4UOPA

Crystal structure of the lipoteichoic acid synthase ltap from listeria monocytogenes
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
Knots found
sequence length
408
structure length
408
Chain Sequence
ITAKNVNDIKGVSVKSNPDYFGAAKGKNLIIVQLESFQRNLTNVKINGQSITPTLDGLQNETMYSNQFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQLKAEPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATNYDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.
pubmed doi rcsb
molecule keywords LIPOTEICHOIC ACID PRIMASE
molecule tags Transferase
source organism Listeria monocytogenes
total genus 150
structure length 408
sequence length 408
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.8.-:
pdb deposition date 2014-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4uopA02
1ALKA 5K4PA 4UORA 4NWJA 3SZYA 5IJSA 1ED9A 1EQJA 1N2LA 3TG0A 1ELXA 4UOOA 2W5XA 3NKOA 1ALJA 1HDHA 5L0BA 1KHJA 1ELZA 4KAVA 4GTXA 4KAYA 2W5VA 3NKRA 3T02A 4LRDA 4QAXA 1AJDA 3Q3QA 4ZGAA 4NWXA 3MK0A 4LREA 4N7TA 4GTZA 4CXUA 4CYSA 2W5QA 3ED4A 3MK2A 2VQRA 2X98A 1ALHA 1HJKA 3KD8A 4LR7A 3WAXA 1E1ZP 1ANJA 2IUCB 4GTYA 1E2SP 3E2DA 1SHQA 3WAWA 1KH7A 4LRBA 4ZG9A 1N2KA 3M8ZA 3TX0A 2XRGA 5TJ3A 3LXQA 4LRCA 3IGZB 3NKMA 3NKNA 5DLTA 5L0EA 3IGYB 1KHKA 2RH6A 5DLWA 4UPKA 4UPIA 4UPLA 5EGHA 4LR9A 5AJ9A 1SHNA 1O99A 4ZG7A 3SZZA 1KHNA 2XR9A 5GOVA 2W8DA 3MK1A 2GSNA 1KH4A 4B56A 5LRMA 3OT9A 1ZEBA 3T00A 3UN5A 2GSOA 1ALIA 5EGEA 3T01A 3BDHA 3M7VA 1Y7AA 5KXAA 2IFYA 3DPCA 3DYCA 1ZEDA 3BDFA 3BDGB 1AUKA 1EW2A 3NVLA 1KHLA 2W5SA 5HRTA 3M8YA 5C66A 4MY4A 2ANHA 3A52A 1FSUA 2GA3A 3IDDA 2G9YA 1URAA 2GLQA 2W8SA 3UN3A 3WBHA 1B8JA 1P49A 2W5RA 1O98A 1HQAA 4YR1A 2W5WA 4GTWA 1EJJA 5LRNA 1EI6A 1Y6VA 2GSUA 4MIVA 4CXKA 4ZG6A 3TWZA 1URBA 3UO0A 4KJGA 4UOPA 3CMRA 4LRFA 2IUCA 1E33P 2D1GA 3NKQA 4KJDA 3WAVA 4KM4A 4CYRA 4TN0A 1ED8A 3M8WA 5LQQA 4LRAA 5L0KA 3UNYA 1EW9A 1ELYA 1E3CP 1KH5A 3WAYA 1ANIA 4FDIA 1AJBA 5DLVA 1KH9A 4LR8A 4MHXA 1EW8A 4CXSA 1AJAA 5IJQA 1ZEFA 1AJCA 3UN2A 4UPHA 2QZUA 5LIAA 3NKPA 4LQYA 5GRRA 1K7HA 4FDJA 4LR2A 3B5QA 5INHA 3BDGA 2ZKTA 2W5TA
chains in the Genus database with same CATH superfamily
1ALKA 5K4PA 4UORA 4NWJA 3SZYA 5IJSA 1ED9A 1EQJA 1N2LA 3TG0A 1ELXA 4UOOA 2W5XA 3NKOA 1ALJA 1HDHA 5L0BA 1KHJA 1ELZA 4KAVA 4GTXA 4KAYA 2W5VA 3NKRA 3T02A 4LRDA 4QAXA 1AJDA 3Q3QA 4ZGAA 4NWXA 3MK0A 4LREA 4N7TA 4GTZA 4CXUA 4CYSA 2W5QA 3ED4A 3MK2A 2VQRA 2X98A 1ALHA 1HJKA 3KD8A 4LR7A 3WAXA 1E1ZP 1ANJA 2IUCB 4GTYA 1E2SP 3E2DA 1SHQA 3WAWA 1KH7A 4LRBA 4ZG9A 1N2KA 3M8ZA 3TX0A 2XRGA 5TJ3A 3LXQA 4LRCA 3IGZB 3NKMA 3NKNA 5DLTA 5L0EA 3IGYB 1KHKA 2RH6A 5DLWA 4UPKA 4UPIA 4UPLA 5EGHA 4LR9A 5AJ9A 1SHNA 1O99A 4ZG7A 3SZZA 1KHNA 2XR9A 5GOVA 2W8DA 3MK1A 2GSNA 1KH4A 4B56A 5LRMA 3OT9A 1ZEBA 3T00A 3UN5A 2GSOA 1ALIA 5EGEA 3T01A 3BDHA 3M7VA 1Y7AA 5KXAA 2IFYA 3DPCA 3DYCA 1ZEDA 3BDFA 3BDGB 1AUKA 1EW2A 3NVLA 1KHLA 2W5SA 5HRTA 3M8YA 5C66A 4MY4A 2ANHA 3A52A 1FSUA 2GA3A 3IDDA 2G9YA 1URAA 2GLQA 2W8SA 3UN3A 3WBHA 1B8JA 1P49A 2W5RA 1O98A 1HQAA 4YR1A 2W5WA 4GTWA 1EJJA 5LRNA 1EI6A 1Y6VA 2GSUA 4MIVA 4CXKA 4ZG6A 3TWZA 1URBA 3UO0A 4KJGA 4UOPA 3CMRA 4LRFA 2IUCA 1E33P 2D1GA 3NKQA 4KJDA 3WAVA 4KM4A 4CYRA 4TN0A 1ED8A 3M8WA 5LQQA 4LRAA 5L0KA 3UNYA 1EW9A 1ELYA 1E3CP 1KH5A 3WAYA 1ANIA 4FDIA 1AJBA 5DLVA 1KH9A 4LR8A 4MHXA 1EW8A 4CXSA 1AJAA 5IJQA 1ZEFA 1AJCA 3UN2A 4UPHA 2QZUA 5LIAA 3NKPA 4LQYA 5GRRA 1K7HA 4FDJA 4LR2A 3B5QA 5INHA 3BDGA 2ZKTA 2W5TA
chains in the Genus database with same CATH topology
1ALKA 5K4PA 4UORA 4NWJA 3SZYA 5IJSA 1ED9A 1EQJA 1N2LA 3TG0A 1ELXA 4UOOA 2W5XA 3NKOA 1ALJA 1HDHA 5L0BA 1KHJA 1ELZA 4KAVA 4GTXA 4KAYA 2W5VA 3NKRA 3T02A 4LRDA 4QAXA 1AJDA 3Q3QA 4ZGAA 4NWXA 3MK0A 4LREA 4N7TA 4GTZA 4CXUA 4CYSA 2W5QA 3ED4A 3MK2A 2VQRA 2X98A 1ALHA 1HJKA 3KD8A 4LR7A 3WAXA 1E1ZP 1ANJA 2IUCB 4GTYA 1E2SP 3E2DA 1SHQA 3WAWA 1KH7A 4LRBA 4ZG9A 1N2KA 3M8ZA 3TX0A 2XRGA 5TJ3A 3LXQA 4LRCA 3IGZB 3NKMA 3NKNA 5DLTA 5L0EA 3IGYB 1KHKA 2RH6A 5DLWA 4UPKA 4UPIA 4UPLA 5EGHA 4LR9A 5AJ9A 1SHNA 1O99A 4ZG7A 3SZZA 1KHNA 2XR9A 5GOVA 2W8DA 3MK1A 2GSNA 1KH4A 4B56A 5LRMA 3OT9A 1ZEBA 3T00A 3UN5A 2GSOA 1ALIA 5EGEA 3T01A 3BDHA 3M7VA 1Y7AA 5KXAA 2IFYA 3DPCA 3DYCA 1ZEDA 3BDFA 3BDGB 1AUKA 1EW2A 3NVLA 1KHLA 2W5SA 5HRTA 3M8YA 5C66A 4MY4A 2ANHA 3A52A 1FSUA 2GA3A 3IDDA 2G9YA 1URAA 2GLQA 2W8SA 3UN3A 3WBHA 1B8JA 1P49A 2W5RA 1O98A 1HQAA 4YR1A 2W5WA 4GTWA 1EJJA 5LRNA 1EI6A 1Y6VA 2GSUA 4MIVA 4CXKA 4ZG6A 3TWZA 1URBA 3UO0A 4KJGA 4UOPA 3CMRA 4LRFA 2IUCA 1E33P 2D1GA 3NKQA 4KJDA 3WAVA 4KM4A 4CYRA 4TN0A 1ED8A 3M8WA 5LQQA 4LRAA 5L0KA 3UNYA 1EW9A 1ELYA 1E3CP 1KH5A 3WAYA 1ANIA 4FDIA 1AJBA 5DLVA 1KH9A 4LR8A 4MHXA 1EW8A 4CXSA 1AJAA 5IJQA 1ZEFA 1AJCA 3UN2A 4UPHA 2QZUA 5LIAA 3NKPA 4LQYA 5GRRA 1K7HA 4FDJA 4LR2A 3B5QA 5INHA 3BDGA 2ZKTA 2W5TA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1ALK A;  5K4P A;  4UOR A;  4NWJ A;  3SZY A;  5IJS A;  1ED9 A;  1EQJ A;  1N2L A;  3TG0 A;  1ELX A;  4UOO A;  2W5X A;  3NKO A;  1ALJ A;  1HDH A;  5L0B A;  1KHJ A;  1ELZ A;  4KAV A;  4GTX A;  4KAY A;  2W5V A;  3NKR A;  3T02 A;  4LRD A;  4QAX A;  1AJD A;  3Q3Q A;  4ZGA A;  4NWX A;  3MK0 A;  4LRE A;  4N7T A;  4GTZ A;  4CXU A;  4CYS A;  2W5Q A;  3ED4 A;  3MK2 A;  2VQR A;  2X98 A;  1ALH A;  1HJK A;  3KD8 A;  4LR7 A;  3WAX A;  1E1Z P;  1ANJ A;  2IUC B;  4GTY A;  1E2S P;  3E2D A;  1SHQ A;  3WAW A;  1KH7 A;  4LRB A;  4ZG9 A;  1N2K A;  3M8Z A;  3TX0 A;  2XRG A;  5TJ3 A;  3LXQ A;  4LRC A;  3IGZ B;  3NKM A;  3NKN A;  5DLT A;  5L0E A;  3IGY B;  1KHK A;  2RH6 A;  5DLW A;  4UPK A;  4UPI A;  4UPL A;  5EGH A;  4LR9 A;  5AJ9 A;  1SHN A;  1O99 A;  4ZG7 A;  3SZZ A;  1KHN A;  2XR9 A;  5GOV A;  2W8D A;  3MK1 A;  2GSN A;  1KH4 A;  4B56 A;  5LRM A;  3OT9 A;  1ZEB A;  3T00 A;  3UN5 A;  2GSO A;  1ALI A;  5EGE A;  3T01 A;  3BDH A;  3M7V A;  1Y7A A;  5KXA A;  2IFY A;  3DPC A;  3DYC A;  1ZED A;  3BDF A;  3BDG B;  1AUK A;  1EW2 A;  3NVL A;  1KHL A;  2W5S A;  5HRT A;  3M8Y A;  5C66 A;  4MY4 A;  2ANH A;  3A52 A;  1FSU A;  2GA3 A;  3IDD A;  2G9Y A;  1URA A;  2GLQ A;  2W8S A;  3UN3 A;  3WBH A;  1B8J A;  1P49 A;  2W5R A;  1O98 A;  1HQA A;  4YR1 A;  2W5W A;  4GTW A;  1EJJ A;  5LRN A;  1EI6 A;  1Y6V A;  2GSU A;  4MIV A;  4CXK A;  4ZG6 A;  3TWZ A;  1URB A;  3UO0 A;  4KJG A;  4UOP A;  3CMR A;  4LRF A;  2IUC A;  1E33 P;  2D1G A;  3NKQ A;  4KJD A;  3WAV A;  4KM4 A;  4CYR A;  4TN0 A;  1ED8 A;  3M8W A;  5LQQ A;  4LRA A;  5L0K A;  3UNY A;  1EW9 A;  1ELY A;  1E3C P;  1KH5 A;  3WAY A;  1ANI A;  4FDI A;  1AJB A;  5DLV A;  1KH9 A;  4LR8 A;  4MHX A;  1EW8 A;  4CXS A;  1AJA A;  5IJQ A;  1ZEF A;  1AJC A;  3UN2 A;  4UPH A;  2QZU A;  5LIA A;  3NKP A;  4LQY A;  5GRR A;  1K7H A;  4FDJ A;  4LR2 A;  3B5Q A;  5INH A;  3BDG A;  2ZKT A;  2W5T A; 
#chains in the Genus database with same CATH topology
 1ALK A;  5K4P A;  4UOR A;  4NWJ A;  3SZY A;  5IJS A;  1ED9 A;  1EQJ A;  1N2L A;  3TG0 A;  1ELX A;  4UOO A;  2W5X A;  3NKO A;  1ALJ A;  1HDH A;  5L0B A;  1KHJ A;  1ELZ A;  4KAV A;  4GTX A;  4KAY A;  2W5V A;  3NKR A;  3T02 A;  4LRD A;  4QAX A;  1AJD A;  3Q3Q A;  4ZGA A;  4NWX A;  3MK0 A;  4LRE A;  4N7T A;  4GTZ A;  4CXU A;  4CYS A;  2W5Q A;  3ED4 A;  3MK2 A;  2VQR A;  2X98 A;  1ALH A;  1HJK A;  3KD8 A;  4LR7 A;  3WAX A;  1E1Z P;  1ANJ A;  2IUC B;  4GTY A;  1E2S P;  3E2D A;  1SHQ A;  3WAW A;  1KH7 A;  4LRB A;  4ZG9 A;  1N2K A;  3M8Z A;  3TX0 A;  2XRG A;  5TJ3 A;  3LXQ A;  4LRC A;  3IGZ B;  3NKM A;  3NKN A;  5DLT A;  5L0E A;  3IGY B;  1KHK A;  2RH6 A;  5DLW A;  4UPK A;  4UPI A;  4UPL A;  5EGH A;  4LR9 A;  5AJ9 A;  1SHN A;  1O99 A;  4ZG7 A;  3SZZ A;  1KHN A;  2XR9 A;  5GOV A;  2W8D A;  3MK1 A;  2GSN A;  1KH4 A;  4B56 A;  5LRM A;  3OT9 A;  1ZEB A;  3T00 A;  3UN5 A;  2GSO A;  1ALI A;  5EGE A;  3T01 A;  3BDH A;  3M7V A;  1Y7A A;  5KXA A;  2IFY A;  3DPC A;  3DYC A;  1ZED A;  3BDF A;  3BDG B;  1AUK A;  1EW2 A;  3NVL A;  1KHL A;  2W5S A;  5HRT A;  3M8Y A;  5C66 A;  4MY4 A;  2ANH A;  3A52 A;  1FSU A;  2GA3 A;  3IDD A;  2G9Y A;  1URA A;  2GLQ A;  2W8S A;  3UN3 A;  3WBH A;  1B8J A;  1P49 A;  2W5R A;  1O98 A;  1HQA A;  4YR1 A;  2W5W A;  4GTW A;  1EJJ A;  5LRN A;  1EI6 A;  1Y6V A;  2GSU A;  4MIV A;  4CXK A;  4ZG6 A;  3TWZ A;  1URB A;  3UO0 A;  4KJG A;  4UOP A;  3CMR A;  4LRF A;  2IUC A;  1E33 P;  2D1G A;  3NKQ A;  4KJD A;  3WAV A;  4KM4 A;  4CYR A;  4TN0 A;  1ED8 A;  3M8W A;  5LQQ A;  4LRA A;  5L0K A;  3UNY A;  1EW9 A;  1ELY A;  1E3C P;  1KH5 A;  3WAY A;  1ANI A;  4FDI A;  1AJB A;  5DLV A;  1KH9 A;  4LR8 A;  4MHX A;  1EW8 A;  4CXS A;  1AJA A;  5IJQ A;  1ZEF A;  1AJC A;  3UN2 A;  4UPH A;  2QZU A;  5LIA A;  3NKP A;  4LQY A;  5GRR A;  1K7H A;  4FDJ A;  4LR2 A;  3B5Q A;  5INH A;  3BDG A;  2ZKT A;  2W5T A; 
#chains in the Genus database with same CATH homology
 1ALK A;  5K4P A;  4UOR A;  4NWJ A;  3SZY A;  5IJS A;  1ED9 A;  1EQJ A;  1N2L A;  3TG0 A;  1ELX A;  4UOO A;  2W5X A;  3NKO A;  1ALJ A;  1HDH A;  5L0B A;  1KHJ A;  1ELZ A;  4KAV A;  4GTX A;  4KAY A;  2W5V A;  3NKR A;  3T02 A;  4LRD A;  4QAX A;  1AJD A;  3Q3Q A;  4ZGA A;  4NWX A;  3MK0 A;  4LRE A;  4N7T A;  4GTZ A;  4CXU A;  4CYS A;  2W5Q A;  3ED4 A;  3MK2 A;  2VQR A;  2X98 A;  1ALH A;  1HJK A;  3KD8 A;  4LR7 A;  3WAX A;  1E1Z P;  1ANJ A;  2IUC B;  4GTY A;  1E2S P;  3E2D A;  1SHQ A;  3WAW A;  1KH7 A;  4LRB A;  4ZG9 A;  1N2K A;  3M8Z A;  3TX0 A;  2XRG A;  5TJ3 A;  3LXQ A;  4LRC A;  3IGZ B;  3NKM A;  3NKN A;  5DLT A;  5L0E A;  3IGY B;  1KHK A;  2RH6 A;  5DLW A;  4UPK A;  4UPI A;  4UPL A;  5EGH A;  4LR9 A;  5AJ9 A;  1SHN A;  1O99 A;  4ZG7 A;  3SZZ A;  1KHN A;  2XR9 A;  5GOV A;  2W8D A;  3MK1 A;  2GSN A;  1KH4 A;  4B56 A;  5LRM A;  3OT9 A;  1ZEB A;  3T00 A;  3UN5 A;  2GSO A;  1ALI A;  5EGE A;  3T01 A;  3BDH A;  3M7V A;  1Y7A A;  5KXA A;  2IFY A;  3DPC A;  3DYC A;  1ZED A;  3BDF A;  3BDG B;  1AUK A;  1EW2 A;  3NVL A;  1KHL A;  2W5S A;  5HRT A;  3M8Y A;  5C66 A;  4MY4 A;  2ANH A;  3A52 A;  1FSU A;  2GA3 A;  3IDD A;  2G9Y A;  1URA A;  2GLQ A;  2W8S A;  3UN3 A;  3WBH A;  1B8J A;  1P49 A;  2W5R A;  1O98 A;  1HQA A;  4YR1 A;  2W5W A;  4GTW A;  1EJJ A;  5LRN A;  1EI6 A;  1Y6V A;  2GSU A;  4MIV A;  4CXK A;  4ZG6 A;  3TWZ A;  1URB A;  3UO0 A;  4KJG A;  4UOP A;  3CMR A;  4LRF A;  2IUC A;  1E33 P;  2D1G A;  3NKQ A;  4KJD A;  3WAV A;  4KM4 A;  4CYR A;  4TN0 A;  1ED8 A;  3M8W A;  5LQQ A;  4LRA A;  5L0K A;  3UNY A;  1EW9 A;  1ELY A;  1E3C P;  1KH5 A;  3WAY A;  1ANI A;  4FDI A;  1AJB A;  5DLV A;  1KH9 A;  4LR8 A;  4MHX A;  1EW8 A;  4CXS A;  1AJA A;  5IJQ A;  1ZEF A;  1AJC A;  3UN2 A;  4UPH A;  2QZU A;  5LIA A;  3NKP A;  4LQY A;  5GRR A;  1K7H A;  4FDJ A;  4LR2 A;  3B5Q A;  5INH A;  3BDG A;  2ZKT A;  2W5T A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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