7A 4MQWB 1REUA 1PDGA 4UI2B 1TGJA 1REWA 4BV4L 2GH0C 4ZBNA 5BQ8D 1M4UA 1FZVA 3IJ2A 5BQBA 3S1KV 3SEKB 3B4VA 3EVSB 3BDYV 1WAQA 1XWDB 2X1WA 4QAFC 3BUKA 5HHDA 1S4YB 1HCFA 1FL7A 3QTKA 1MKGA 1WQ9B 1BNDA 1NYSB 1HCNA 1QFWB 5BQ8B 4UHYA 5HHXA 4WPBA 1SGFB 4HR9A 5BQEA 2QCWA 3BMPA 1KTZA 4X1JA 5BPUA 4EDWV 4XPJA 2QJAA 2H62A 5F3HI 1KLCA 1B8MA 5HK5A 2B0UA 1TFGA 4UI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BJ1 V;  1HD4 A;  1JPY A;  1M4U L;  1SG1 A;  5HI3 A;  1E9J A;  3BK3 A;  1ES7 A;  1HRP A;  1NT3 A;  1TZH V;  3KFD A;  4AY9 B;  4QCI C;  1TZI V;  2H64 A;  3E07 A;  4ZFF C;  1NYU B;  1VPP V;  2V5E B;  2PJY A;  4UHZ A;  2XAC A;  4EFV A;  5JZ7 A;  5FV1 V;  2FJH V;  4UI0 A;  1TGK A;  5BQ8 A;  1WQ9 A;  5HHC A;  4YCG C;  4EC7 A;  2VXS A;  5HI5 A;  4LXR J;  1KAT W;  2GYZ A;  2FJG V;  1FL7 B;  2VPF A;  1MJV A;  1BND B;  4KV5 A;  1HCN B;  4MQW A;  1RV6 V;  2R52 A;  4HQX A;  5BQC A;  1B8K A;  2GOO A;  3EO1 C;  5AEJ A;  1MKK A;  2ARV A;  1BTG A;  5FV2 V;  5BQE B;  1B98 A;  3MJK A;  4KXZ A;  4YCI C;  1FLT V;  2X1X E;  1WWW V;  2QR0 C;  4AY9 A;  2KD3 A;  2BHK A;  5HK5 E;  1XWD A;  1AGQ A;  2P6A A;  4N1D A;  1KLA A;  1B8M B;  2R53 A;  1QFW A;  1DZ7 A;  2VWE A;  4QHU C;  5F3B C;  1LX5 A;  1HRP B;  2GYR A;  1BET A;  2TGI A;  3FUB B;  2C7W A;  2GNN A;  1LXI A;  1WQ8 A;  3V6B A;  4HSA A;  1ZKZ A;  2ASK A;  4LXS J;  4FAO A;  4HQU A;  1CZ8 V;  3P9W A;  3QB4 A;  5E4G A;  1QTY R;  2IFG E;  5HHV A;  5HI4 A;  4EDX V;  4MPL A;  1AOC A;  2QCQ A;  3HH2 A;  2QJB A;  4MID A;  2ARP A;  1VPF A;  1BMP A;  4GLS E;  4KZN A;  3JVF A;  3V2A A;  2QJ9 A;  4GLN E;  4EAX A;  3S1B V;  3MJG A;  3RJR A;  2XV7 A;  4MQW B;  1REU A;  1PDG A;  4UI2 B;  1TGJ A;  1REW A;  4BV4 L;  2GH0 C;  4ZBN A;  5BQ8 D;  1M4U A;  1FZV A;  3IJ2 A;  5BQB A;  3S1K V;  3SEK B;  3B4V A;  3EVS B;  3BDY V;  1WAQ A;  1XWD B;  2X1W A;  4QAF C;  3BUK A;  5HHD A;  1S4Y B;  1HCF A;  1FL7 A;  3QTK A;  1MKG A;  1WQ9 B;  1BND A;  1NYS B;  1HCN A;  1QFW B;  5BQ8 B;  4UHY A;  5HHX A;  4WPB A;  1SGF B;  4HR9 A;  5BQE A;  2QCW A;  3BMP A;  1KTZ A;  4X1J A;  5BPU A;  4EDW V;  4XPJ A;  2QJA A;  2H62 A;  5F3H I;  1KLC A;  1B8M A;  5HK5 A;  2B0U A;  1TFG A;  4UI1 A; 
#chains in the Genus database with same CATH topology
 1BJ1 V;  1HD4 A;  1JPY A;  1M4U L;  1SG1 A;  5HI3 A;  1E9J A;  3BK3 A;  1ES7 A;  1HRP A;  1NT3 A;  1TZH V;  3KFD A;  4AY9 B;  4QCI C;  1TZI V;  2H64 A;  3E07 A;  4ZFF C;  1NYU B;  1VPP V;  2V5E B;  2PJY A;  4UHZ A;  2XAC A;  4EFV A;  5JZ7 A;  5FV1 V;  2FJH V;  4UI0 A;  1TGK A;  5BQ8 A;  1WQ9 A;  5HHC A;  4YCG C;  4EC7 A;  2VXS A;  5HI5 A;  4LXR J;  1KAT W;  2GYZ A;  2FJG V;  1FL7 B;  2VPF A;  1MJV A;  1BND B;  4KV5 A;  1HCN B;  4MQW A;  1RV6 V;  2R52 A;  4HQX A;  5BQC A;  1B8K A;  2GOO A;  3EO1 C;  5AEJ A;  1MKK A;  2ARV A;  1BTG A;  5FV2 V;  5BQE B;  1B98 A;  3MJK A;  4KXZ A;  4YCI C;  1FLT V;  2X1X E;  1WWW V;  2QR0 C;  4AY9 A;  2KD3 A;  2BHK A;  5HK5 E;  1XWD A;  1AGQ A;  2P6A A;  4N1D A;  1KLA A;  1B8M B;  2R53 A;  1QFW A;  1DZ7 A;  2VWE A;  4QHU C;  5F3B C;  1LX5 A;  1HRP B;  2GYR A;  1BET A;  2TGI A;  3FUB B;  2C7W A;  2GNN A;  1LXI A;  1WQ8 A;  3V6B A;  4HSA A;  1ZKZ A;  2ASK A;  4LXS J;  4FAO A;  4HQU A;  1CZ8 V;  3P9W A;  3QB4 A;  5E4G A;  1QTY R;  2IFG E;  5HHV A;  5HI4 A;  4EDX V;  4MPL A;  1AOC A;  2QCQ A;  3HH2 A;  2QJB A;  4MID A;  2ARP A;  1VPF A;  1BMP A;  4GLS E;  4KZN A;  3JVF A;  3V2A A;  2QJ9 A;  4GLN E;  4EAX A;  3S1B V;  3MJG A;  3RJR A;  2XV7 A;  4MQW B;  1REU A;  1PDG A;  4UI2 B;  1TGJ A;  1REW A;  4BV4 L;  2GH0 C;  4ZBN A;  5BQ8 D;  1M4U A;  1FZV A;  3IJ2 A;  5BQB A;  3S1K V;  3SEK B;  3B4V A;  3EVS B;  3BDY V;  1WAQ A;  1XWD B;  2X1W A;  4QAF C;  3BUK A;  5HHD A;  1S4Y B;  1HCF A;  1FL7 A;  3QTK A;  1MKG A;  1WQ9 B;  1BND A;  1NYS B;  1HCN A;  1QFW B;  5BQ8 B;  4UHY A;  5HHX A;  4WPB A;  1SGF B;  4HR9 A;  5BQE A;  2QCW A;  3BMP A;  1KTZ A;  4X1J A;  5BPU A;  4EDW V;  4XPJ A;  2QJA A;  2H62 A;  5F3H I;  1KLC A;  1B8M A;  5HK5 A;  2B0U A;  1TFG A;  4UI1 A; 
#chains in the Genus database with same CATH homology
 1BJ1 V;  1HD4 A;  1JPY A;  1M4U L;  1SG1 A;  5HI3 A;  1E9J A;  3BK3 A;  1ES7 A;  1HRP A;  1NT3 A;  1TZH V;  3KFD A;  4AY9 B;  4QCI C;  1TZI V;  2H64 A;  3E07 A;  4ZFF C;  1NYU B;  1VPP V;  2V5E B;  2PJY A;  4UHZ A;  2XAC A;  4EFV A;  5JZ7 A;  5FV1 V;  2FJH V;  4UI0 A;  1TGK A;  5BQ8 A;  1WQ9 A;  5HHC A;  4YCG C;  4EC7 A;  2VXS A;  5HI5 A;  4LXR J;  1KAT W;  2GYZ A;  2FJG V;  1FL7 B;  2VPF A;  1MJV A;  1BND B;  4KV5 A;  1HCN B;  4MQW A;  1RV6 V;  2R52 A;  4HQX A;  5BQC A;  1B8K A;  2GOO A;  3EO1 C;  5AEJ A;  1MKK A;  2ARV A;  1BTG A;  5FV2 V;  5BQE B;  1B98 A;  3MJK A;  4KXZ A;  4YCI C;  1FLT V;  2X1X E;  1WWW V;  2QR0 C;  4AY9 A;  2KD3 A;  2BHK A;  5HK5 E;  1XWD A;  1AGQ A;  2P6A A;  4N1D A;  1KLA A;  1B8M B;  2R53 A;  1QFW A;  1DZ7 A;  2VWE A;  4QHU C;  5F3B C;  1LX5 A;  1HRP B;  2GYR A;  1BET A;  2TGI A;  3FUB B;  2C7W A;  2GNN A;  1LXI A;  1WQ8 A;  3V6B A;  4HSA A;  1ZKZ A;  2ASK A;  4LXS J;  4FAO A;  4HQU A;  1CZ8 V;  3P9W A;  3QB4 A;  5E4G A;  1QTY R;  2IFG E;  5HHV A;  5HI4 A;  4EDX V;  4MPL A;  1AOC A;  2QCQ A;  3HH2 A;  2QJB A;  4MID A;  2ARP A;  1VPF A;  1BMP A;  4GLS E;  4KZN A;  3JVF A;  3V2A A;  2QJ9 A;  4GLN E;  4EAX A;  3S1B V;  3MJG A;  3RJR A;  2XV7 A;  4MQW B;  1REU A;  1PDG A;  4UI2 B;  1TGJ A;  1REW A;  4BV4 L;  2GH0 C;  4ZBN A;  5BQ8 D;  1M4U A;  1FZV A;  3IJ2 A;  5BQB A;  3S1K V;  3SEK B;  3B4V A;  3EVS B;  3BDY V;  1WAQ A;  1XWD B;  2X1W A;  4QAF C;  3BUK A;  5HHD A;  1S4Y B;  1HCF A;  1FL7 A;  3QTK A;  1MKG A;  1WQ9 B;  1BND A;  1NYS B;  1HCN A;  1QFW B;  5BQ8 B;  4UHY A;  5HHX A;  4WPB A;  1SGF B;  4HR9 A;  5BQE A;  2QCW A;  3BMP A;  1KTZ A;  4X1J A;  5BPU A;  4EDW V;  4XPJ A;  2QJA A;  2H62 A;  5F3H I;  1KLC A;  1B8M A;  5HK5 A;  2B0U A;  1TFG A;  4UI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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