4UY8F

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
177
structure length
177
Chain Sequence
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
total genus 36
structure length 177
sequence length 177
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00281 Ribosomal_L5 Ribosomal protein L5
F PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 4uy8F00
3G6ED 3I56D 1M1KF 2QEXD 1IQ4A 1YJ9D 3G4SD 5GADF 4IOAD 5MLCG 5H1SH 1S72D 5DM6D 3G71D 5GAGF 1Q86F 2QA4D 1YITD 1VQ5D 5HL7D 3CCQD 5JVGD 4IO9D 3CCJD 3CPWD 4WF9D 1VQKD 3CMED 1VQ6D 1MJIA 1JJ2D 4WCED 1VQ8D 5DM7D 2ZJPD 2OTLD 3CD6D 1YIJD 3CC7D 4IOCD 1VQ4D 2OGKA 1Q7YF 1M90F 1Q82F 3CXCD 3J7ZF 3CCUD 4U67D 3CCMD 3PIOD 1NJIF 2ZJRD 3CCLD 4WFBD 2ZJQD 1K9MF 1VQPD 1YHQD 1W2BD 1VQOD 4WFAD 3CF5D 2PZZA 1QVGD 2OTJD 3PIPD 1KC8F 5GAHF 5GAEF 3CCED 1YI2D 2NWUA 1Q81F 3CCSD 1VQND 3CCRD 4UY8F 3CC2D 3D7AA 1QVFD 2NRQA 1VQLD 1YJND 1K73F 3C9GA 4WFND 1VQ9D 1K8AF 3DLLD 2WNYA 3CCVD 1N8RF 1KD1F 1VQ7D 5JVHD 3OW2D 1YJWD 1VQMD 3CC4D 3CMAD 1KQSD 3I55D
chains in the Genus database with same CATH superfamily
3G6ED 3I56D 1M1KF 2QEXD 1IQ4A 1YJ9D 3G4SD 5GADF 4IOAD 5MLCG 5H1SH 1S72D 5DM6D 3G71D 5GAGF 1Q86F 2QA4D 1YITD 1VQ5D 5HL7D 3CCQD 5JVGD 4IO9D 3CCJD 3CPWD 4WF9D 1VQKD 3CMED 1VQ6D 1MJIA 1JJ2D 4WCED 1VQ8D 5DM7D 2ZJPD 2OTLD 3CD6D 1YIJD 3CC7D 4IOCD 1VQ4D 2OGKA 1Q7YF 1M90F 1Q82F 3CXCD 3J7ZF 3CCUD 4U67D 3CCMD 3PIOD 1NJIF 2ZJRD 3CCLD 4WFBD 2ZJQD 1K9MF 1VQPD 1YHQD 1W2BD 1VQOD 4WFAD 3CF5D 2PZZA 1QVGD 2OTJD 3PIPD 1KC8F 5GAHF 5GAEF 3CCED 1YI2D 2NWUA 1Q81F 3CCSD 1VQND 3CCRD 4UY8F 3CC2D 3D7AA 1QVFD 2NRQA 1VQLD 1YJND 1K73F 3C9GA 4WFND 1VQ9D 1K8AF 3DLLD 2WNYA 3CCVD 1N8RF 1KD1F 1VQ7D 5JVHD 3OW2D 1YJWD 1VQMD 3CC4D 3CMAD 1KQSD 3I55D
chains in the Genus database with same CATH topology
3G6ED 3I56D 1M1KF 2QEXD 1IQ4A 1YJ9D 3G4SD 5GADF 4IOAD 5MLCG 5H1SH 1S72D 5DM6D 3G71D 5GAGF 1Q86F 2QA4D 1YITD 1VQ5D 5HL7D 3CCQD 5JVGD 4IO9D 3CCJD 3CPWD 4WF9D 1VQKD 3CMED 1VQ6D 1MJIA 1JJ2D 4WCED 1VQ8D 5DM7D 2ZJPD 2OTLD 3CD6D 1YIJD 3CC7D 4IOCD 1VQ4D 2OGKA 1Q7YF 1M90F 1Q82F 3CXCD 3J7ZF 3CCUD 4U67D 3CCMD 3PIOD 1NJIF 2ZJRD 3CCLD 4WFBD 2ZJQD 1K9MF 1VQPD 1YHQD 1W2BD 1VQOD 4WFAD 3CF5D 2PZZA 1QVGD 2OTJD 3PIPD 1KC8F 5GAHF 5GAEF 3CCED 1YI2D 2NWUA 1Q81F 3CCSD 1VQND 3CCRD 4UY8F 3CC2D 3D7AA 1QVFD 2NRQA 1VQLD 1YJND 1K73F 3C9GA 4WFND 1VQ9D 1K8AF 3DLLD 2WNYA 3CCVD 1N8RF 1KD1F 1VQ7D 5JVHD 3OW2D 1YJWD 1VQMD 3CC4D 3CMAD 1KQSD 3I55D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G6E D;  3I56 D;  1M1K F;  2QEX D;  1IQ4 A;  1YJ9 D;  3G4S D;  5GAD F;  4IOA D;  5MLC G;  5H1S H;  1S72 D;  5DM6 D;  3G71 D;  5GAG F;  1Q86 F;  2QA4 D;  1YIT D;  1VQ5 D;  5HL7 D;  3CCQ D;  5JVG D;  4IO9 D;  3CCJ D;  3CPW D;  4WF9 D;  1VQK D;  3CME D;  1VQ6 D;  1MJI A;  1JJ2 D;  4WCE D;  1VQ8 D;  5DM7 D;  2ZJP D;  2OTL D;  3CD6 D;  1YIJ D;  3CC7 D;  4IOC D;  1VQ4 D;  2OGK A;  1Q7Y F;  1M90 F;  1Q82 F;  3CXC D;  3J7Z F;  3CCU D;  4U67 D;  3CCM D;  3PIO D;  1NJI F;  2ZJR D;  3CCL D;  4WFB D;  2ZJQ D;  1K9M F;  1VQP D;  1YHQ D;  1W2B D;  1VQO D;  4WFA D;  3CF5 D;  2PZZ A;  1QVG D;  2OTJ D;  3PIP D;  1KC8 F;  5GAH F;  5GAE F;  3CCE D;  1YI2 D;  2NWU A;  1Q81 F;  3CCS D;  1VQN D;  3CCR D;  4UY8 F;  3CC2 D;  3D7A A;  1QVF D;  2NRQ A;  1VQL D;  1YJN D;  1K73 F;  3C9G A;  4WFN D;  1VQ9 D;  1K8A F;  3DLL D;  2WNY A;  3CCV D;  1N8R F;  1KD1 F;  1VQ7 D;  5JVH D;  3OW2 D;  1YJW D;  1VQM D;  3CC4 D;  3CMA D;  1KQS D;  3I55 D; 
#chains in the Genus database with same CATH topology
 3G6E D;  3I56 D;  1M1K F;  2QEX D;  1IQ4 A;  1YJ9 D;  3G4S D;  5GAD F;  4IOA D;  5MLC G;  5H1S H;  1S72 D;  5DM6 D;  3G71 D;  5GAG F;  1Q86 F;  2QA4 D;  1YIT D;  1VQ5 D;  5HL7 D;  3CCQ D;  5JVG D;  4IO9 D;  3CCJ D;  3CPW D;  4WF9 D;  1VQK D;  3CME D;  1VQ6 D;  1MJI A;  1JJ2 D;  4WCE D;  1VQ8 D;  5DM7 D;  2ZJP D;  2OTL D;  3CD6 D;  1YIJ D;  3CC7 D;  4IOC D;  1VQ4 D;  2OGK A;  1Q7Y F;  1M90 F;  1Q82 F;  3CXC D;  3J7Z F;  3CCU D;  4U67 D;  3CCM D;  3PIO D;  1NJI F;  2ZJR D;  3CCL D;  4WFB D;  2ZJQ D;  1K9M F;  1VQP D;  1YHQ D;  1W2B D;  1VQO D;  4WFA D;  3CF5 D;  2PZZ A;  1QVG D;  2OTJ D;  3PIP D;  1KC8 F;  5GAH F;  5GAE F;  3CCE D;  1YI2 D;  2NWU A;  1Q81 F;  3CCS D;  1VQN D;  3CCR D;  4UY8 F;  3CC2 D;  3D7A A;  1QVF D;  2NRQ A;  1VQL D;  1YJN D;  1K73 F;  3C9G A;  4WFN D;  1VQ9 D;  1K8A F;  3DLL D;  2WNY A;  3CCV D;  1N8R F;  1KD1 F;  1VQ7 D;  5JVH D;  3OW2 D;  1YJW D;  1VQM D;  3CC4 D;  3CMA D;  1KQS D;  3I55 D; 
#chains in the Genus database with same CATH homology
 3G6E D;  3I56 D;  1M1K F;  2QEX D;  1IQ4 A;  1YJ9 D;  3G4S D;  5GAD F;  4IOA D;  5MLC G;  5H1S H;  1S72 D;  5DM6 D;  3G71 D;  5GAG F;  1Q86 F;  2QA4 D;  1YIT D;  1VQ5 D;  5HL7 D;  3CCQ D;  5JVG D;  4IO9 D;  3CCJ D;  3CPW D;  4WF9 D;  1VQK D;  3CME D;  1VQ6 D;  1MJI A;  1JJ2 D;  4WCE D;  1VQ8 D;  5DM7 D;  2ZJP D;  2OTL D;  3CD6 D;  1YIJ D;  3CC7 D;  4IOC D;  1VQ4 D;  2OGK A;  1Q7Y F;  1M90 F;  1Q82 F;  3CXC D;  3J7Z F;  3CCU D;  4U67 D;  3CCM D;  3PIO D;  1NJI F;  2ZJR D;  3CCL D;  4WFB D;  2ZJQ D;  1K9M F;  1VQP D;  1YHQ D;  1W2B D;  1VQO D;  4WFA D;  3CF5 D;  2PZZ A;  1QVG D;  2OTJ D;  3PIP D;  1KC8 F;  5GAH F;  5GAE F;  3CCE D;  1YI2 D;  2NWU A;  1Q81 F;  3CCS D;  1VQN D;  3CCR D;  4UY8 F;  3CC2 D;  3D7A A;  1QVF D;  2NRQ A;  1VQL D;  1YJN D;  1K73 F;  3C9G A;  4WFN D;  1VQ9 D;  1K8A F;  3DLL D;  2WNY A;  3CCV D;  1N8R F;  1KD1 F;  1VQ7 D;  5JVH D;  3OW2 D;  1YJW D;  1VQM D;  3CC4 D;  3CMA D;  1KQS D;  3I55 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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