4UV6A

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
346
structure length
336
Chain Sequence
SNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEEELTDYEKIQEGFRQNNRDMIKSAFLPVSDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEFPGLEQKLISEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords APICAL MEROZOITE ANTIGEN 1
publication title Crystal Structure of Plasmodium Knowlesi Apical Membrane Antigen 1 and its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
source organism Plasmodium knowlesi
total genus 99
structure length 336
sequence length 346
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uv6A01
1GMNA 5CS1A 2Z8WA 2K13X 2YIOA 3HMRA 5EODA 5I25A 2YILA 2Q8BA 2LL3A 1GP9A 5COEA 5CSQA 4IUAA 1W8KA 3SRIA 4DURA 1W81A 4R1BA 3HN4A 3SRJA 2J8LA 4Z09A 5EOKA 1YXEA 4UAOA 3HMSA 2J8JA 2QJ4A 5CS3A 4Z0DA 1NK1A 5CS9A 3ZWZA 5CS5A 3HMTA 5CP9A 2YIPA 1I8NA 3ZLEA 4A5TS 4R1CA 4APMA 2X2ZA 4Z0EA 1Z40A 2Q8AA 1HKYA 2Z8VA 5CT3A 3SP8A 4Z0FA 2F83A 5CT2A 2HGFA 4R19A 5CT1A 2Y8RA 2LL4M 1GMOA 3MKPA 4UV6A 4APLA 2QJ2A 1BHTA 4R1AA
chains in the Genus database with same CATH superfamily
1GMNA 5CS1A 2Z8WA 2K13X 2YIOA 3HMRA 5EODA 5I25A 2YILA 4YIZA 2Q8BA 2LL3A 1GP9A 5COEA 5CSQA 4IUAA 1W8KA 3SRIA 4DURA 1W81A 4R1BA 3HN4A 3SRJA 2J8LA 4Z09A 5EOKA 1YXEA 4UAOA 3HMSA 4YIVA 2J8JA 2QJ4A 5CS3A 2KL5A 1NK1A 5CS9A 4Z0DA 3ZWZA 5CS5A 3HMTA 5CP9A 2YIPA 1I8NA 3ZLEA 4A5TS 4R1CA 4APMA 2X2ZA 4Z0EA 1Z40A 2Q8AA 1HKYA 2Z8VA 5CT3A 3SP8A 4Z0FA 2F83A 5CT2A 2HGFA 4R19A 5CT1A 2Y8RA 2LL4M 1GMOA 3MKPA 4UV6A 4APLA 2QJ2A 1BHTA 4R1AA
chains in the Genus database with same CATH topology
1GMNA 5CS1A 2Z8WA 2K13X 2YIOA 3HMRA 5EODA 5I25A 2YILA 4YIZA 2Q8BA 2LL3A 1GP9A 5COEA 5CSQA 4IUAA 1W8KA 3SRIA 4DURA 1W81A 4R1BA 3HN4A 3SRJA 2J8LA 4Z09A 5EOKA 1YXEA 4UAOA 3HMSA 4YIVA 2J8JA 2QJ4A 5CS3A 2KL5A 1NK1A 5CS9A 4Z0DA 3ZWZA 5CS5A 3HMTA 5CP9A 2YIPA 1I8NA 3ZLEA 4A5TS 4R1CA 4APMA 2X2ZA 4Z0EA 1Z40A 2Q8AA 1HKYA 2Z8VA 5CT3A 3SP8A 4Z0FA 2F83A 5CT2A 2HGFA 4R19A 5CT1A 2Y8RA 2LL4M 1GMOA 3MKPA 4UV6A 4APLA 2QJ2A 1BHTA 4R1AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GMN A;  5CS1 A;  2Z8W A;  2K13 X;  2YIO A;  3HMR A;  5EOD A;  5I25 A;  2YIL A;  2Q8B A;  2LL3 A;  1GP9 A;  5COE A;  5CSQ A;  4IUA A;  1W8K A;  3SRI A;  4DUR A;  1W81 A;  4R1B A;  3HN4 A;  3SRJ A;  2J8L A;  4Z09 A;  5EOK A;  1YXE A;  4UAO A;  3HMS A;  2J8J A;  2QJ4 A;  5CS3 A;  4Z0D A;  1NK1 A;  5CS9 A;  3ZWZ A;  5CS5 A;  3HMT A;  5CP9 A;  2YIP A;  1I8N A;  3ZLE A;  4A5T S;  4R1C A;  4APM A;  2X2Z A;  4Z0E A;  1Z40 A;  2Q8A A;  1HKY A;  2Z8V A;  5CT3 A;  3SP8 A;  4Z0F A;  2F83 A;  5CT2 A;  2HGF A;  4R19 A;  5CT1 A;  2Y8R A;  2LL4 M;  1GMO A;  3MKP A;  4UV6 A;  4APL A;  2QJ2 A;  1BHT A;  4R1A A; 
#chains in the Genus database with same CATH topology
 1GMN A;  5CS1 A;  2Z8W A;  2K13 X;  2YIO A;  3HMR A;  5EOD A;  5I25 A;  2YIL A;  4YIZ A;  2Q8B A;  2LL3 A;  1GP9 A;  5COE A;  5CSQ A;  4IUA A;  1W8K A;  3SRI A;  4DUR A;  1W81 A;  4R1B A;  3HN4 A;  3SRJ A;  2J8L A;  4Z09 A;  5EOK A;  1YXE A;  4UAO A;  3HMS A;  4YIV A;  2J8J A;  2QJ4 A;  5CS3 A;  2KL5 A;  1NK1 A;  5CS9 A;  4Z0D A;  3ZWZ A;  5CS5 A;  3HMT A;  5CP9 A;  2YIP A;  1I8N A;  3ZLE A;  4A5T S;  4R1C A;  4APM A;  2X2Z A;  4Z0E A;  1Z40 A;  2Q8A A;  1HKY A;  2Z8V A;  5CT3 A;  3SP8 A;  4Z0F A;  2F83 A;  5CT2 A;  2HGF A;  4R19 A;  5CT1 A;  2Y8R A;  2LL4 M;  1GMO A;  3MKP A;  4UV6 A;  4APL A;  2QJ2 A;  1BHT A;  4R1A A; 
#chains in the Genus database with same CATH homology
 1GMN A;  5CS1 A;  2Z8W A;  2K13 X;  2YIO A;  3HMR A;  5EOD A;  5I25 A;  2YIL A;  4YIZ A;  2Q8B A;  2LL3 A;  1GP9 A;  5COE A;  5CSQ A;  4IUA A;  1W8K A;  3SRI A;  4DUR A;  1W81 A;  4R1B A;  3HN4 A;  3SRJ A;  2J8L A;  4Z09 A;  5EOK A;  1YXE A;  4UAO A;  3HMS A;  4YIV A;  2J8J A;  2QJ4 A;  5CS3 A;  2KL5 A;  1NK1 A;  5CS9 A;  4Z0D A;  3ZWZ A;  5CS5 A;  3HMT A;  5CP9 A;  2YIP A;  1I8N A;  3ZLE A;  4A5T S;  4R1C A;  4APM A;  2X2Z A;  4Z0E A;  1Z40 A;  2Q8A A;  1HKY A;  2Z8V A;  5CT3 A;  3SP8 A;  4Z0F A;  2F83 A;  5CT2 A;  2HGF A;  4R19 A;  5CT1 A;  2Y8R A;  2LL4 M;  1GMO A;  3MKP A;  4UV6 A;  4APL A;  2QJ2 A;  1BHT A;  4R1A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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