4UY8G

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
176
structure length
176
Chain Sequence
SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
total genus 30
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4uy8G02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4uy8G01
3I55E 4IO9E 1RL6A 3CMEE 5HL7E 1N8RG 4WF9E 3CC7E 1VQME 3CC2E 2OTLE 1Q86G 5H1SI 3CCLE 2OTJE 1QVFE 2ZJPE 3CCQE 5GAEG 3G71E 1KQSE 1Q7YG 5GAGG 1Q82G 2QA4E 1YITE 1K73G 3CMAE 3OW2E 2ZJQE 1YJWE 1VQ7E 1VQ9E 5MLCH 1VQLE 4U67E 3G4SE 1Q81G 3CD6E 3CCEE 3CCRE 1YJ9E 3PIPE 1JJ2E 3CXCE 1QVGE 3PIOE 1YIJE 5JVGE 3CCSE 5AN9B 4UY8G 1NJIG 3I56E 1K8AG 5GADG 3CCJE 1VQKE 1YJNE 1YHQE 3CCME 1K9MG 1VQ5E 4WFNE 3CF5E 5DM7E 5DM6E 1W2BE 3G6EE 1VQ4E 4WFAE 1KD1G 1S72E 3CCVE 1VQOE 1VQNE 4IOCE 4IOAE 2ZJRE 1VQ8E 4WFBE 3J7ZG 5GAHG 3CCUE 1VQ6E 2QEXE 4WCEE 3CC4E 1M1KG 3DLLE 1YI2E 2CQLA 3CPWE 1VQPE 1KC8G 5JVHE 1M90G
chains in the Genus database with same CATH superfamily
3I55E 1RJLC 4IO9E 1RL6A 3CMEE 3AUMO 2HKDA 3CKFA 5HL7E 1N8RG 4WF9E 3CC7E 1VQME 1OSPO 3CC2E 2OYBO 2OTLE 2PI3O 1Q86G 5H1SI 3CCLE 2OTJE 1QVFE 2ZJPE 3CCQE 5GAEG 3G71E 1KQSE 1Q7YG 5GAGG 1Q82G 2QA4E 1YITE 1K73G 3CMAE 3OW2E 2ZJQE 1YJWE 2OY5O 1VQ7E 1VQ9E 5MLCH 1VQLE 4U67E 3G4SE 1Q81G 3CD6E 3CCEE 3CCRE 1YJ9E 5B11O 3PIPE 2I5VO 1JJ2E 3CXCE 1QVGE 3PIOE 2OY1O 1YIJE 3IGEA 5JVGE 3CCSE 5AN9B 1P4PA 4UY8G 5B2AO 1NJIG 3I56E 3EC5A 1K8AG 2FKGA 5GADG 3CCJE 1FJ1E 3CKGA 2OY8A 1VQKE 2I5ZO 2AF5A 1YJNE 1YHQE 3CCME 1K9MG 2FKJA 1VQ5E 4WFNE 3CF5E 5DM7E 5DM6E 1W2BE 3G6EE 1VQ4E 4WFAE 1KD1G 2OY7A 1S72E 2OL7A 3CCVE 1VQOE 5B10O 2OL8O 1VQNE 4IOCE 4IOAE 2ZJRE 1VQ8E 2OL6O 4WFBE 3J7ZG 5GAHG 3CCUE 1VQ6E 3IG9A 2QEXE 4WCEE 2G8CO 3CC4E 1M1KG 3DLLE 1YI2E 2CQLA 3CPWE 1VQPE 1KC8G 5B3MO 5JVHE 1M90G
chains in the Genus database with same CATH topology
3I55E 4IO9E 1RL6A 3CMEE 5HL7E 1N8RG 4WF9E 3CC7E 1VQME 3CC2E 2OTLE 1Q86G 5H1SI 3CCLE 2OTJE 1QVFE 2ZJPE 3CCQE 5GAEG 3G71E 1KQSE 1Q7YG 5GAGG 1Q82G 2QA4E 1YITE 1K73G 3CMAE 3OW2E 2ZJQE 1YJWE 1VQ7E 1VQ9E 5MLCH 1VQLE 4U67E 3G4SE 1Q81G 3CD6E 3CCEE 3CCRE 1YJ9E 3PIPE 1JJ2E 3CXCE 1QVGE 3PIOE 1YIJE 5JVGE 3CCSE 5AN9B 4UY8G 1NJIG 3I56E 1K8AG 5GADG 3CCJE 1VQKE 1YJNE 1YHQE 3CCME 1K9MG 1VQ5E 4WFNE 3CF5E 5DM7E 5DM6E 1W2BE 3G6EE 1VQ4E 4WFAE 1KD1G 1S72E 3CCVE 1VQOE 1VQNE 4IOCE 4IOAE 2ZJRE 1VQ8E 4WFBE 3J7ZG 5GAHG 3CCUE 1VQ6E 2QEXE 4WCEE 3CC4E 1M1KG 3DLLE 1YI2E 2CQLA 3CPWE 1VQPE 1KC8G 5JVHE 1M90G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I55 E;  4IO9 E;  1RL6 A;  3CME E;  5HL7 E;  1N8R G;  4WF9 E;  3CC7 E;  1VQM E;  3CC2 E;  2OTL E;  1Q86 G;  5H1S I;  3CCL E;  2OTJ E;  1QVF E;  2ZJP E;  3CCQ E;  5GAE G;  3G71 E;  1KQS E;  1Q7Y G;  5GAG G;  1Q82 G;  2QA4 E;  1YIT E;  1K73 G;  3CMA E;  3OW2 E;  2ZJQ E;  1YJW E;  1VQ7 E;  1VQ9 E;  5MLC H;  1VQL E;  4U67 E;  3G4S E;  1Q81 G;  3CD6 E;  3CCE E;  3CCR E;  1YJ9 E;  3PIP E;  1JJ2 E;  3CXC E;  1QVG E;  3PIO E;  1YIJ E;  5JVG E;  3CCS E;  5AN9 B;  4UY8 G;  1NJI G;  3I56 E;  1K8A G;  5GAD G;  3CCJ E;  1VQK E;  1YJN E;  1YHQ E;  3CCM E;  1K9M G;  1VQ5 E;  4WFN E;  3CF5 E;  5DM7 E;  5DM6 E;  1W2B E;  3G6E E;  1VQ4 E;  4WFA E;  1KD1 G;  1S72 E;  3CCV E;  1VQO E;  1VQN E;  4IOC E;  4IOA E;  2ZJR E;  1VQ8 E;  4WFB E;  3J7Z G;  5GAH G;  3CCU E;  1VQ6 E;  2QEX E;  4WCE E;  3CC4 E;  1M1K G;  3DLL E;  1YI2 E;  2CQL A;  3CPW E;  1VQP E;  1KC8 G;  5JVH E;  1M90 G; 
#chains in the Genus database with same CATH topology
 3I55 E;  1RJL C;  4IO9 E;  1RL6 A;  3CME E;  3AUM O;  2HKD A;  3CKF A;  5HL7 E;  1N8R G;  4WF9 E;  3CC7 E;  1VQM E;  1OSP O;  3CC2 E;  2OYB O;  2OTL E;  2PI3 O;  1Q86 G;  5H1S I;  3CCL E;  2OTJ E;  1QVF E;  2ZJP E;  3CCQ E;  5GAE G;  3G71 E;  1KQS E;  1Q7Y G;  5GAG G;  1Q82 G;  2QA4 E;  1YIT E;  1K73 G;  3CMA E;  3OW2 E;  2ZJQ E;  1YJW E;  2OY5 O;  1VQ7 E;  1VQ9 E;  5MLC H;  1VQL E;  4U67 E;  3G4S E;  1Q81 G;  3CD6 E;  3CCE E;  3CCR E;  1YJ9 E;  5B11 O;  3PIP E;  2I5V O;  1JJ2 E;  3CXC E;  1QVG E;  3PIO E;  2OY1 O;  1YIJ E;  3IGE A;  5JVG E;  3CCS E;  5AN9 B;  1P4P A;  4UY8 G;  5B2A O;  1NJI G;  3I56 E;  3EC5 A;  1K8A G;  2FKG A;  5GAD G;  3CCJ E;  1FJ1 E;  3CKG A;  2OY8 A;  1VQK E;  2I5Z O;  2AF5 A;  1YJN E;  1YHQ E;  3CCM E;  1K9M G;  2FKJ A;  1VQ5 E;  4WFN E;  3CF5 E;  5DM7 E;  5DM6 E;  1W2B E;  3G6E E;  1VQ4 E;  4WFA E;  1KD1 G;  2OY7 A;  1S72 E;  2OL7 A;  3CCV E;  1VQO E;  5B10 O;  2OL8 O;  1VQN E;  4IOC E;  4IOA E;  2ZJR E;  1VQ8 E;  2OL6 O;  4WFB E;  3J7Z G;  5GAH G;  3CCU E;  1VQ6 E;  3IG9 A;  2QEX E;  4WCE E;  2G8C O;  3CC4 E;  1M1K G;  3DLL E;  1YI2 E;  2CQL A;  3CPW E;  1VQP E;  1KC8 G;  5B3M O;  5JVH E;  1M90 G; 
#chains in the Genus database with same CATH homology
 3I55 E;  4IO9 E;  1RL6 A;  3CME E;  5HL7 E;  1N8R G;  4WF9 E;  3CC7 E;  1VQM E;  3CC2 E;  2OTL E;  1Q86 G;  5H1S I;  3CCL E;  2OTJ E;  1QVF E;  2ZJP E;  3CCQ E;  5GAE G;  3G71 E;  1KQS E;  1Q7Y G;  5GAG G;  1Q82 G;  2QA4 E;  1YIT E;  1K73 G;  3CMA E;  3OW2 E;  2ZJQ E;  1YJW E;  1VQ7 E;  1VQ9 E;  5MLC H;  1VQL E;  4U67 E;  3G4S E;  1Q81 G;  3CD6 E;  3CCE E;  3CCR E;  1YJ9 E;  3PIP E;  1JJ2 E;  3CXC E;  1QVG E;  3PIO E;  1YIJ E;  5JVG E;  3CCS E;  5AN9 B;  4UY8 G;  1NJI G;  3I56 E;  1K8A G;  5GAD G;  3CCJ E;  1VQK E;  1YJN E;  1YHQ E;  3CCM E;  1K9M G;  1VQ5 E;  4WFN E;  3CF5 E;  5DM7 E;  5DM6 E;  1W2B E;  3G6E E;  1VQ4 E;  4WFA E;  1KD1 G;  1S72 E;  3CCV E;  1VQO E;  1VQN E;  4IOC E;  4IOA E;  2ZJR E;  1VQ8 E;  4WFB E;  3J7Z G;  5GAH G;  3CCU E;  1VQ6 E;  2QEX E;  4WCE E;  3CC4 E;  1M1K G;  3DLL E;  1YI2 E;  2CQL A;  3CPW E;  1VQP E;  1KC8 G;  5JVH E;  1M90 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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