4UY8M

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
136
structure length
136
Chain Sequence
MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
total genus 24
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4uy8M01
2PA2A 2OTJH 1K8AJ 5GAGN 2QA4H 1VQLH 4WFNJ 1W2BH 3CCQH 1N8RJ 1VQKH 1Q82J 3CC4H 1KD1J 3CC7H 4IOCJ 2ZJQJ 1Q7YJ 5JVHJ 3CCMH 1VQOH 5AN9F 3J7ZM 1YJWH 1VQ4H 4WF9J 3CMEH 3G71H 4WFBJ 3CCLH 1Y69K 5H1SO 3CCJH 1KQSH 5DM7J 3I56H 1YJ9H 1YIJH 3CMAH 3CCVH 1WKIA 1K73J 1S72H 3DLLJ 1YITH 3CCSH 1QVGH 1M90J 3G6EH 1M1KJ 1VQPH 2ZJPJ 1Q86J 4WCEJ 3CXCH 3CCRH 1VQ7H 1JJ2H 3CC2H 1VQ8H 4UY8M 4U67J 3I55H 3OW2H 5DM6J 3PIOJ 3PIPJ 5GAEN 1Q81J 4IO9J 4IOAJ 1VQ6H 1VQMH 2OTLH 1YHQH 1QVFH 1KC8J 1YJNH 3CF5J 5GADN 3CPWH 3G4SH 1YI2H 3CD6H 5HL7J 5GAHN 5JVGJ 3CCEH 1VQNH 1VQ5H 1NJIJ 1VQ9H 5MLCO 2ZJRJ 3CCUH 2QEXH 1K9MJ 4WFAJ
chains in the Genus database with same CATH superfamily
2PA2A 5AYYA 2OTJH 1K8AJ 5GAGN 3C2VA 2QA4H 1VQLH 4C7YA 1N60B 4WFNJ 1W2BH 1RM6A 2WK5A 3C2RA 4X46A 1WYGA 3CCQH 3WO0A 1N8RJ 1VQKH 3H5QA 1FIQC 1Q82J 3NS1C 3ETRC 3CC4H 1QPNA 1KD1J 3CC7H 4IOCJ 2W3RB 3NVWC 1AZYA 2W55B 3PAJA 4GA4A 2ZJQJ 5JVHJ 1Q7YJ 3EUB4 3CCMH 4GA6A 1VQOH 2DSJA 5AN9F 3J7ZM 2I1OA 1YJWH 1VQ4H 2W54B 4C80A 4WF9J 3CMEH 3G71H 1SB3A 4WFBJ 3CCLH 1Y69K 5H1SO 4US8A 3CCJH 1JRPB 1KQSH 4EAFA 1ZXIB 1N5WB 2E3TA 5DM7J 2J0FA 3SR6C 3I56H 1YJ9H 1YIJH 1NVJA 1V97A 3CMAH 1FMAE 4I9AA 3CCVH 4LHMA 2I14A 4US9A 1YTDA 2B7QA 3FAHA 1WKIA 1K73J 1O4UA 3C2FA 1S72H 1FFVB 3C2OA 5EP8A 1DGJA 3DLLJ 4USAA 1YITH 3CCSH 3B9JC 4KWVA 1QVGH 3AM9A 1M90J 1N63B 5EY3A 2Q5WE 3G6EH 1SIJA 1QPRA 1NVIE 4YYYA 1M1KJ 1VQPH 2ZJPJ 1Q86J 1QPOA 4WCEJ 3FC4A 5HULA 3CXCH 4KWWA 3CCRH 3L0GA 4ZOHA 5HUOA 1JJ2H 1VQ7H 2WP4A 1UOUA 1VLBA 3CC2H 1FO4A 1FM0E 1FFUB 1VQ8H 4UY8M 2QIEA 1QAPA 3NVZC 1OTPA 2OMDA 4U67J 3I55H 3OW2H 5DM6J 2TPTA 4C7ZA 5HUPA 4XR5A 3PIOJ 4YEKA 3PIPJ 3TQVA 5GAEN 3L4PA 1Q81J 4IO9J 2W3SB 4IOAJ 1VQ6H 3NVYC 1VQMH 2OTLH 4GA5A 4EADA 3RPFA 1YHQH 1N5XA 2WK6A 3AMZA 3NRZC 3C2EA 1YJNH 3VMMA 3CF5J 5GADN 1KC8J 1QVFH 1N62B 3WNZA 5AYZA 3BIIE 1X1OA 3CPWH 3GNNA 3G4SH 2JBMA 1YI2H 3CD6H 1QPQA 3WO1A 3AN1A 5HL7J 5GAHN 2B7NA 5JVGJ 2B7PA 3CCEH 1VQNH 5AYXA 1VDVA 1VQ5H 1NJIJ 1VQ9H 5MLCO 2ZJRJ 3CCUH 4AP8A 3NVVC 2QEXH 1JROB 1YTEA 1N61B 1BRWA 1K9MJ 4WFAJ 5MPOC 1YTKA
chains in the Genus database with same CATH topology
2PA2A 2OTJH 1K8AJ 5GAGN 2QA4H 1VQLH 4WFNJ 1W2BH 3CCQH 1N8RJ 1VQKH 1Q82J 3CC4H 1KD1J 3CC7H 4IOCJ 2ZJQJ 1Q7YJ 5JVHJ 3CCMH 1VQOH 5AN9F 3J7ZM 1YJWH 1VQ4H 4WF9J 3CMEH 3G71H 4WFBJ 3CCLH 1Y69K 5H1SO 3CCJH 1KQSH 5DM7J 3I56H 1YJ9H 1YIJH 3CMAH 3CCVH 1WKIA 1K73J 1S72H 3DLLJ 1YITH 3CCSH 1QVGH 1M90J 3G6EH 1M1KJ 1VQPH 2ZJPJ 1Q86J 4WCEJ 3CXCH 3CCRH 1VQ7H 1JJ2H 3CC2H 1VQ8H 4UY8M 4U67J 3I55H 3OW2H 5DM6J 3PIOJ 3PIPJ 5GAEN 1Q81J 4IO9J 4IOAJ 1VQ6H 1VQMH 2OTLH 1YHQH 1QVFH 1KC8J 1YJNH 3CF5J 5GADN 3CPWH 3G4SH 1YI2H 3CD6H 5HL7J 5GAHN 5JVGJ 3CCEH 1VQNH 1VQ5H 1NJIJ 1VQ9H 5MLCO 2ZJRJ 3CCUH 2QEXH 1K9MJ 4WFAJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PA2 A;  2OTJ H;  1K8A J;  5GAG N;  2QA4 H;  1VQL H;  4WFN J;  1W2B H;  3CCQ H;  1N8R J;  1VQK H;  1Q82 J;  3CC4 H;  1KD1 J;  3CC7 H;  4IOC J;  2ZJQ J;  1Q7Y J;  5JVH J;  3CCM H;  1VQO H;  5AN9 F;  3J7Z M;  1YJW H;  1VQ4 H;  4WF9 J;  3CME H;  3G71 H;  4WFB J;  3CCL H;  1Y69 K;  5H1S O;  3CCJ H;  1KQS H;  5DM7 J;  3I56 H;  1YJ9 H;  1YIJ H;  3CMA H;  3CCV H;  1WKI A;  1K73 J;  1S72 H;  3DLL J;  1YIT H;  3CCS H;  1QVG H;  1M90 J;  3G6E H;  1M1K J;  1VQP H;  2ZJP J;  1Q86 J;  4WCE J;  3CXC H;  3CCR H;  1VQ7 H;  1JJ2 H;  3CC2 H;  1VQ8 H;  4UY8 M;  4U67 J;  3I55 H;  3OW2 H;  5DM6 J;  3PIO J;  3PIP J;  5GAE N;  1Q81 J;  4IO9 J;  4IOA J;  1VQ6 H;  1VQM H;  2OTL H;  1YHQ H;  1QVF H;  1KC8 J;  1YJN H;  3CF5 J;  5GAD N;  3CPW H;  3G4S H;  1YI2 H;  3CD6 H;  5HL7 J;  5GAH N;  5JVG J;  3CCE H;  1VQN H;  1VQ5 H;  1NJI J;  1VQ9 H;  5MLC O;  2ZJR J;  3CCU H;  2QEX H;  1K9M J;  4WFA J; 
#chains in the Genus database with same CATH topology
 2PA2 A;  5AYY A;  2OTJ H;  1K8A J;  5GAG N;  3C2V A;  2QA4 H;  1VQL H;  4C7Y A;  1N60 B;  4WFN J;  1W2B H;  1RM6 A;  2WK5 A;  3C2R A;  4X46 A;  1WYG A;  3CCQ H;  3WO0 A;  1N8R J;  1VQK H;  3H5Q A;  1FIQ C;  1Q82 J;  3NS1 C;  3ETR C;  3CC4 H;  1QPN A;  1KD1 J;  3CC7 H;  4IOC J;  2W3R B;  3NVW C;  1AZY A;  2W55 B;  3PAJ A;  4GA4 A;  2ZJQ J;  5JVH J;  1Q7Y J;  3EUB 4;  3CCM H;  4GA6 A;  1VQO H;  2DSJ A;  5AN9 F;  3J7Z M;  2I1O A;  1YJW H;  1VQ4 H;  2W54 B;  4C80 A;  4WF9 J;  3CME H;  3G71 H;  1SB3 A;  4WFB J;  3CCL H;  1Y69 K;  5H1S O;  4US8 A;  3CCJ H;  1JRP B;  1KQS H;  4EAF A;  1ZXI B;  1N5W B;  2E3T A;  5DM7 J;  2J0F A;  3SR6 C;  3I56 H;  1YJ9 H;  1YIJ H;  1NVJ A;  1V97 A;  3CMA H;  1FMA E;  4I9A A;  3CCV H;  4LHM A;  2I14 A;  4US9 A;  1YTD A;  2B7Q A;  3FAH A;  1WKI A;  1K73 J;  1O4U A;  3C2F A;  1S72 H;  1FFV B;  3C2O A;  5EP8 A;  1DGJ A;  3DLL J;  4USA A;  1YIT H;  3CCS H;  3B9J C;  4KWV A;  1QVG H;  3AM9 A;  1M90 J;  1N63 B;  5EY3 A;  2Q5W E;  3G6E H;  1SIJ A;  1QPR A;  1NVI E;  4YYY A;  1M1K J;  1VQP H;  2ZJP J;  1Q86 J;  1QPO A;  4WCE J;  3FC4 A;  5HUL A;  3CXC H;  4KWW A;  3CCR H;  3L0G A;  4ZOH A;  5HUO A;  1JJ2 H;  1VQ7 H;  2WP4 A;  1UOU A;  1VLB A;  3CC2 H;  1FO4 A;  1FM0 E;  1FFU B;  1VQ8 H;  4UY8 M;  2QIE A;  1QAP A;  3NVZ C;  1OTP A;  2OMD A;  4U67 J;  3I55 H;  3OW2 H;  5DM6 J;  2TPT A;  4C7Z A;  5HUP A;  4XR5 A;  3PIO J;  4YEK A;  3PIP J;  3TQV A;  5GAE N;  3L4P A;  1Q81 J;  4IO9 J;  2W3S B;  4IOA J;  1VQ6 H;  3NVY C;  1VQM H;  2OTL H;  4GA5 A;  4EAD A;  3RPF A;  1YHQ H;  1N5X A;  2WK6 A;  3AMZ A;  3NRZ C;  3C2E A;  1YJN H;  3VMM A;  3CF5 J;  5GAD N;  1KC8 J;  1QVF H;  1N62 B;  3WNZ A;  5AYZ A;  3BII E;  1X1O A;  3CPW H;  3GNN A;  3G4S H;  2JBM A;  1YI2 H;  3CD6 H;  1QPQ A;  3WO1 A;  3AN1 A;  5HL7 J;  5GAH N;  2B7N A;  5JVG J;  2B7P A;  3CCE H;  1VQN H;  5AYX A;  1VDV A;  1VQ5 H;  1NJI J;  1VQ9 H;  5MLC O;  2ZJR J;  3CCU H;  4AP8 A;  3NVV C;  2QEX H;  1JRO B;  1YTE A;  1N61 B;  1BRW A;  1K9M J;  4WFA J;  5MPO C;  1YTK A; 
#chains in the Genus database with same CATH homology
 2PA2 A;  2OTJ H;  1K8A J;  5GAG N;  2QA4 H;  1VQL H;  4WFN J;  1W2B H;  3CCQ H;  1N8R J;  1VQK H;  1Q82 J;  3CC4 H;  1KD1 J;  3CC7 H;  4IOC J;  2ZJQ J;  1Q7Y J;  5JVH J;  3CCM H;  1VQO H;  5AN9 F;  3J7Z M;  1YJW H;  1VQ4 H;  4WF9 J;  3CME H;  3G71 H;  4WFB J;  3CCL H;  1Y69 K;  5H1S O;  3CCJ H;  1KQS H;  5DM7 J;  3I56 H;  1YJ9 H;  1YIJ H;  3CMA H;  3CCV H;  1WKI A;  1K73 J;  1S72 H;  3DLL J;  1YIT H;  3CCS H;  1QVG H;  1M90 J;  3G6E H;  1M1K J;  1VQP H;  2ZJP J;  1Q86 J;  4WCE J;  3CXC H;  3CCR H;  1VQ7 H;  1JJ2 H;  3CC2 H;  1VQ8 H;  4UY8 M;  4U67 J;  3I55 H;  3OW2 H;  5DM6 J;  3PIO J;  3PIP J;  5GAE N;  1Q81 J;  4IO9 J;  4IOA J;  1VQ6 H;  1VQM H;  2OTL H;  1YHQ H;  1QVF H;  1KC8 J;  1YJN H;  3CF5 J;  5GAD N;  3CPW H;  3G4S H;  1YI2 H;  3CD6 H;  5HL7 J;  5GAH N;  5JVG J;  3CCE H;  1VQN H;  1VQ5 H;  1NJI J;  1VQ9 H;  5MLC O;  2ZJR J;  3CCU H;  2QEX H;  1K9M J;  4WFA J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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