4UYQB

High resolution structure of the third cohesin scac in complex with the scab dockerin with a mutation in the c-terminal helix (in to si) from acetivibrio cellulolyticus displaying a type i interaction.
Total Genus 17
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
73
structure length
73
Chain Sequence
KFIYGDVDGNGSVRINDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKSIDAVLVRDYVLGKIFLFPVEEK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cell adhesion/protein binding
molecule keywords Cellulosomal scaffoldin anchoring protein C
publication title Cell-surface Attachment of Bacterial Multienzyme Complexes Involves Highly Dynamic Protein-Protein Anchors.
pubmed doi rcsb
source organism Acetivibrio cellulolyticus
total genus 17
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2014-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00404 Dockerin_1 Dockerin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 4uyqB00
2B59B 1DAVA 4DH2B 4WKZA 5LXVB 4WI0B 1OHZB 4U3SB 4UYQB 2CCLB 4UYPB 4IU3B 2OZNB 1DAQA 4IU2B 2MTEA 5G5DB 2Y3NB 2JNKA 4FL4C 3KCPA 2VN6B 4FL4A 3UL4B 2VN5B 5K39B
chains in the Genus database with same CATH superfamily
2B59B 1DAVA 4DH2B 4WKZA 5LXVB 4WI0B 1OHZB 4U3SB 4UYQB 2CCLB 4UYPB 4IU3B 2OZNB 1DAQA 4IU2B 2MTEA 5G5DB 2Y3NB 2JNKA 4FL4C 3KCPA 2VN6B 4FL4A 3UL4B 2VN5B 5K39B
chains in the Genus database with same CATH topology
2B59B 1DAVA 4DH2B 4WKZA 5LXVB 4WI0B 1OHZB 4U3SB 4UYQB 2CCLB 4UYPB 4IU3B 2OZNB 1DAQA 4IU2B 2MTEA 5G5DB 2Y3NB 2JNKA 4FL4C 3KCPA 2VN6B 4FL4A 3UL4B 2VN5B 5K39B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B59 B;  1DAV A;  4DH2 B;  4WKZ A;  5LXV B;  4WI0 B;  1OHZ B;  4U3S B;  4UYQ B;  2CCL B;  4UYP B;  4IU3 B;  2OZN B;  1DAQ A;  4IU2 B;  2MTE A;  5G5D B;  2Y3N B;  2JNK A;  4FL4 C;  3KCP A;  2VN6 B;  4FL4 A;  3UL4 B;  2VN5 B;  5K39 B; 
#chains in the Genus database with same CATH topology
 2B59 B;  1DAV A;  4DH2 B;  4WKZ A;  5LXV B;  4WI0 B;  1OHZ B;  4U3S B;  4UYQ B;  2CCL B;  4UYP B;  4IU3 B;  2OZN B;  1DAQ A;  4IU2 B;  2MTE A;  5G5D B;  2Y3N B;  2JNK A;  4FL4 C;  3KCP A;  2VN6 B;  4FL4 A;  3UL4 B;  2VN5 B;  5K39 B; 
#chains in the Genus database with same CATH homology
 2B59 B;  1DAV A;  4DH2 B;  4WKZ A;  5LXV B;  4WI0 B;  1OHZ B;  4U3S B;  4UYQ B;  2CCL B;  4UYP B;  4IU3 B;  2OZN B;  1DAQ A;  4IU2 B;  2MTE A;  5G5D B;  2Y3N B;  2JNK A;  4FL4 C;  3KCP A;  2VN6 B;  4FL4 A;  3UL4 B;  2VN5 B;  5K39 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...