4UVMA

In meso crystal structure of the pot family transporter peptso
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
505
structure length
505
Chain Sequence
PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords GLUTATHIONE UPTAKE TRANSPORTER
publication title Gating Topology of the Proton-Coupled Oligopeptide Symporters.
pubmed doi rcsb
source organism Shewanella oneidensis
total genus 188
structure length 505
sequence length 505
ec nomenclature
pdb deposition date 2014-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4uvmA00
4IKXA 4IU8A 4LEPA 4GC0A 3O7PA 4YBQA 4JA3A 2CFPA 4XNJA 4J05A 4U4WA 4JREA 4PYPA 4JR9A 5EQHA 2V8NA 4OH3A 4Q65A 5A2NA 5GXBA 4ZWCA 1PV7A 5D6KA 4GBYA 5EQGA 4APSA 1PW4A 4D2BA 5D59A 4ZW9A 4D2DA 4UVMA 4XNIA 4TPJA 1PV6A 4IKYA 4QIQA 4ZWBA 4W6VA 4IU9A 5EQIA 2CFQA 4D2CA 4OAAA 4IKZA 4TPHA 5A2OA 3O7QA 4GBZA 4LDSA 4IKVA 4U4VA 4U4TA 5D58A 4IKWA 5C65A 2XUTA 4ZYRA 4YB9D 4TPGA 3WDOA 2Y5YA
chains in the Genus database with same CATH superfamily
4BY1D 1EERA 4BBSD 1M4BA 1BBNA 1AXIA 4OAAA 1IARA 3OQ3A 1M49A 5C65A 2LAGA 4DKDA 2JA6D 1BP3A 3HOXD 1ITFA 2CFPA 2B8UA 5D6KA 3UX9A 4A3ED 1M4AA 3UEZE 3N06A 4ZS7A 4WRLB 4ZW9A 2JA5D 4YQXA 4LRLA 1LKIA 1HULA 5A2OA 1VLKA 3NPZA 3DI3A 1HWHA 4A3JD 4X51A 2R93D 4PYPA 5D28B 2B8XA 1PW4A 1LQSL 1HZIA 4IKYA 3MZGA 2Q7NB 1KF9A 1RW5A 1M4CA 1HUWA 2B91A 1AU1A 1AX8A 3IRHA 4O9HA 4GC0A 4YBQA 4NI9A 2C35A 3EW3A 4YDYI 3QAZA 4A3KD 3DGCL 1P9MB 1M48A 1EKUA 4ZF7A 1RCBA 2CFQA 4BXXD 5IYCD 3I4MD 2Y5YA 4EXNA 2O26A 4IU8A 3OG6A 4GRWA 4NN5A 5E4EA 2V8NA 4YUEC 3QWRB 1F6FA 4D2DA 1PV6A 2ERJD 4FA8E 1I1RB 3PO2D 4DKEA 2Z3RA 3PIWA 4Z5RD 1CSGA 1F45B 2GMFA 3NCCA 5C44D 4DOHA 5D70A 3DUHC 4JA3A 1LK3A 3HHRA 3BPNA 1PY2A 4NEMA 3FKID 3S9DA 4APSA 1Y6NL 2B63D 3HOYD 2O27A 1HIJA 2Q14A 3SE4B 4TPHA 4GBZA 4U4TA 4GS7A 4EXPA 1IL6A 5IP7D 3G6DA 3HOUD 2B8YA 1YKBA 4NEJA 4J4LC 1PW6A 2OQPA 3D48P 4PS4A 2L3YA 5C3ED 1J7VL 4DKFA 3NCEA 3D85C 4W6VA 3VA2A 1M47A 2E9WC 5FLMD 1QVNA 2XQBA 1CYLA 1HGUA 3WCYI 5IP9D 1INRA 4J05A 1IJZA 4Q65A 1CD9A 3TGXB 3HHCA 3N0PA 1BGDA 3HOZD 1PGRA 2R7ZD 3DI2A 3HOVD 4NN7A 4ZYRA 3LB6B 2CYKA 4IKXA 4LEPA 5D71A 1WCMD 3B5KA 2JA7D 4XNJA 4A3GD 1EXZA 2B90A 5FHXA 4CNIC 2ILKA 2R92D 4RS1A 3BESL 3QB7A 4A3ID 1NBPA 1ILKA 5D72A 5D58A 1RHGA 1BGEA 1EVSA 4A3LD 5GXBA 4NKQC 1EMRA 4D2BA 1M4RA 3D87A 4I77Z 4YPGC 1A7MA 3BPOA 1FG9A 2Q98A 4TPGA 4TPJA 3I4ND 4A3BD 1HWGA 1PV7A 2PSMA 3HMXB 1Z92A 4XNIA 1IRLA 4ZWBA 3G9VB 5EQIA 5KNHI 5L6YC 2Z3QA 4O6KA 2XUTA 1V7NV 2L3OA 5IYDD 3INKC 4A93D 5LQBA 4BBRD 1GNCA 1Y1WD 3QT2C 4NI7A 4QIQA 4IU9A 1Y14A 1FYHA 3EJJA 2H24A 1V7MV 1D9GA 3BPLA 5EQHA 4OH3A 5A2NA 3PIVA 4A3MD 1Y6ML 4GBYA 3H3VE 2KZ1A 1BCNA 3LB6A 3L5XA 2IL6A 3QB1A 5C4XD 1ETEA 3NCBA 3OG4A 3PO3D 4YB9D 3WDOA 5D22A 3HOWD 5FUCA 1RFBA 4JR9A 2D9QA 5TS9A 3AYHA 1B5LA 4NN6A 3H0GD 2B5IA 2O6IA 4U4VA 4IKVA 2JA8D 1BGCA 1ITIA 3Q1SI 2VUMD 1N1FA 1ITMA 4U4WA 1WU3I 1Y1VD 4DKCA 2INTA 3UF2A 3NCFA 1IK0A 1CNT1 1A22A 5EQGA 5IYBD 4BY7D 3SE3B 5D59A 4UVMA 2LMSA 4D2CA 4IKZA 4A3FD 1Y6KL 4IKWA 4A3CD 5C7XA 1D9CA 1JLIA 2B8ZA 3DLQI 3O7PA 4MHLA 1BUYA 1PVHB 4JREA 1Z7CA 4ZWCA 1SCFA 1CN4C 2HYMB 3L5WI 1ITLA 1HIKA 1GA3A 3O7QA 4LDSA 3UF5A 2D48A 4A3DD 1ALUA
chains in the Genus database with same CATH topology
4IKXA 4IU8A 4LEPA 4GC0A 3O7PA 4YBQA 4JA3A 2CFPA 4XNJA 4J05A 4U4WA 4JREA 4PYPA 4JR9A 5EQHA 2V8NA 4OH3A 4Q65A 5A2NA 5GXBA 4ZWCA 1PV7A 5D6KA 4GBYA 5EQGA 4APSA 1PW4A 4D2BA 5D59A 4ZW9A 4D2DA 4UVMA 4XNIA 4TPJA 1PV6A 4IKYA 4QIQA 4ZWBA 4W6VA 4IU9A 5EQIA 2CFQA 4D2CA 4OAAA 4IKZA 4TPHA 5A2OA 3O7QA 4GBZA 4LDSA 4IKVA 4U4VA 4U4TA 5D58A 4IKWA 5C65A 2XUTA 4ZYRA 4YB9D 4TPGA 3WDOA 2Y5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IKX A;  4IU8 A;  4LEP A;  4GC0 A;  3O7P A;  4YBQ A;  4JA3 A;  2CFP A;  4XNJ A;  4J05 A;  4U4W A;  4JRE A;  4PYP A;  4JR9 A;  5EQH A;  2V8N A;  4OH3 A;  4Q65 A;  5A2N A;  5GXB A;  4ZWC A;  1PV7 A;  5D6K A;  4GBY A;  5EQG A;  4APS A;  1PW4 A;  4D2B A;  5D59 A;  4ZW9 A;  4D2D A;  4UVM A;  4XNI A;  4TPJ A;  1PV6 A;  4IKY A;  4QIQ A;  4ZWB A;  4W6V A;  4IU9 A;  5EQI A;  2CFQ A;  4D2C A;  4OAA A;  4IKZ A;  4TPH A;  5A2O A;  3O7Q A;  4GBZ A;  4LDS A;  4IKV A;  4U4V A;  4U4T A;  5D58 A;  4IKW A;  5C65 A;  2XUT A;  4ZYR A;  4YB9 D;  4TPG A;  3WDO A;  2Y5Y A; 
#chains in the Genus database with same CATH topology
 4BY1 D;  1EER A;  4BBS D;  1M4B A;  1BBN A;  1AXI A;  4OAA A;  1IAR A;  3OQ3 A;  1M49 A;  5C65 A;  2LAG A;  4DKD A;  2JA6 D;  1BP3 A;  3HOX D;  1ITF A;  2CFP A;  2B8U A;  5D6K A;  3UX9 A;  4A3E D;  1M4A A;  3UEZ E;  3N06 A;  4ZS7 A;  4WRL B;  4ZW9 A;  2JA5 D;  4YQX A;  4LRL A;  1LKI A;  1HUL A;  5A2O A;  1VLK A;  3NPZ A;  3DI3 A;  1HWH A;  4A3J D;  4X51 A;  2R93 D;  4PYP A;  5D28 B;  2B8X A;  1PW4 A;  1LQS L;  1HZI A;  4IKY A;  3MZG A;  2Q7N B;  1KF9 A;  1RW5 A;  1M4C A;  1HUW A;  2B91 A;  1AU1 A;  1AX8 A;  3IRH A;  4O9H A;  4GC0 A;  4YBQ A;  4NI9 A;  2C35 A;  3EW3 A;  4YDY I;  3QAZ A;  4A3K D;  3DGC L;  1P9M B;  1M48 A;  1EKU A;  4ZF7 A;  1RCB A;  2CFQ A;  4BXX D;  5IYC D;  3I4M D;  2Y5Y A;  4EXN A;  2O26 A;  4IU8 A;  3OG6 A;  4GRW A;  4NN5 A;  5E4E A;  2V8N A;  4YUE C;  3QWR B;  1F6F A;  4D2D A;  1PV6 A;  2ERJ D;  4FA8 E;  1I1R B;  3PO2 D;  4DKE A;  2Z3R A;  3PIW A;  4Z5R D;  1CSG A;  1F45 B;  2GMF A;  3NCC A;  5C44 D;  4DOH A;  5D70 A;  3DUH C;  4JA3 A;  1LK3 A;  3HHR A;  3BPN A;  1PY2 A;  4NEM A;  3FKI D;  3S9D A;  4APS A;  1Y6N L;  2B63 D;  3HOY D;  2O27 A;  1HIJ A;  2Q14 A;  3SE4 B;  4TPH A;  4GBZ A;  4U4T A;  4GS7 A;  4EXP A;  1IL6 A;  5IP7 D;  3G6D A;  3HOU D;  2B8Y A;  1YKB A;  4NEJ A;  4J4L C;  1PW6 A;  2OQP A;  3D48 P;  4PS4 A;  2L3Y A;  5C3E D;  1J7V L;  4DKF A;  3NCE A;  3D85 C;  4W6V A;  3VA2 A;  1M47 A;  2E9W C;  5FLM D;  1QVN A;  2XQB A;  1CYL A;  1HGU A;  3WCY I;  5IP9 D;  1INR A;  4J05 A;  1IJZ A;  4Q65 A;  1CD9 A;  3TGX B;  3HHC A;  3N0P A;  1BGD A;  3HOZ D;  1PGR A;  2R7Z D;  3DI2 A;  3HOV D;  4NN7 A;  4ZYR A;  3LB6 B;  2CYK A;  4IKX A;  4LEP A;  5D71 A;  1WCM D;  3B5K A;  2JA7 D;  4XNJ A;  4A3G D;  1EXZ A;  2B90 A;  5FHX A;  4CNI C;  2ILK A;  2R92 D;  4RS1 A;  3BES L;  3QB7 A;  4A3I D;  1NBP A;  1ILK A;  5D72 A;  5D58 A;  1RHG A;  1BGE A;  1EVS A;  4A3L D;  5GXB A;  4NKQ C;  1EMR A;  4D2B A;  1M4R A;  3D87 A;  4I77 Z;  4YPG C;  1A7M A;  3BPO A;  1FG9 A;  2Q98 A;  4TPG A;  4TPJ A;  3I4N D;  4A3B D;  1HWG A;  1PV7 A;  2PSM A;  3HMX B;  1Z92 A;  4XNI A;  1IRL A;  4ZWB A;  3G9V B;  5EQI A;  5KNH I;  5L6Y C;  2Z3Q A;  4O6K A;  2XUT A;  1V7N V;  2L3O A;  5IYD D;  3INK C;  4A93 D;  5LQB A;  4BBR D;  1GNC A;  1Y1W D;  3QT2 C;  4NI7 A;  4QIQ A;  4IU9 A;  1Y14 A;  1FYH A;  3EJJ A;  2H24 A;  1V7M V;  1D9G A;  3BPL A;  5EQH A;  4OH3 A;  5A2N A;  3PIV A;  4A3M D;  1Y6M L;  4GBY A;  3H3V E;  2KZ1 A;  1BCN A;  3LB6 A;  3L5X A;  2IL6 A;  3QB1 A;  5C4X D;  1ETE A;  3NCB A;  3OG4 A;  3PO3 D;  4YB9 D;  3WDO A;  5D22 A;  3HOW D;  5FUC A;  1RFB A;  4JR9 A;  2D9Q A;  5TS9 A;  3AYH A;  1B5L A;  4NN6 A;  3H0G D;  2B5I A;  2O6I A;  4U4V A;  4IKV A;  2JA8 D;  1BGC A;  1ITI A;  3Q1S I;  2VUM D;  1N1F A;  1ITM A;  4U4W A;  1WU3 I;  1Y1V D;  4DKC A;  2INT A;  3UF2 A;  3NCF A;  1IK0 A;  1CNT 1;  1A22 A;  5EQG A;  5IYB D;  4BY7 D;  3SE3 B;  5D59 A;  4UVM A;  2LMS A;  4D2C A;  4IKZ A;  4A3F D;  1Y6K L;  4IKW A;  4A3C D;  5C7X A;  1D9C A;  1JLI A;  2B8Z A;  3DLQ I;  3O7P A;  4MHL A;  1BUY A;  1PVH B;  4JRE A;  1Z7C A;  4ZWC A;  1SCF A;  1CN4 C;  2HYM B;  3L5W I;  1ITL A;  1HIK A;  1GA3 A;  3O7Q A;  4LDS A;  3UF5 A;  2D48 A;  4A3D D;  1ALU A; 
#chains in the Genus database with same CATH homology
 4IKX A;  4IU8 A;  4LEP A;  4GC0 A;  3O7P A;  4YBQ A;  4JA3 A;  2CFP A;  4XNJ A;  4J05 A;  4U4W A;  4JRE A;  4PYP A;  4JR9 A;  5EQH A;  2V8N A;  4OH3 A;  4Q65 A;  5A2N A;  5GXB A;  4ZWC A;  1PV7 A;  5D6K A;  4GBY A;  5EQG A;  4APS A;  1PW4 A;  4D2B A;  5D59 A;  4ZW9 A;  4D2D A;  4UVM A;  4XNI A;  4TPJ A;  1PV6 A;  4IKY A;  4QIQ A;  4ZWB A;  4W6V A;  4IU9 A;  5EQI A;  2CFQ A;  4D2C A;  4OAA A;  4IKZ A;  4TPH A;  5A2O A;  3O7Q A;  4GBZ A;  4LDS A;  4IKV A;  4U4V A;  4U4T A;  5D58 A;  4IKW A;  5C65 A;  2XUT A;  4ZYR A;  4YB9 D;  4TPG A;  3WDO A;  2Y5Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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