4UNFA

Crystal structure of deinococcus radiodurans endonuclease iii-1
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
236
structure length
236
Chain Sequence
APLNAARPAEERAALLAWVKERLHEEYGDQDPTPRRDPMHELISTILSQRTTHADEEAAYQELRTLGDWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGVIPRMGEQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTRPKCGKCILRERCDAYALYGDKVPSFS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords ENDONUCLEASE III-1
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans r1
molecule tags Lyase
total genus 86
structure length 236
sequence length 236
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4unfA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4unfA01
1PU8A 2NOZA 1KEAA 1MUYA 1DIZA 2XHIA 4B23A 2NOBA 3OH9A 1YQMA 1KG5A 1WEGA 1N39A 4OFAA 3CVTA 1YQLA 1ORPA 3IH7A 3F10A 1RRSA 4EA4A 2ABKA 4AI4A 3I0XA 2NOIA 1EBMA 1FN7A 1VRLA 1P7MA 4OFEA 4YPHA 2YG8A 2NOLA 1XQPA 4OFHA 1M3QA 2YG9A 2I5WA 1YQRA 4AIAA 4EW0A 1ORNA 2H56A 4UOBA 1KQJA 1LMZA 4EVVA 3D4VA 1LWWA 1KO9A 2NOEA 4EA5A 3CWTA 1KG6A 1NGNA 4PIIA 1P59A 3CWAA 3I0WA 4E9EA 1KG4A 3IHOA 1RRQA 3S6IA 2OFKA 4HSBA 4DK9A 4EJZA 1PVSA 4UNFA 3G0QA 3KTUA 1XQOA 3OH6A 5DPKA 3OGDA 4B21A 2JHJA 1WEIA 1KG3A 2NOFA 3F0ZA 1N3CA 3FSPA 4YOQA 1KG7A 1LWVA 4AI5A 5KN9A 2JHNA 4B24A 3FHFA 2OFIA 1KG2A 3CWUA 1MPGA 4E9HA 2JG6A 4YPRA 3N5NX 4E9FA 1PU7A 4B22A 3FHGA 3KNTA 2NOHA 3CVSA 1HU0A 1LWYA 5AN4A 3N0UA 1YQKA 5CHZA 1PU6A 1WEFA 1NKUA 5KN8A 1N3AA 3CWSA 3CW7A 1MUNA 1MUDA 1XG7A 4E9GA 1M3HA 4EW4A 4EJYA
chains in the Genus database with same CATH superfamily
1PU8A 3OYHA 2NOZA 1KEAA 1MUYA 3S3MA 1DIZA 3OYDA 4NZGA 1U84A 2XHIA 2W03A 4B23A 2NOBA 3OH9A 3L2RA 1KG5A 4BACA 1YQMA 1WEGA 1N39A 3OYFA 4OFAA 4E7JA 3CVTA 3OY9A 1YQLA 1ORPA 3IH7A 3F10A 1RRSA 4E7HA 4EA4A 2ABKA 3NNQA 4E7KA 4AI4A 3OYJA 3I0XA 2NOIA 1EBMA 1FN7A 1VRLA 1P7MA 4OFEA 4YPHA 2YG8A 2NOLA 4ZTJA 1XQPA 4OFHA 1M3QA 2YG9A 2I5WA 4E7IA 1YQRA 4AIAA 3OYEA 4EW0A 1ORNA 3L2WA 2H56A 4UOBA 1KQJA 1LMZA 4EVVA 3D4VA 1LWWA 1KO9A 2NOEA 3OS0A 4EA5A 3CWTA 3OYNA 1KG6A 1NGNA 4PIIA 3OYBA 1P59A 3CWAA 3I0WA 3R2XC 4E9EA 1KG4A 3OYKA 3IHOA 1RRQA 3S3OA 3S6IA 2OFKA 4BE1A 3L2UA 3S3NA 4EJYA 4HSBA 4DK9A 3VW4A 1PVSA 4UNFA 4EJZA 3G0QA 5FRMA 3KTUA 1XQOA 3OYLA 3OH6A 3OGDA 5DPKA 4B21A 2JHJA 1WEIA 1KG3A 4BDYA 3OYGA 2NOFA 3F0ZA 1N3CA 4IKFA 3FSPA 4YOQA 1KG7A 1LWVA 4AI5A 5KN9A 2JHNA 4B24A 3FHFA 3OS1A 2OFIA 5FRNA 1KG2A 3CWUA 1MPGA 2V75A 4E9HA 2JG6A 4YPRA 3N5NX 4BE2A 1PU7A 4B22A 4E9FA 3FHGA 3KNTA 3OYMA 3CVSA 2NOHA 3OYIA 3LCNA 1HU0A 4BDZA 3OS2A 1LWYA 5AN4A 3N0UA 3L2QA 1YQKA 5CHZA 1PU6A 3L2VA 2JPSA 5FROA 1WEFA 1NKUA 5KN8A 1N3AA 4ZTFA 3CWSA 3CW7A 1MUNA 1MUDA 3OYAA 2W04A 4E7LA 1XG7A 4E9GA 1M3HA 4EW4A 4BE0A 3OYCA
chains in the Genus database with same CATH topology
1PU8A 2NOZA 1KEAA 1MUYA 1DIZA 2XHIA 4B23A 2NOBA 3OH9A 1YQMA 1KG5A 1WEGA 1N39A 4OFAA 3CVTA 1YQLA 1ORPA 3IH7A 3F10A 1RRSA 4EA4A 2ABKA 4AI4A 3I0XA 2NOIA 1EBMA 1FN7A 1VRLA 1P7MA 4OFEA 4YPHA 2YG8A 2NOLA 1XQPA 4OFHA 1M3QA 2YG9A 2I5WA 1YQRA 4AIAA 4EW0A 1ORNA 2H56A 4UOBA 1KQJA 1LMZA 4EVVA 3D4VA 1LWWA 1KO9A 2NOEA 4EA5A 3CWTA 1KG6A 1NGNA 4PIIA 1P59A 3CWAA 3I0WA 4E9EA 1KG4A 3IHOA 1RRQA 3S6IA 2OFKA 4HSBA 4DK9A 4EJZA 1PVSA 4UNFA 3G0QA 3KTUA 1XQOA 3OH6A 5DPKA 3OGDA 4B21A 2JHJA 1WEIA 1KG3A 2NOFA 3F0ZA 1N3CA 3FSPA 4YOQA 1KG7A 1LWVA 4AI5A 5KN9A 2JHNA 4B24A 3FHFA 2OFIA 1KG2A 3CWUA 1MPGA 4E9HA 2JG6A 4YPRA 3N5NX 4E9FA 1PU7A 4B22A 3FHGA 3KNTA 2NOHA 3CVSA 1HU0A 1LWYA 5AN4A 3N0UA 1YQKA 5CHZA 1PU6A 1WEFA 1NKUA 5KN8A 1N3AA 3CWSA 3CW7A 1MUNA 1MUDA 1XG7A 4E9GA 1M3HA 4EW4A 4EJYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PU8 A;  2NOZ A;  1KEA A;  1MUY A;  1DIZ A;  2XHI A;  4B23 A;  2NOB A;  3OH9 A;  1YQM A;  1KG5 A;  1WEG A;  1N39 A;  4OFA A;  3CVT A;  1YQL A;  1ORP A;  3IH7 A;  3F10 A;  1RRS A;  4EA4 A;  2ABK A;  4AI4 A;  3I0X A;  2NOI A;  1EBM A;  1FN7 A;  1VRL A;  1P7M A;  4OFE A;  4YPH A;  2YG8 A;  2NOL A;  1XQP A;  4OFH A;  1M3Q A;  2YG9 A;  2I5W A;  1YQR A;  4AIA A;  4EW0 A;  1ORN A;  2H56 A;  4UOB A;  1KQJ A;  1LMZ A;  4EVV A;  3D4V A;  1LWW A;  1KO9 A;  2NOE A;  4EA5 A;  3CWT A;  1KG6 A;  1NGN A;  4PII A;  1P59 A;  3CWA A;  3I0W A;  4E9E A;  1KG4 A;  3IHO A;  1RRQ A;  3S6I A;  2OFK A;  4HSB A;  4DK9 A;  4EJZ A;  1PVS A;  4UNF A;  3G0Q A;  3KTU A;  1XQO A;  3OH6 A;  5DPK A;  3OGD A;  4B21 A;  2JHJ A;  1WEI A;  1KG3 A;  2NOF A;  3F0Z A;  1N3C A;  3FSP A;  4YOQ A;  1KG7 A;  1LWV A;  4AI5 A;  5KN9 A;  2JHN A;  4B24 A;  3FHF A;  2OFI A;  1KG2 A;  3CWU A;  1MPG A;  4E9H A;  2JG6 A;  4YPR A;  3N5N X;  4E9F A;  1PU7 A;  4B22 A;  3FHG A;  3KNT A;  2NOH A;  3CVS A;  1HU0 A;  1LWY A;  5AN4 A;  3N0U A;  1YQK A;  5CHZ A;  1PU6 A;  1WEF A;  1NKU A;  5KN8 A;  1N3A A;  3CWS A;  3CW7 A;  1MUN A;  1MUD A;  1XG7 A;  4E9G A;  1M3H A;  4EW4 A;  4EJY A; 
#chains in the Genus database with same CATH topology
 1PU8 A;  3OYH A;  2NOZ A;  1KEA A;  1MUY A;  3S3M A;  1DIZ A;  3OYD A;  4NZG A;  1U84 A;  2XHI A;  2W03 A;  4B23 A;  2NOB A;  3OH9 A;  3L2R A;  1KG5 A;  4BAC A;  1YQM A;  1WEG A;  1N39 A;  3OYF A;  4OFA A;  4E7J A;  3CVT A;  3OY9 A;  1YQL A;  1ORP A;  3IH7 A;  3F10 A;  1RRS A;  4E7H A;  4EA4 A;  2ABK A;  3NNQ A;  4E7K A;  4AI4 A;  3OYJ A;  3I0X A;  2NOI A;  1EBM A;  1FN7 A;  1VRL A;  1P7M A;  4OFE A;  4YPH A;  2YG8 A;  2NOL A;  4ZTJ A;  1XQP A;  4OFH A;  1M3Q A;  2YG9 A;  2I5W A;  4E7I A;  1YQR A;  4AIA A;  3OYE A;  4EW0 A;  1ORN A;  3L2W A;  2H56 A;  4UOB A;  1KQJ A;  1LMZ A;  4EVV A;  3D4V A;  1LWW A;  1KO9 A;  2NOE A;  3OS0 A;  4EA5 A;  3CWT A;  3OYN A;  1KG6 A;  1NGN A;  4PII A;  3OYB A;  1P59 A;  3CWA A;  3I0W A;  3R2X C;  4E9E A;  1KG4 A;  3OYK A;  3IHO A;  1RRQ A;  3S3O A;  3S6I A;  2OFK A;  4BE1 A;  3L2U A;  3S3N A;  4EJY A;  4HSB A;  4DK9 A;  3VW4 A;  1PVS A;  4UNF A;  4EJZ A;  3G0Q A;  5FRM A;  3KTU A;  1XQO A;  3OYL A;  3OH6 A;  3OGD A;  5DPK A;  4B21 A;  2JHJ A;  1WEI A;  1KG3 A;  4BDY A;  3OYG A;  2NOF A;  3F0Z A;  1N3C A;  4IKF A;  3FSP A;  4YOQ A;  1KG7 A;  1LWV A;  4AI5 A;  5KN9 A;  2JHN A;  4B24 A;  3FHF A;  3OS1 A;  2OFI A;  5FRN A;  1KG2 A;  3CWU A;  1MPG A;  2V75 A;  4E9H A;  2JG6 A;  4YPR A;  3N5N X;  4BE2 A;  1PU7 A;  4B22 A;  4E9F A;  3FHG A;  3KNT A;  3OYM A;  3CVS A;  2NOH A;  3OYI A;  3LCN A;  1HU0 A;  4BDZ A;  3OS2 A;  1LWY A;  5AN4 A;  3N0U A;  3L2Q A;  1YQK A;  5CHZ A;  1PU6 A;  3L2V A;  2JPS A;  5FRO A;  1WEF A;  1NKU A;  5KN8 A;  1N3A A;  4ZTF A;  3CWS A;  3CW7 A;  1MUN A;  1MUD A;  3OYA A;  2W04 A;  4E7L A;  1XG7 A;  4E9G A;  1M3H A;  4EW4 A;  4BE0 A;  3OYC A; 
#chains in the Genus database with same CATH homology
 1PU8 A;  2NOZ A;  1KEA A;  1MUY A;  1DIZ A;  2XHI A;  4B23 A;  2NOB A;  3OH9 A;  1YQM A;  1KG5 A;  1WEG A;  1N39 A;  4OFA A;  3CVT A;  1YQL A;  1ORP A;  3IH7 A;  3F10 A;  1RRS A;  4EA4 A;  2ABK A;  4AI4 A;  3I0X A;  2NOI A;  1EBM A;  1FN7 A;  1VRL A;  1P7M A;  4OFE A;  4YPH A;  2YG8 A;  2NOL A;  1XQP A;  4OFH A;  1M3Q A;  2YG9 A;  2I5W A;  1YQR A;  4AIA A;  4EW0 A;  1ORN A;  2H56 A;  4UOB A;  1KQJ A;  1LMZ A;  4EVV A;  3D4V A;  1LWW A;  1KO9 A;  2NOE A;  4EA5 A;  3CWT A;  1KG6 A;  1NGN A;  4PII A;  1P59 A;  3CWA A;  3I0W A;  4E9E A;  1KG4 A;  3IHO A;  1RRQ A;  3S6I A;  2OFK A;  4HSB A;  4DK9 A;  4EJZ A;  1PVS A;  4UNF A;  3G0Q A;  3KTU A;  1XQO A;  3OH6 A;  5DPK A;  3OGD A;  4B21 A;  2JHJ A;  1WEI A;  1KG3 A;  2NOF A;  3F0Z A;  1N3C A;  3FSP A;  4YOQ A;  1KG7 A;  1LWV A;  4AI5 A;  5KN9 A;  2JHN A;  4B24 A;  3FHF A;  2OFI A;  1KG2 A;  3CWU A;  1MPG A;  4E9H A;  2JG6 A;  4YPR A;  3N5N X;  4E9F A;  1PU7 A;  4B22 A;  3FHG A;  3KNT A;  2NOH A;  3CVS A;  1HU0 A;  1LWY A;  5AN4 A;  3N0U A;  1YQK A;  5CHZ A;  1PU6 A;  1WEF A;  1NKU A;  5KN8 A;  1N3A A;  3CWS A;  3CW7 A;  1MUN A;  1MUD A;  1XG7 A;  4E9G A;  1M3H A;  4EW4 A;  4EJY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...