4UY8Z

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
58
structure length
58
Chain Sequence
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
total genus 15
structure length 58
sequence length 58
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Z PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 4uy8Z00
4WFNW 1VQ8W 2QEXW 5HL7W 5GAGa 3CXCV 1VQ7W 3G4SW 1QVFV 2ZJRW 3CCVW 1VQ4W 1W2BV 4IOAW 4WFAW 1VQNW 3CCMW 1Q7YX 5JVHW 1YI2W 3CMAW 5GADa 3J7ZZ 1VQLW 5GAHa 1VQ5W 3CCSW 4WF9W 3CCQW 4IOCW 1M1KX 1VQOW 1VQMW 1KQSV 4WCEW 1VQ6W 1M90X 3I56W 1VQPW 1K9MX 1VQ9W 1S72W 1Q86X 1K73X 3PIOW 4WFBW 1YJWW 1KD1X 3G71W 1Q81X 5DM7W 3CMEW 5DM6W 3CC2W 2ZJPW 1NJIX 3PIPW 1VQKW 3CC4W 3G6EW 3OW2V 3CC7W 4IO9W 3CCRW 3CCEW 3CD6W 3CCUW 3CPWV 1YHQW 1Q82X 1JJ2V 2ZJQW 1YITW 1K8AX 1YJ9W 1YJNW 3DLLW 1KC8X 5JVGW 1YIJW 4UY8Z 3CF5W 1N8RX 3CCJW 2QA4W 3I55W 4U67W 2OTJW 1QVGV 1BXYA 5GAEa 3CCLW 2OTLW
chains in the Genus database with same CATH superfamily
4WFNW 1VQ8W 1CTFA 3O2HA 3G1BA 4BL3A 3G3PA 2QEXW 1MWRA 1R6OC 5HL7W 5GAGa 3CXCV 1RQSA 1VQ7W 3G4SW 1MWSA 3O1FA 1QVFV 2ZJRW 5CA3A 1RQUA 3CCVW 1VQ4W 3O2BA 1W2BV 4IOAW 4WFAW 1VQNW 3CCMW 1Q7YX 1R6QC 5JVHW 4CPKA 1YI2W 3CMAW 3ZG5A 5GADa 1RQVA 3J7ZZ 1VQLW 5GAHa 4YJXA 4DKIA 1VQ5W 3CCSW 1DD3A 4WF9W 3ZG0A 3CCQW 3D3IA 3W7WA 3GQ1A 3W7UA 4IOCW 1M1KX 1VQOW 1MG9A 1VQMW 1KQSV 4WCEW 1VQ6W 4CJNA 1M90X 3I56W 1VQPW 1K9MX 1LZWA 3ZFZA 1VQ9W 4YKAA 1S72W 1Q86X 2WA9A 1MBUC 3O2OA 1K73X 3PIOW 4WFBW 5M1AA 3GQ0A 1YJWW 1KD1X 3G71W 1Q81X 5DM7W 2W9RA 4YJMA 3CMEW 3GW1A 3DNJA 5DM6W 3CC2W 1DD4A 5M19A 2ZJPW 5GW7A 3G19A 1NJIX 3PIPW 1MBVB 1VQKW 3W7XA 3CC4W 1MWUA 3G6EW 3OW2V 3CC7W 4IO9W 3O1FB 3CCRW 3CCEW 3CD6W 3W7SA 3CCUW 3W7TA 3CPWV 1YHQW 1Q82X 1JJ2V 2ZJQW 1YITW 4BL2A 1K8AX 1YJ9W 2WA8A 1YJNW 1MWTA 3DLLW 5M18A 1KC8X 5JVGW 1YIJW 1VQQA 4UY8Z 3CF5W 1N8RX 3CCJW 2QA4W 3I55W 4U67W 1MBXC 1QVGV 2OTJW 1BXYA 5GAEa 3CCLW 2OTLW
chains in the Genus database with same CATH topology
4WFNW 1VQ8W 2QEXW 5HL7W 5GAGa 3CXCV 1VQ7W 3G4SW 1QVFV 2ZJRW 3CCVW 1VQ4W 1W2BV 4IOAW 4WFAW 1VQNW 3CCMW 1Q7YX 5JVHW 1YI2W 3CMAW 5GADa 3J7ZZ 1VQLW 5GAHa 1VQ5W 3CCSW 4WF9W 3CCQW 4IOCW 1M1KX 1VQOW 1VQMW 1KQSV 4WCEW 1VQ6W 1M90X 3I56W 1VQPW 1K9MX 1VQ9W 1S72W 1Q86X 1K73X 3PIOW 4WFBW 1YJWW 1KD1X 3G71W 1Q81X 5DM7W 3CMEW 5DM6W 3CC2W 2ZJPW 1NJIX 3PIPW 1VQKW 3CC4W 3G6EW 3OW2V 3CC7W 4IO9W 3CCRW 3CCEW 3CD6W 3CCUW 3CPWV 1YHQW 1Q82X 1JJ2V 2ZJQW 1YITW 1K8AX 1YJ9W 1YJNW 3DLLW 1KC8X 5JVGW 1YIJW 4UY8Z 3CF5W 1N8RX 3CCJW 2QA4W 3I55W 4U67W 2OTJW 1QVGV 1BXYA 5GAEa 3CCLW 2OTLW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFN W;  1VQ8 W;  2QEX W;  5HL7 W;  5GAG a;  3CXC V;  1VQ7 W;  3G4S W;  1QVF V;  2ZJR W;  3CCV W;  1VQ4 W;  1W2B V;  4IOA W;  4WFA W;  1VQN W;  3CCM W;  1Q7Y X;  5JVH W;  1YI2 W;  3CMA W;  5GAD a;  3J7Z Z;  1VQL W;  5GAH a;  1VQ5 W;  3CCS W;  4WF9 W;  3CCQ W;  4IOC W;  1M1K X;  1VQO W;  1VQM W;  1KQS V;  4WCE W;  1VQ6 W;  1M90 X;  3I56 W;  1VQP W;  1K9M X;  1VQ9 W;  1S72 W;  1Q86 X;  1K73 X;  3PIO W;  4WFB W;  1YJW W;  1KD1 X;  3G71 W;  1Q81 X;  5DM7 W;  3CME W;  5DM6 W;  3CC2 W;  2ZJP W;  1NJI X;  3PIP W;  1VQK W;  3CC4 W;  3G6E W;  3OW2 V;  3CC7 W;  4IO9 W;  3CCR W;  3CCE W;  3CD6 W;  3CCU W;  3CPW V;  1YHQ W;  1Q82 X;  1JJ2 V;  2ZJQ W;  1YIT W;  1K8A X;  1YJ9 W;  1YJN W;  3DLL W;  1KC8 X;  5JVG W;  1YIJ W;  4UY8 Z;  3CF5 W;  1N8R X;  3CCJ W;  2QA4 W;  3I55 W;  4U67 W;  2OTJ W;  1QVG V;  1BXY A;  5GAE a;  3CCL W;  2OTL W; 
#chains in the Genus database with same CATH topology
 4WFN W;  1VQ8 W;  1CTF A;  3O2H A;  3G1B A;  4BL3 A;  3G3P A;  2QEX W;  1MWR A;  1R6O C;  5HL7 W;  5GAG a;  3CXC V;  1RQS A;  1VQ7 W;  3G4S W;  1MWS A;  3O1F A;  1QVF V;  2ZJR W;  5CA3 A;  1RQU A;  3CCV W;  1VQ4 W;  3O2B A;  1W2B V;  4IOA W;  4WFA W;  1VQN W;  3CCM W;  1Q7Y X;  1R6Q C;  5JVH W;  4CPK A;  1YI2 W;  3CMA W;  3ZG5 A;  5GAD a;  1RQV A;  3J7Z Z;  1VQL W;  5GAH a;  4YJX A;  4DKI A;  1VQ5 W;  3CCS W;  1DD3 A;  4WF9 W;  3ZG0 A;  3CCQ W;  3D3I A;  3W7W A;  3GQ1 A;  3W7U A;  4IOC W;  1M1K X;  1VQO W;  1MG9 A;  1VQM W;  1KQS V;  4WCE W;  1VQ6 W;  4CJN A;  1M90 X;  3I56 W;  1VQP W;  1K9M X;  1LZW A;  3ZFZ A;  1VQ9 W;  4YKA A;  1S72 W;  1Q86 X;  2WA9 A;  1MBU C;  3O2O A;  1K73 X;  3PIO W;  4WFB W;  5M1A A;  3GQ0 A;  1YJW W;  1KD1 X;  3G71 W;  1Q81 X;  5DM7 W;  2W9R A;  4YJM A;  3CME W;  3GW1 A;  3DNJ A;  5DM6 W;  3CC2 W;  1DD4 A;  5M19 A;  2ZJP W;  5GW7 A;  3G19 A;  1NJI X;  3PIP W;  1MBV B;  1VQK W;  3W7X A;  3CC4 W;  1MWU A;  3G6E W;  3OW2 V;  3CC7 W;  4IO9 W;  3O1F B;  3CCR W;  3CCE W;  3CD6 W;  3W7S A;  3CCU W;  3W7T A;  3CPW V;  1YHQ W;  1Q82 X;  1JJ2 V;  2ZJQ W;  1YIT W;  4BL2 A;  1K8A X;  1YJ9 W;  2WA8 A;  1YJN W;  1MWT A;  3DLL W;  5M18 A;  1KC8 X;  5JVG W;  1YIJ W;  1VQQ A;  4UY8 Z;  3CF5 W;  1N8R X;  3CCJ W;  2QA4 W;  3I55 W;  4U67 W;  1MBX C;  1QVG V;  2OTJ W;  1BXY A;  5GAE a;  3CCL W;  2OTL W; 
#chains in the Genus database with same CATH homology
 4WFN W;  1VQ8 W;  2QEX W;  5HL7 W;  5GAG a;  3CXC V;  1VQ7 W;  3G4S W;  1QVF V;  2ZJR W;  3CCV W;  1VQ4 W;  1W2B V;  4IOA W;  4WFA W;  1VQN W;  3CCM W;  1Q7Y X;  5JVH W;  1YI2 W;  3CMA W;  5GAD a;  3J7Z Z;  1VQL W;  5GAH a;  1VQ5 W;  3CCS W;  4WF9 W;  3CCQ W;  4IOC W;  1M1K X;  1VQO W;  1VQM W;  1KQS V;  4WCE W;  1VQ6 W;  1M90 X;  3I56 W;  1VQP W;  1K9M X;  1VQ9 W;  1S72 W;  1Q86 X;  1K73 X;  3PIO W;  4WFB W;  1YJW W;  1KD1 X;  3G71 W;  1Q81 X;  5DM7 W;  3CME W;  5DM6 W;  3CC2 W;  2ZJP W;  1NJI X;  3PIP W;  1VQK W;  3CC4 W;  3G6E W;  3OW2 V;  3CC7 W;  4IO9 W;  3CCR W;  3CCE W;  3CD6 W;  3CCU W;  3CPW V;  1YHQ W;  1Q82 X;  1JJ2 V;  2ZJQ W;  1YIT W;  1K8A X;  1YJ9 W;  1YJN W;  3DLL W;  1KC8 X;  5JVG W;  1YIJ W;  4UY8 Z;  3CF5 W;  1N8R X;  3CCJ W;  2QA4 W;  3I55 W;  4U67 W;  2OTJ W;  1QVG V;  1BXY A;  5GAE a;  3CCL W;  2OTL W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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