4UNCA

The crystal structure of i-dmoi in complex with its target dna at 8 days incubation in 5mm mn (state 6)
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
181
structure length
181
Chain Sequence
VSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords HOMING ENDONUCLEASE I-DMOI
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
source organism Desulfurococcus mobilis
total genus 54
structure length 181
sequence length 181
chains with identical sequence D, G
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4uncA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4uncA02
1B24A 4AADA 3KO2A 4EFJA 3C0WA 2DCHX 2VS7A 2XE0A 2CW8A 5AKNA 2VBNA 2CW7A 4Z1ZA 1DQ3A 2VBOA 4UN8A 1R7MA 4Z1XA 4LOXA 3MXBA 1T9IA 1MOWA 5A0MB 3EH8A 1N3FA 1U0DA 1U0CA 2VS8A 4UN9G 4D6OA 4LQ0A 2XE0B 2VBNB 3OORA 4AAGA 1G9YA 2VBOB 5E63A 3MXBB 5E5SA 1DFAA 2VBLA 1BP7A 5E67A 4AABA 4UNCA 1UM2A 2EX5A 5A78A 2I3PA 1EF0A 4YITA 3R7PA 4AQUA 3QQYA 5A77A 2QOJZ 1M5XA 4AAFA 1P8KZ 3MIPA 5A74A 4UN9A 1JVAA 3MX9A 3MISA 3UVFA 2AB5A 5AKMA 4UNBA 3FD2A 4UT0A 1AF5A 4UNAA 5AK9A 4D6NA 3C0XA 5A0MA 2VBJA 3E54A 2FLDA 4Z20A 3HYIA 5AKFA 5A0WA 4YISA 2VBLB 4YHXA 2I3QA 4UN7G 1T9JA 2O7MA 5E5OA 4UN8G 3OOLA 5A72A 4UN7A 4AAEA 1LWTA 1G9ZA 3MXAA 3HYJA 1VDEA 2VBJB 1LWSA 4AQXA 1N3EA
chains in the Genus database with same CATH superfamily
1B24A 4AADA 3KO2A 4EFJA 3C0WA 2DCHX 2VS7A 2XE0A 2CW8A 5AKNA 2VBNA 2CW7A 4Z1ZA 1DQ3A 2VBOA 4UN8A 1R7MA 4Z1XA 4LOXA 3MXBA 1T9IA 1MOWA 5A0MB 3EH8A 1N3FA 1U0DA 1U0CA 2F4LA 2VS8A 4UN9G 4D6OA 4LQ0A 2XE0B 2VBNB 3OORA 4AAGA 1G9YA 2VBOB 5E63A 3MXBB 5E5SA 1DFAA 2VBLA 1BP7A 5E67A 4AABA 4UNCA 1UM2A 2EX5A 5A78A 2I3PA 1EF0A 4YITA 3R7PA 4AQUA 3QQYA 5A77A 2QOJZ 1M5XA 4AAFA 1P8KZ 3MIPA 5A74A 4UN9A 1JVAA 3MX9A 3MISA 3UVFA 2AB5A 5AKMA 4UNBA 3FD2A 4UT0A 1AF5A 4UNAA 4KZSA 5AK9A 4D6NA 3C0XA 5A0MA 2VBJA 3E54A 2FLDA 4Z20A 3HYIA 5AKFA 5A0WA 4YISA 2VBLB 4YHXA 2I3QA 4UN7G 1T9JA 2O7MA 5E5OA 4UN8G 3OOLA 5A72A 4UN7A 4AAEA 1LWTA 1G9ZA 3MXAA 3HYJA 1VDEA 2VBJB 1LWSA 4AQXA 1N3EA
chains in the Genus database with same CATH topology
1B24A 4AADA 3KO2A 4EFJA 3C0WA 2DCHX 2VS7A 2XE0A 2CW8A 5AKNA 2VBNA 2CW7A 4Z1ZA 1DQ3A 2VBOA 4UN8A 1R7MA 4Z1XA 4LOXA 3MXBA 1T9IA 1MOWA 5A0MB 3EH8A 1N3FA 1U0DA 1U0CA 2VS8A 4UN9G 4D6OA 4LQ0A 2XE0B 2VBNB 3OORA 4AAGA 1G9YA 2VBOB 5E63A 3MXBB 5E5SA 1DFAA 2VBLA 1BP7A 5E67A 4AABA 4UNCA 1UM2A 2EX5A 5A78A 2I3PA 1EF0A 4YITA 3R7PA 4AQUA 3QQYA 5A77A 2QOJZ 1M5XA 4AAFA 1P8KZ 3MIPA 5A74A 4UN9A 1JVAA 3MX9A 3MISA 3UVFA 2AB5A 5AKMA 4UNBA 3FD2A 4UT0A 1AF5A 4UNAA 5AK9A 4D6NA 3C0XA 5A0MA 2VBJA 3E54A 2FLDA 4Z20A 3HYIA 5AKFA 5A0WA 4YISA 2VBLB 4YHXA 2I3QA 4UN7G 1T9JA 2O7MA 5E5OA 4UN8G 3OOLA 5A72A 4UN7A 4AAEA 1LWTA 1G9ZA 3MXAA 3HYJA 1VDEA 2VBJB 1LWSA 4AQXA 1N3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B24 A;  4AAD A;  3KO2 A;  4EFJ A;  3C0W A;  2DCH X;  2VS7 A;  2XE0 A;  2CW8 A;  5AKN A;  2VBN A;  2CW7 A;  4Z1Z A;  1DQ3 A;  2VBO A;  4UN8 A;  1R7M A;  4Z1X A;  4LOX A;  3MXB A;  1T9I A;  1MOW A;  5A0M B;  3EH8 A;  1N3F A;  1U0D A;  1U0C A;  2VS8 A;  4UN9 G;  4D6O A;  4LQ0 A;  2XE0 B;  2VBN B;  3OOR A;  4AAG A;  1G9Y A;  2VBO B;  5E63 A;  3MXB B;  5E5S A;  1DFA A;  2VBL A;  1BP7 A;  5E67 A;  4AAB A;  4UNC A;  1UM2 A;  2EX5 A;  5A78 A;  2I3P A;  1EF0 A;  4YIT A;  3R7P A;  4AQU A;  3QQY A;  5A77 A;  2QOJ Z;  1M5X A;  4AAF A;  1P8K Z;  3MIP A;  5A74 A;  4UN9 A;  1JVA A;  3MX9 A;  3MIS A;  3UVF A;  2AB5 A;  5AKM A;  4UNB A;  3FD2 A;  4UT0 A;  1AF5 A;  4UNA A;  5AK9 A;  4D6N A;  3C0X A;  5A0M A;  2VBJ A;  3E54 A;  2FLD A;  4Z20 A;  3HYI A;  5AKF A;  5A0W A;  4YIS A;  2VBL B;  4YHX A;  2I3Q A;  4UN7 G;  1T9J A;  2O7M A;  5E5O A;  4UN8 G;  3OOL A;  5A72 A;  4UN7 A;  4AAE A;  1LWT A;  1G9Z A;  3MXA A;  3HYJ A;  1VDE A;  2VBJ B;  1LWS A;  4AQX A;  1N3E A; 
#chains in the Genus database with same CATH topology
 1B24 A;  4AAD A;  3KO2 A;  4EFJ A;  3C0W A;  2DCH X;  2VS7 A;  2XE0 A;  2CW8 A;  5AKN A;  2VBN A;  2CW7 A;  4Z1Z A;  1DQ3 A;  2VBO A;  4UN8 A;  1R7M A;  4Z1X A;  4LOX A;  3MXB A;  1T9I A;  1MOW A;  5A0M B;  3EH8 A;  1N3F A;  1U0D A;  1U0C A;  2F4L A;  2VS8 A;  4UN9 G;  4D6O A;  4LQ0 A;  2XE0 B;  2VBN B;  3OOR A;  4AAG A;  1G9Y A;  2VBO B;  5E63 A;  3MXB B;  5E5S A;  1DFA A;  2VBL A;  1BP7 A;  5E67 A;  4AAB A;  4UNC A;  1UM2 A;  2EX5 A;  5A78 A;  2I3P A;  1EF0 A;  4YIT A;  3R7P A;  4AQU A;  3QQY A;  5A77 A;  2QOJ Z;  1M5X A;  4AAF A;  1P8K Z;  3MIP A;  5A74 A;  4UN9 A;  1JVA A;  3MX9 A;  3MIS A;  3UVF A;  2AB5 A;  5AKM A;  4UNB A;  3FD2 A;  4UT0 A;  1AF5 A;  4UNA A;  4KZS A;  5AK9 A;  4D6N A;  3C0X A;  5A0M A;  2VBJ A;  3E54 A;  2FLD A;  4Z20 A;  3HYI A;  5AKF A;  5A0W A;  4YIS A;  2VBL B;  4YHX A;  2I3Q A;  4UN7 G;  1T9J A;  2O7M A;  5E5O A;  4UN8 G;  3OOL A;  5A72 A;  4UN7 A;  4AAE A;  1LWT A;  1G9Z A;  3MXA A;  3HYJ A;  1VDE A;  2VBJ B;  1LWS A;  4AQX A;  1N3E A; 
#chains in the Genus database with same CATH homology
 1B24 A;  4AAD A;  3KO2 A;  4EFJ A;  3C0W A;  2DCH X;  2VS7 A;  2XE0 A;  2CW8 A;  5AKN A;  2VBN A;  2CW7 A;  4Z1Z A;  1DQ3 A;  2VBO A;  4UN8 A;  1R7M A;  4Z1X A;  4LOX A;  3MXB A;  1T9I A;  1MOW A;  5A0M B;  3EH8 A;  1N3F A;  1U0D A;  1U0C A;  2VS8 A;  4UN9 G;  4D6O A;  4LQ0 A;  2XE0 B;  2VBN B;  3OOR A;  4AAG A;  1G9Y A;  2VBO B;  5E63 A;  3MXB B;  5E5S A;  1DFA A;  2VBL A;  1BP7 A;  5E67 A;  4AAB A;  4UNC A;  1UM2 A;  2EX5 A;  5A78 A;  2I3P A;  1EF0 A;  4YIT A;  3R7P A;  4AQU A;  3QQY A;  5A77 A;  2QOJ Z;  1M5X A;  4AAF A;  1P8K Z;  3MIP A;  5A74 A;  4UN9 A;  1JVA A;  3MX9 A;  3MIS A;  3UVF A;  2AB5 A;  5AKM A;  4UNB A;  3FD2 A;  4UT0 A;  1AF5 A;  4UNA A;  5AK9 A;  4D6N A;  3C0X A;  5A0M A;  2VBJ A;  3E54 A;  2FLD A;  4Z20 A;  3HYI A;  5AKF A;  5A0W A;  4YIS A;  2VBL B;  4YHX A;  2I3Q A;  4UN7 G;  1T9J A;  2O7M A;  5E5O A;  4UN8 G;  3OOL A;  5A72 A;  4UN7 A;  4AAE A;  1LWT A;  1G9Z A;  3MXA A;  3HYJ A;  1VDE A;  2VBJ B;  1LWS A;  4AQX A;  1N3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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