4UV6A

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
346
structure length
336
Chain Sequence
SNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEEELTDYEKIQEGFRQNNRDMIKSAFLPVSDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEFPGLEQKLISEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Plasmodium Knowlesi Apical Membrane Antigen 1 and its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
molecule tags Cell invasion
source organism Plasmodium knowlesi
molecule keywords APICAL MEROZOITE ANTIGEN 1
total genus 99
structure length 336
sequence length 346
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uv6A01
3ZWZA 2YIOA 1NK1A 5I25A 4IUAA 2YIPA 4Z0EA 2LL4M 4APLA 3MKPA 3HN4A 4R19A 5CS3A 2J8JA 2Z8WA 1W8KA 3HMSA 2Y8RA 4R1BA 4UAOA 5CT2A 5CP9A 5CS1A 2QJ2A 5CT3A 5EOKA 4DURA 3SRJA 1HKYA 1I8NA 2Q8AA 2F83A 2LL3A 1W81A 1YXEA 1GP9A 2Q8BA 2X2ZA 4Z09A 5COEA 2Z8VA 3HMRA 4R1AA 2YILA 2K13X 3SP8A 4UV6A 1Z40A 5CS5A 3SRIA 4APMA 1BHTA 2QJ4A 4R1CA 1GMNA 5CS9A 5EODA 3HMTA 4A5TS 5CT1A 4Z0FA 5CSQA 1GMOA 2HGFA 3ZLEA 2J8LA 4Z0DA
chains in the Genus database with same CATH superfamily
4YIVA 3ZWZA 2YIOA 1NK1A 5I25A 4IUAA 2YIPA 4Z0EA 2LL4M 4APLA 2KL5A 3HN4A 3MKPA 4R19A 2J8JA 2Z8WA 1W8KA 3HMSA 2Y8RA 4R1BA 4UAOA 5CS3A 5CP9A 5CS1A 2QJ2A 5CT2A 5CT3A 5EOKA 4DURA 3SRJA 1HKYA 4YIZA 1I8NA 2Q8AA 2F83A 2LL3A 1W81A 1YXEA 1GP9A 2Q8BA 2X2ZA 4Z09A 5COEA 2Z8VA 3HMRA 4R1AA 2YILA 2K13X 3SP8A 4UV6A 1Z40A 5CS5A 3SRIA 4APMA 1BHTA 2QJ4A 4R1CA 1GMNA 5CS9A 5EODA 3HMTA 4A5TS 5CT1A 4Z0FA 5CSQA 1GMOA 2HGFA 3ZLEA 2J8LA 4Z0DA
chains in the Genus database with same CATH topology
4YIVA 3ZWZA 2YIOA 1NK1A 5I25A 4IUAA 2YIPA 4Z0EA 2LL4M 4APLA 2KL5A 3HN4A 3MKPA 4R19A 2J8JA 2Z8WA 1W8KA 3HMSA 2Y8RA 4R1BA 4UAOA 5CS3A 5CP9A 5CS1A 2QJ2A 5CT2A 5CT3A 5EOKA 4DURA 3SRJA 1HKYA 4YIZA 1I8NA 2Q8AA 2F83A 2LL3A 1W81A 1YXEA 1GP9A 2Q8BA 2X2ZA 4Z09A 5COEA 2Z8VA 3HMRA 4R1AA 2YILA 2K13X 3SP8A 4UV6A 1Z40A 5CS5A 3SRIA 4APMA 1BHTA 2QJ4A 4R1CA 1GMNA 5CS9A 5EODA 3HMTA 4A5TS 5CT1A 4Z0FA 5CSQA 1GMOA 2HGFA 3ZLEA 2J8LA 4Z0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZWZ A;  2YIO A;  1NK1 A;  5I25 A;  4IUA A;  2YIP A;  4Z0E A;  2LL4 M;  4APL A;  3MKP A;  3HN4 A;  4R19 A;  5CS3 A;  2J8J A;  2Z8W A;  1W8K A;  3HMS A;  2Y8R A;  4R1B A;  4UAO A;  5CT2 A;  5CP9 A;  5CS1 A;  2QJ2 A;  5CT3 A;  5EOK A;  4DUR A;  3SRJ A;  1HKY A;  1I8N A;  2Q8A A;  2F83 A;  2LL3 A;  1W81 A;  1YXE A;  1GP9 A;  2Q8B A;  2X2Z A;  4Z09 A;  5COE A;  2Z8V A;  3HMR A;  4R1A A;  2YIL A;  2K13 X;  3SP8 A;  4UV6 A;  1Z40 A;  5CS5 A;  3SRI A;  4APM A;  1BHT A;  2QJ4 A;  4R1C A;  1GMN A;  5CS9 A;  5EOD A;  3HMT A;  4A5T S;  5CT1 A;  4Z0F A;  5CSQ A;  1GMO A;  2HGF A;  3ZLE A;  2J8L A;  4Z0D A; 
#chains in the Genus database with same CATH topology
 4YIV A;  3ZWZ A;  2YIO A;  1NK1 A;  5I25 A;  4IUA A;  2YIP A;  4Z0E A;  2LL4 M;  4APL A;  2KL5 A;  3HN4 A;  3MKP A;  4R19 A;  2J8J A;  2Z8W A;  1W8K A;  3HMS A;  2Y8R A;  4R1B A;  4UAO A;  5CS3 A;  5CP9 A;  5CS1 A;  2QJ2 A;  5CT2 A;  5CT3 A;  5EOK A;  4DUR A;  3SRJ A;  1HKY A;  4YIZ A;  1I8N A;  2Q8A A;  2F83 A;  2LL3 A;  1W81 A;  1YXE A;  1GP9 A;  2Q8B A;  2X2Z A;  4Z09 A;  5COE A;  2Z8V A;  3HMR A;  4R1A A;  2YIL A;  2K13 X;  3SP8 A;  4UV6 A;  1Z40 A;  5CS5 A;  3SRI A;  4APM A;  1BHT A;  2QJ4 A;  4R1C A;  1GMN A;  5CS9 A;  5EOD A;  3HMT A;  4A5T S;  5CT1 A;  4Z0F A;  5CSQ A;  1GMO A;  2HGF A;  3ZLE A;  2J8L A;  4Z0D A; 
#chains in the Genus database with same CATH homology
 4YIV A;  3ZWZ A;  2YIO A;  1NK1 A;  5I25 A;  4IUA A;  2YIP A;  4Z0E A;  2LL4 M;  4APL A;  2KL5 A;  3HN4 A;  3MKP A;  4R19 A;  2J8J A;  2Z8W A;  1W8K A;  3HMS A;  2Y8R A;  4R1B A;  4UAO A;  5CS3 A;  5CP9 A;  5CS1 A;  2QJ2 A;  5CT2 A;  5CT3 A;  5EOK A;  4DUR A;  3SRJ A;  1HKY A;  4YIZ A;  1I8N A;  2Q8A A;  2F83 A;  2LL3 A;  1W81 A;  1YXE A;  1GP9 A;  2Q8B A;  2X2Z A;  4Z09 A;  5COE A;  2Z8V A;  3HMR A;  4R1A A;  2YIL A;  2K13 X;  3SP8 A;  4UV6 A;  1Z40 A;  5CS5 A;  3SRI A;  4APM A;  1BHT A;  2QJ4 A;  4R1C A;  1GMN A;  5CS9 A;  5EOD A;  3HMT A;  4A5T S;  5CT1 A;  4Z0F A;  5CSQ A;  1GMO A;  2HGF A;  3ZLE A;  2J8L A;  4Z0D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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