4UV6A

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
346
structure length
336
Chain Sequence
b'SNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEEELTDYEKIQEGFRQNNRDMIKSAFLPVSDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEFPGLEQKLISEE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords APICAL MEROZOITE ANTIGEN 1
publication title Crystal Structure of Plasmodium Knowlesi Apical Membrane Antigen 1 and its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
source organism Plasmodium knowlesi
molecule tags Cell invasion
total genus 99
structure length 336
sequence length 346
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uv6A01
5CSQA 4APMA 4IUAA 5CS3A 4R1CA 4Z0DA 2HGFA 4Z09A 2Z8WA 2X2ZA 5CS9A 4Z0EA 2Y8RA 5I25A 5CP9A 4DURA 1W8KA 2J8JA 4A5TS 2K13X 1GMOA 3HMTA 3SP8A 5CS1A 2QJ2A 2Z8VA 5EOKA 2Q8BA 1I8NA 1GP9A 4R1BA 3HMRA 5CT3A 3SRJA 1W81A 3MKPA 2LL4M 4Z0FA 5CT1A 2J8LA 1NK1A 5COEA 4UV6A 1GMNA 1BHTA 2QJ4A 3HN4A 4R19A 3ZLEA 3HMSA 1YXEA 2YILA 2YIOA 1Z40A 5CT2A 1HKYA 3SRIA 2LL3A 4UAOA 2YIPA 4APLA 5CS5A 2Q8AA 5EODA 4R1AA 3ZWZA 2F83A
chains in the Genus database with same CATH superfamily
5CSQA 4APMA 4IUAA 5CS3A 4R1CA 4Z0DA 2HGFA 4Z09A 2Z8WA 2X2ZA 5CS9A 4Z0EA 2Y8RA 5I25A 5CP9A 4DURA 1W8KA 2J8JA 4A5TS 2K13X 1GMOA 3HMTA 3SP8A 5CS1A 2QJ2A 2Z8VA 5EOKA 2Q8BA 1I8NA 1GP9A 4R1BA 3HMRA 5CT3A 3SRJA 1W81A 3MKPA 2LL4M 4YIZA 4Z0FA 2J8LA 1NK1A 5CT1A 5COEA 4UV6A 1GMNA 1BHTA 2QJ4A 3HN4A 4R19A 4YIVA 3ZLEA 2KL5A 3HMSA 1YXEA 2YILA 2YIOA 1Z40A 5CT2A 1HKYA 3SRIA 2LL3A 4UAOA 2YIPA 4APLA 5CS5A 2Q8AA 5EODA 4R1AA 3ZWZA 2F83A
chains in the Genus database with same CATH topology
5CSQA 4APMA 4IUAA 5CS3A 4R1CA 4Z0DA 2HGFA 4Z09A 2Z8WA 2X2ZA 5CS9A 4Z0EA 2Y8RA 5I25A 5CP9A 4DURA 1W8KA 2J8JA 4A5TS 2K13X 1GMOA 3HMTA 3SP8A 5CS1A 2QJ2A 2Z8VA 5EOKA 2Q8BA 1I8NA 1GP9A 4R1BA 3HMRA 5CT3A 3SRJA 1W81A 3MKPA 2LL4M 4YIZA 4Z0FA 2J8LA 1NK1A 5CT1A 5COEA 4UV6A 1GMNA 1BHTA 2QJ4A 3HN4A 4R19A 4YIVA 3ZLEA 2KL5A 3HMSA 1YXEA 2YILA 2YIOA 1Z40A 5CT2A 1HKYA 3SRIA 2LL3A 4UAOA 2YIPA 4APLA 5CS5A 2Q8AA 5EODA 4R1AA 3ZWZA 2F83A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CSQ A;  4APM A;  4IUA A;  5CS3 A;  4R1C A;  4Z0D A;  2HGF A;  4Z09 A;  2Z8W A;  2X2Z A;  5CS9 A;  4Z0E A;  2Y8R A;  5I25 A;  5CP9 A;  4DUR A;  1W8K A;  2J8J A;  4A5T S;  2K13 X;  1GMO A;  3HMT A;  3SP8 A;  5CS1 A;  2QJ2 A;  2Z8V A;  5EOK A;  2Q8B A;  1I8N A;  1GP9 A;  4R1B A;  3HMR A;  5CT3 A;  3SRJ A;  1W81 A;  3MKP A;  2LL4 M;  4Z0F A;  5CT1 A;  2J8L A;  1NK1 A;  5COE A;  4UV6 A;  1GMN A;  1BHT A;  2QJ4 A;  3HN4 A;  4R19 A;  3ZLE A;  3HMS A;  1YXE A;  2YIL A;  2YIO A;  1Z40 A;  5CT2 A;  1HKY A;  3SRI A;  2LL3 A;  4UAO A;  2YIP A;  4APL A;  5CS5 A;  2Q8A A;  5EOD A;  4R1A A;  3ZWZ A;  2F83 A; 
#chains in the Genus database with same CATH topology
 5CSQ A;  4APM A;  4IUA A;  5CS3 A;  4R1C A;  4Z0D A;  2HGF A;  4Z09 A;  2Z8W A;  2X2Z A;  5CS9 A;  4Z0E A;  2Y8R A;  5I25 A;  5CP9 A;  4DUR A;  1W8K A;  2J8J A;  4A5T S;  2K13 X;  1GMO A;  3HMT A;  3SP8 A;  5CS1 A;  2QJ2 A;  2Z8V A;  5EOK A;  2Q8B A;  1I8N A;  1GP9 A;  4R1B A;  3HMR A;  5CT3 A;  3SRJ A;  1W81 A;  3MKP A;  2LL4 M;  4YIZ A;  4Z0F A;  2J8L A;  1NK1 A;  5CT1 A;  5COE A;  4UV6 A;  1GMN A;  1BHT A;  2QJ4 A;  3HN4 A;  4R19 A;  4YIV A;  3ZLE A;  2KL5 A;  3HMS A;  1YXE A;  2YIL A;  2YIO A;  1Z40 A;  5CT2 A;  1HKY A;  3SRI A;  2LL3 A;  4UAO A;  2YIP A;  4APL A;  5CS5 A;  2Q8A A;  5EOD A;  4R1A A;  3ZWZ A;  2F83 A; 
#chains in the Genus database with same CATH homology
 5CSQ A;  4APM A;  4IUA A;  5CS3 A;  4R1C A;  4Z0D A;  2HGF A;  4Z09 A;  2Z8W A;  2X2Z A;  5CS9 A;  4Z0E A;  2Y8R A;  5I25 A;  5CP9 A;  4DUR A;  1W8K A;  2J8J A;  4A5T S;  2K13 X;  1GMO A;  3HMT A;  3SP8 A;  5CS1 A;  2QJ2 A;  2Z8V A;  5EOK A;  2Q8B A;  1I8N A;  1GP9 A;  4R1B A;  3HMR A;  5CT3 A;  3SRJ A;  1W81 A;  3MKP A;  2LL4 M;  4YIZ A;  4Z0F A;  2J8L A;  1NK1 A;  5CT1 A;  5COE A;  4UV6 A;  1GMN A;  1BHT A;  2QJ4 A;  3HN4 A;  4R19 A;  4YIV A;  3ZLE A;  2KL5 A;  3HMS A;  1YXE A;  2YIL A;  2YIO A;  1Z40 A;  5CT2 A;  1HKY A;  3SRI A;  2LL3 A;  4UAO A;  2YIP A;  4APL A;  5CS5 A;  2Q8A A;  5EOD A;  4R1A A;  3ZWZ A;  2F83 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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