4UV6A

Crystal structure of apical membrane antigen 1 from plasmodium knowlesi
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
346
structure length
336
Chain Sequence
SNPWKAFMEKYDLERAHNSGIRIDLGEDAEVGNSKYRIPAGKCPVFGKGIVIENSKVSFLTPVATGAQRLKEGGFAFPNDHISPITIANLKERYKENADLMKLNDIALCKTHAASFVIAEDQNTNYRHPAVYDEKEKTCYMLYLSAQENMGPRYCSPDDAMFCFKPDKNEKFDNLVYLSKNVRNDWENKCPRKNLGNAKFGLWVDGNCEEIPYVNEVEARSLRECNRIVFEASASDQPRQYEEELTDYEKIQEGFRQNNRDMIKSAFLPVSDNFKSKGRGYNWANFDSVNNKCYIFNTKPTCLINDKNFFATTALSHPQEVDNEFPGLEQKLISEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords APICAL MEROZOITE ANTIGEN 1
publication title Crystal Structure of Plasmodium Knowlesi Apical Membrane Antigen 1 and its Complex with an Invasion-Inhibitory Monoclonal Antibody.
pubmed doi rcsb
source organism Plasmodium knowlesi
molecule tags Cell invasion
total genus 99
structure length 336
sequence length 346
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-08-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 4uv6A01
1HKYA 3SP8A 1Z40A 2QJ4A 1GP9A 2K13X 2Y8RA 3HMTA 2QJ2A 1I8NA 5CS1A 3HN4A 3SRJA 2X2ZA 3ZLEA 5CT1A 3HMRA 5CP9A 2YILA 4IUAA 4Z0DA 1W81A 5EOKA 2F83A 3MKPA 5CS9A 2YIPA 5CT2A 1YXEA 2HGFA 1W8KA 2LL4M 2Q8AA 2Z8WA 4R1AA 4APMA 4A5TS 2Z8VA 5CS3A 2J8LA 4APLA 4Z0FA 1NK1A 5I25A 5CSQA 3HMSA 4R1CA 4DURA 4R1BA 2J8JA 5CS5A 2YIOA 5COEA 2Q8BA 4Z09A 4R19A 1GMNA 4UAOA 3ZWZA 3SRIA 4UV6A 1GMOA 5EODA 2LL3A 4Z0EA 1BHTA 5CT3A
chains in the Genus database with same CATH superfamily
1HKYA 3SP8A 1Z40A 2QJ4A 1GP9A 2K13X 2Y8RA 3HMTA 1I8NA 2QJ2A 5CS1A 3HN4A 3SRJA 2X2ZA 3ZLEA 5CT1A 3HMRA 5CP9A 2YILA 4IUAA 4Z0DA 2KL5A 1W81A 5EOKA 2F83A 3MKPA 5CS9A 2YIPA 5CT2A 1YXEA 2HGFA 1W8KA 2LL4M 2Q8AA 2Z8WA 4R1AA 4APMA 4A5TS 2Z8VA 5CS3A 2J8LA 4APLA 4Z0FA 1NK1A 5I25A 5CSQA 3HMSA 4R1CA 4YIZA 4DURA 4R1BA 2J8JA 5CS5A 2YIOA 5COEA 2Q8BA 4Z09A 4R19A 1GMNA 4UAOA 3ZWZA 3SRIA 4UV6A 1GMOA 4YIVA 2LL3A 5EODA 4Z0EA 1BHTA 5CT3A
chains in the Genus database with same CATH topology
1HKYA 3SP8A 1Z40A 2QJ4A 1GP9A 2K13X 2Y8RA 3HMTA 1I8NA 2QJ2A 5CS1A 3HN4A 3SRJA 2X2ZA 3ZLEA 5CT1A 3HMRA 5CP9A 2YILA 4IUAA 4Z0DA 2KL5A 1W81A 5EOKA 2F83A 3MKPA 5CS9A 2YIPA 5CT2A 1YXEA 2HGFA 1W8KA 2LL4M 2Q8AA 2Z8WA 4R1AA 4APMA 4A5TS 2Z8VA 5CS3A 2J8LA 4APLA 4Z0FA 1NK1A 5I25A 5CSQA 3HMSA 4R1CA 4YIZA 4DURA 4R1BA 2J8JA 5CS5A 2YIOA 5COEA 2Q8BA 4Z09A 4R19A 1GMNA 4UAOA 3ZWZA 3SRIA 4UV6A 1GMOA 4YIVA 2LL3A 5EODA 4Z0EA 1BHTA 5CT3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HKY A;  3SP8 A;  1Z40 A;  2QJ4 A;  1GP9 A;  2K13 X;  2Y8R A;  3HMT A;  2QJ2 A;  1I8N A;  5CS1 A;  3HN4 A;  3SRJ A;  2X2Z A;  3ZLE A;  5CT1 A;  3HMR A;  5CP9 A;  2YIL A;  4IUA A;  4Z0D A;  1W81 A;  5EOK A;  2F83 A;  3MKP A;  5CS9 A;  2YIP A;  5CT2 A;  1YXE A;  2HGF A;  1W8K A;  2LL4 M;  2Q8A A;  2Z8W A;  4R1A A;  4APM A;  4A5T S;  2Z8V A;  5CS3 A;  2J8L A;  4APL A;  4Z0F A;  1NK1 A;  5I25 A;  5CSQ A;  3HMS A;  4R1C A;  4DUR A;  4R1B A;  2J8J A;  5CS5 A;  2YIO A;  5COE A;  2Q8B A;  4Z09 A;  4R19 A;  1GMN A;  4UAO A;  3ZWZ A;  3SRI A;  4UV6 A;  1GMO A;  5EOD A;  2LL3 A;  4Z0E A;  1BHT A;  5CT3 A; 
#chains in the Genus database with same CATH topology
 1HKY A;  3SP8 A;  1Z40 A;  2QJ4 A;  1GP9 A;  2K13 X;  2Y8R A;  3HMT A;  1I8N A;  2QJ2 A;  5CS1 A;  3HN4 A;  3SRJ A;  2X2Z A;  3ZLE A;  5CT1 A;  3HMR A;  5CP9 A;  2YIL A;  4IUA A;  4Z0D A;  2KL5 A;  1W81 A;  5EOK A;  2F83 A;  3MKP A;  5CS9 A;  2YIP A;  5CT2 A;  1YXE A;  2HGF A;  1W8K A;  2LL4 M;  2Q8A A;  2Z8W A;  4R1A A;  4APM A;  4A5T S;  2Z8V A;  5CS3 A;  2J8L A;  4APL A;  4Z0F A;  1NK1 A;  5I25 A;  5CSQ A;  3HMS A;  4R1C A;  4YIZ A;  4DUR A;  4R1B A;  2J8J A;  5CS5 A;  2YIO A;  5COE A;  2Q8B A;  4Z09 A;  4R19 A;  1GMN A;  4UAO A;  3ZWZ A;  3SRI A;  4UV6 A;  1GMO A;  4YIV A;  2LL3 A;  5EOD A;  4Z0E A;  1BHT A;  5CT3 A; 
#chains in the Genus database with same CATH homology
 1HKY A;  3SP8 A;  1Z40 A;  2QJ4 A;  1GP9 A;  2K13 X;  2Y8R A;  3HMT A;  1I8N A;  2QJ2 A;  5CS1 A;  3HN4 A;  3SRJ A;  2X2Z A;  3ZLE A;  5CT1 A;  3HMR A;  5CP9 A;  2YIL A;  4IUA A;  4Z0D A;  2KL5 A;  1W81 A;  5EOK A;  2F83 A;  3MKP A;  5CS9 A;  2YIP A;  5CT2 A;  1YXE A;  2HGF A;  1W8K A;  2LL4 M;  2Q8A A;  2Z8W A;  4R1A A;  4APM A;  4A5T S;  2Z8V A;  5CS3 A;  2J8L A;  4APL A;  4Z0F A;  1NK1 A;  5I25 A;  5CSQ A;  3HMS A;  4R1C A;  4YIZ A;  4DUR A;  4R1B A;  2J8J A;  5CS5 A;  2YIO A;  5COE A;  2Q8B A;  4Z09 A;  4R19 A;  1GMN A;  4UAO A;  3ZWZ A;  3SRI A;  4UV6 A;  1GMO A;  4YIV A;  2LL3 A;  5EOD A;  4Z0E A;  1BHT A;  5CT3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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