4UNFA

Crystal structure of deinococcus radiodurans endonuclease iii-1
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
236
structure length
236
Chain Sequence
APLNAARPAEERAALLAWVKERLHEEYGDQDPTPRRDPMHELISTILSQRTTHADEEAAYQELRTLGDWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGVIPRMGEQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTRPKCGKCILRERCDAYALYGDKVPSFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ENDONUCLEASE III-1
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans r1
molecule tags Lyase
total genus 86
structure length 236
sequence length 236
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4unfA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4unfA01
1MUDA 4E9FA 1EBMA 3CWAA 4EW4A 2YG9A 4B22A 5KN8A 3CW7A 4AIAA 4YPHA 1M3QA 3FHFA 3CWSA 2OFIA 1YQRA 2I5WA 2NOZA 3I0XA 1P7MA 1KG4A 4OFHA 2H56A 1YQKA 3CVTA 1WEGA 3CWTA 1MUNA 1M3HA 2NOIA 4EJZA 1RRQA 1NGNA 1KG3A 4DK9A 1KEAA 3IH7A 4B21A 4B24A 4UOBA 3N5NX 2NOEA 3I0WA 1KQJA 2JHNA 1PU8A 1DIZA 4E9HA 3KNTA 2OFKA 1RRSA 2ABKA 4UNFA 4B23A 1WEFA 4HSBA 1KG7A 1YQLA 1ORPA 2JHJA 4EVVA 1PVSA 5CHZA 1XQPA 1MUYA 3S6IA 1P59A 1NKUA 4EA5A 3IHOA 4PIIA 2XHIA 1MPGA 1KG2A 2YG8A 1WEIA 3OH9A 1XQOA 3OH6A 1PU6A 4AI5A 1LWWA 2NOFA 1KG6A 1LWYA 2JG6A 4EA4A 4AI4A 1YQMA 1HU0A 1N39A 5DPKA 3N0UA 3KTUA 1N3CA 1VRLA 1N3AA 1LMZA 5AN4A 4OFAA 3CVSA 3D4VA 1FN7A 4EJYA 3F0ZA 4YOQA 4EW0A 4OFEA 3F10A 1XG7A 3FHGA 4E9EA 1LWVA 2NOLA 2NOBA 3CWUA 1KO9A 1KG5A 1PU7A 3OGDA 3G0QA 2NOHA 3FSPA 1ORNA 4E9GA 5KN9A 4YPRA
chains in the Genus database with same CATH superfamily
3S3OA 1MUDA 4E9FA 3OS1A 1EBMA 4E7KA 3CWAA 4EW4A 2YG9A 4E7IA 4B22A 5KN8A 2V75A 3CW7A 4AIAA 4YPHA 1M3QA 3FHFA 3CWSA 3S3MA 2OFIA 3OYNA 1YQRA 2I5WA 3OY9A 2NOZA 3I0XA 1P7MA 4BE2A 1KG4A 5FROA 4OFHA 2H56A 1YQKA 4BDYA 3CVTA 4BE0A 1WEGA 3CWTA 1MUNA 1M3HA 2NOIA 4EJZA 1RRQA 1NGNA 1KG3A 3OYEA 4DK9A 5FRMA 1KEAA 4E7JA 3IH7A 4B21A 4B24A 4UOBA 3N5NX 2NOEA 3I0WA 1KQJA 2JHNA 1PU8A 3OYJA 3OYDA 1DIZA 4E9HA 3KNTA 2OFKA 3OYFA 3OYKA 1RRSA 2ABKA 4UNFA 3OYIA 4B23A 1WEFA 4HSBA 1KG7A 3OS0A 1YQLA 1ORPA 2JHJA 4EVVA 1PVSA 4ZTJA 5CHZA 1XQPA 3L2RA 3OYGA 1MUYA 3OYBA 3S6IA 3L2VA 1P59A 1NKUA 4EA5A 3IHOA 3OYCA 4PIIA 2XHIA 1MPGA 1KG2A 2W03A 4E7LA 2YG8A 1U84A 1WEIA 1XQOA 3OH9A 3OH6A 1PU6A 4AI5A 1LWWA 5FRNA 2NOFA 1KG6A 3OYMA 3OYAA 4BDZA 4NZGA 4BACA 2JG6A 1LWYA 4EA4A 4AI4A 1YQMA 1HU0A 4IKFA 1N39A 5DPKA 4E7HA 3N0UA 3OS2A 3KTUA 1N3CA 3S3NA 1VRLA 1LMZA 3L2QA 5AN4A 1N3AA 4OFAA 3CVSA 3NNQA 4BE1A 3L2WA 3D4VA 2JPSA 1FN7A 4EJYA 3F0ZA 4YOQA 4EW0A 4OFEA 3F10A 3LCNA 1XG7A 3FHGA 3R2XC 2W04A 4E9EA 1LWVA 3OYLA 3VW4A 2NOLA 2NOBA 3CWUA 1KO9A 1KG5A 1PU7A 3OGDA 4ZTFA 3G0QA 2NOHA 3FSPA 3OYHA 1ORNA 3L2UA 4E9GA 5KN9A 4YPRA
chains in the Genus database with same CATH topology
1MUDA 4E9FA 1EBMA 3CWAA 4EW4A 2YG9A 4B22A 5KN8A 3CW7A 4AIAA 4YPHA 1M3QA 3FHFA 3CWSA 2OFIA 1YQRA 2I5WA 2NOZA 3I0XA 1P7MA 1KG4A 4OFHA 2H56A 1YQKA 3CVTA 1WEGA 3CWTA 1MUNA 1M3HA 2NOIA 4EJZA 1RRQA 1NGNA 1KG3A 4DK9A 1KEAA 3IH7A 4B21A 4B24A 4UOBA 3N5NX 2NOEA 3I0WA 1KQJA 2JHNA 1PU8A 1DIZA 4E9HA 3KNTA 2OFKA 1RRSA 2ABKA 4UNFA 4B23A 1WEFA 4HSBA 1KG7A 1YQLA 1ORPA 2JHJA 4EVVA 1PVSA 5CHZA 1XQPA 1MUYA 3S6IA 1P59A 1NKUA 4EA5A 3IHOA 4PIIA 2XHIA 1MPGA 1KG2A 2YG8A 1WEIA 3OH9A 1XQOA 3OH6A 1PU6A 4AI5A 1LWWA 2NOFA 1KG6A 1LWYA 2JG6A 4EA4A 4AI4A 1YQMA 1HU0A 1N39A 5DPKA 3N0UA 3KTUA 1N3CA 1VRLA 1N3AA 1LMZA 5AN4A 4OFAA 3CVSA 3D4VA 1FN7A 4EJYA 3F0ZA 4YOQA 4EW0A 4OFEA 3F10A 1XG7A 3FHGA 4E9EA 1LWVA 2NOLA 2NOBA 3CWUA 1KO9A 1KG5A 1PU7A 3OGDA 3G0QA 2NOHA 3FSPA 1ORNA 4E9GA 5KN9A 4YPRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MUD A;  4E9F A;  1EBM A;  3CWA A;  4EW4 A;  2YG9 A;  4B22 A;  5KN8 A;  3CW7 A;  4AIA A;  4YPH A;  1M3Q A;  3FHF A;  3CWS A;  2OFI A;  1YQR A;  2I5W A;  2NOZ A;  3I0X A;  1P7M A;  1KG4 A;  4OFH A;  2H56 A;  1YQK A;  3CVT A;  1WEG A;  3CWT A;  1MUN A;  1M3H A;  2NOI A;  4EJZ A;  1RRQ A;  1NGN A;  1KG3 A;  4DK9 A;  1KEA A;  3IH7 A;  4B21 A;  4B24 A;  4UOB A;  3N5N X;  2NOE A;  3I0W A;  1KQJ A;  2JHN A;  1PU8 A;  1DIZ A;  4E9H A;  3KNT A;  2OFK A;  1RRS A;  2ABK A;  4UNF A;  4B23 A;  1WEF A;  4HSB A;  1KG7 A;  1YQL A;  1ORP A;  2JHJ A;  4EVV A;  1PVS A;  5CHZ A;  1XQP A;  1MUY A;  3S6I A;  1P59 A;  1NKU A;  4EA5 A;  3IHO A;  4PII A;  2XHI A;  1MPG A;  1KG2 A;  2YG8 A;  1WEI A;  3OH9 A;  1XQO A;  3OH6 A;  1PU6 A;  4AI5 A;  1LWW A;  2NOF A;  1KG6 A;  1LWY A;  2JG6 A;  4EA4 A;  4AI4 A;  1YQM A;  1HU0 A;  1N39 A;  5DPK A;  3N0U A;  3KTU A;  1N3C A;  1VRL A;  1N3A A;  1LMZ A;  5AN4 A;  4OFA A;  3CVS A;  3D4V A;  1FN7 A;  4EJY A;  3F0Z A;  4YOQ A;  4EW0 A;  4OFE A;  3F10 A;  1XG7 A;  3FHG A;  4E9E A;  1LWV A;  2NOL A;  2NOB A;  3CWU A;  1KO9 A;  1KG5 A;  1PU7 A;  3OGD A;  3G0Q A;  2NOH A;  3FSP A;  1ORN A;  4E9G A;  5KN9 A;  4YPR A; 
#chains in the Genus database with same CATH topology
 3S3O A;  1MUD A;  4E9F A;  3OS1 A;  1EBM A;  4E7K A;  3CWA A;  4EW4 A;  2YG9 A;  4E7I A;  4B22 A;  5KN8 A;  2V75 A;  3CW7 A;  4AIA A;  4YPH A;  1M3Q A;  3FHF A;  3CWS A;  3S3M A;  2OFI A;  3OYN A;  1YQR A;  2I5W A;  3OY9 A;  2NOZ A;  3I0X A;  1P7M A;  4BE2 A;  1KG4 A;  5FRO A;  4OFH A;  2H56 A;  1YQK A;  4BDY A;  3CVT A;  4BE0 A;  1WEG A;  3CWT A;  1MUN A;  1M3H A;  2NOI A;  4EJZ A;  1RRQ A;  1NGN A;  1KG3 A;  3OYE A;  4DK9 A;  5FRM A;  1KEA A;  4E7J A;  3IH7 A;  4B21 A;  4B24 A;  4UOB A;  3N5N X;  2NOE A;  3I0W A;  1KQJ A;  2JHN A;  1PU8 A;  3OYJ A;  3OYD A;  1DIZ A;  4E9H A;  3KNT A;  2OFK A;  3OYF A;  3OYK A;  1RRS A;  2ABK A;  4UNF A;  3OYI A;  4B23 A;  1WEF A;  4HSB A;  1KG7 A;  3OS0 A;  1YQL A;  1ORP A;  2JHJ A;  4EVV A;  1PVS A;  4ZTJ A;  5CHZ A;  1XQP A;  3L2R A;  3OYG A;  1MUY A;  3OYB A;  3S6I A;  3L2V A;  1P59 A;  1NKU A;  4EA5 A;  3IHO A;  3OYC A;  4PII A;  2XHI A;  1MPG A;  1KG2 A;  2W03 A;  4E7L A;  2YG8 A;  1U84 A;  1WEI A;  1XQO A;  3OH9 A;  3OH6 A;  1PU6 A;  4AI5 A;  1LWW A;  5FRN A;  2NOF A;  1KG6 A;  3OYM A;  3OYA A;  4BDZ A;  4NZG A;  4BAC A;  2JG6 A;  1LWY A;  4EA4 A;  4AI4 A;  1YQM A;  1HU0 A;  4IKF A;  1N39 A;  5DPK A;  4E7H A;  3N0U A;  3OS2 A;  3KTU A;  1N3C A;  3S3N A;  1VRL A;  1LMZ A;  3L2Q A;  5AN4 A;  1N3A A;  4OFA A;  3CVS A;  3NNQ A;  4BE1 A;  3L2W A;  3D4V A;  2JPS A;  1FN7 A;  4EJY A;  3F0Z A;  4YOQ A;  4EW0 A;  4OFE A;  3F10 A;  3LCN A;  1XG7 A;  3FHG A;  3R2X C;  2W04 A;  4E9E A;  1LWV A;  3OYL A;  3VW4 A;  2NOL A;  2NOB A;  3CWU A;  1KO9 A;  1KG5 A;  1PU7 A;  3OGD A;  4ZTF A;  3G0Q A;  2NOH A;  3FSP A;  3OYH A;  1ORN A;  3L2U A;  4E9G A;  5KN9 A;  4YPR A; 
#chains in the Genus database with same CATH homology
 1MUD A;  4E9F A;  1EBM A;  3CWA A;  4EW4 A;  2YG9 A;  4B22 A;  5KN8 A;  3CW7 A;  4AIA A;  4YPH A;  1M3Q A;  3FHF A;  3CWS A;  2OFI A;  1YQR A;  2I5W A;  2NOZ A;  3I0X A;  1P7M A;  1KG4 A;  4OFH A;  2H56 A;  1YQK A;  3CVT A;  1WEG A;  3CWT A;  1MUN A;  1M3H A;  2NOI A;  4EJZ A;  1RRQ A;  1NGN A;  1KG3 A;  4DK9 A;  1KEA A;  3IH7 A;  4B21 A;  4B24 A;  4UOB A;  3N5N X;  2NOE A;  3I0W A;  1KQJ A;  2JHN A;  1PU8 A;  1DIZ A;  4E9H A;  3KNT A;  2OFK A;  1RRS A;  2ABK A;  4UNF A;  4B23 A;  1WEF A;  4HSB A;  1KG7 A;  1YQL A;  1ORP A;  2JHJ A;  4EVV A;  1PVS A;  5CHZ A;  1XQP A;  1MUY A;  3S6I A;  1P59 A;  1NKU A;  4EA5 A;  3IHO A;  4PII A;  2XHI A;  1MPG A;  1KG2 A;  2YG8 A;  1WEI A;  3OH9 A;  1XQO A;  3OH6 A;  1PU6 A;  4AI5 A;  1LWW A;  2NOF A;  1KG6 A;  1LWY A;  2JG6 A;  4EA4 A;  4AI4 A;  1YQM A;  1HU0 A;  1N39 A;  5DPK A;  3N0U A;  3KTU A;  1N3C A;  1VRL A;  1N3A A;  1LMZ A;  5AN4 A;  4OFA A;  3CVS A;  3D4V A;  1FN7 A;  4EJY A;  3F0Z A;  4YOQ A;  4EW0 A;  4OFE A;  3F10 A;  1XG7 A;  3FHG A;  4E9E A;  1LWV A;  2NOL A;  2NOB A;  3CWU A;  1KO9 A;  1KG5 A;  1PU7 A;  3OGD A;  3G0Q A;  2NOH A;  3FSP A;  1ORN A;  4E9G A;  5KN9 A;  4YPR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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