4UZWA

High-resolution nmr structures of the domains of saccharomyces cerevisiae tho1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
50
structure length
50
Chain Sequence
SADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords PROTEIN THO1
publication title High-Resolution NMR Structures of the Domains of Saccharomyces Cerevisiae Tho1.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 12
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2014-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 4uzwA00
2JVWA 2WQGA 2RNOA 2RNNA 2KVUA 4UZWA 2KVEA 1V66A 2KVDA 1JEQA 1JJRA 2KW9A 1H1JS 1ZBHA 4BITA
chains in the Genus database with same CATH superfamily
1EN7A 2RNOA 3L0OA 2RNNA 2QNFA 1A63A 1E7DA 3LLRA 4UZWA 1JJRA 1H9EA 1JEIA 1ZS9A 1GJJA 3FLGA 2WQGA 1V66A 3QKJA 1JEQA 1GKUB 2KW9A 2W51A 1ZBHA 1Y02A 2JVWA 2KFVA 1A62A 1GL9B 2KVEA 2KVDA 2LC3A 2HJQA 1H1JS 1E7LA 2ODCI 4BITA 2LD7A 1YNSA 2DK4A 2QNCA 2KVUA 1A8VA 2ODGC 2A8VA 2MPHA 1KHCA 2G80A 5CIUA 1H9FA
chains in the Genus database with same CATH topology
2JVWA 2WQGA 2RNOA 2RNNA 2KVUA 4UZWA 2KVEA 1V66A 2KVDA 1JEQA 1JJRA 2KW9A 1H1JS 1ZBHA 4BITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JVW A;  2WQG A;  2RNO A;  2RNN A;  2KVU A;  4UZW A;  2KVE A;  1V66 A;  2KVD A;  1JEQ A;  1JJR A;  2KW9 A;  1H1J S;  1ZBH A;  4BIT A; 
#chains in the Genus database with same CATH topology
 1EN7 A;  2RNO A;  3L0O A;  2RNN A;  2QNF A;  1A63 A;  1E7D A;  3LLR A;  4UZW A;  1JJR A;  1H9E A;  1JEI A;  1ZS9 A;  1GJJ A;  3FLG A;  2WQG A;  1V66 A;  3QKJ A;  1JEQ A;  1GKU B;  2KW9 A;  2W51 A;  1ZBH A;  1Y02 A;  2JVW A;  2KFV A;  1A62 A;  1GL9 B;  2KVE A;  2KVD A;  2LC3 A;  2HJQ A;  1H1J S;  1E7L A;  2ODC I;  4BIT A;  2LD7 A;  1YNS A;  2DK4 A;  2QNC A;  2KVU A;  1A8V A;  2ODG C;  2A8V A;  2MPH A;  1KHC A;  2G80 A;  5CIU A;  1H9F A; 
#chains in the Genus database with same CATH homology
 2JVW A;  2WQG A;  2RNO A;  2RNN A;  2KVU A;  4UZW A;  2KVE A;  1V66 A;  2KVD A;  1JEQ A;  1JJR A;  2KW9 A;  1H1J S;  1ZBH A;  4BIT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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