4UZWA

High-resolution nmr structures of the domains of saccharomyces cerevisiae tho1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
50
structure length
50
Chain Sequence
SADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High-Resolution NMR Structures of the Domains of Saccharomyces Cerevisiae Tho1.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Saccharomyces cerevisiae
molecule keywords PROTEIN THO1
total genus 12
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2014-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 4uzwA00
1JJRA 2KVEA 2WQGA 1H1JS 2RNNA 4UZWA 1ZBHA 2KVDA 2KVUA 2JVWA 2RNOA 1V66A 4BITA 1JEQA 2KW9A
chains in the Genus database with same CATH superfamily
2KFVA 2A8VA 1H1JS 1GL9B 2RNNA 1GKUB 1EN7A 2ODCI 1ZBHA 1GJJA 2RNOA 3L0OA 1V66A 2LC3A 1A62A 1YNSA 1E7LA 1A8VA 1H9FA 2W51A 1JEIA 1JJRA 3LLRA 1A63A 2KVEA 2QNCA 1Y02A 2HJQA 5CIUA 2KVDA 2MPHA 3FLGA 1KHCA 2LD7A 2ODGC 2DK4A 2WQGA 2G80A 1ZS9A 1E7DA 4UZWA 2QNFA 1H9EA 2KVUA 2JVWA 3QKJA 4BITA 1JEQA 2KW9A
chains in the Genus database with same CATH topology
1JJRA 2KVEA 2WQGA 1H1JS 2RNNA 4UZWA 1ZBHA 2KVDA 2KVUA 2JVWA 2RNOA 1V66A 4BITA 1JEQA 2KW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JJR A;  2KVE A;  2WQG A;  1H1J S;  2RNN A;  4UZW A;  1ZBH A;  2KVD A;  2KVU A;  2JVW A;  2RNO A;  1V66 A;  4BIT A;  1JEQ A;  2KW9 A; 
#chains in the Genus database with same CATH topology
 2KFV A;  2A8V A;  1H1J S;  1GL9 B;  2RNN A;  1GKU B;  1EN7 A;  2ODC I;  1ZBH A;  1GJJ A;  2RNO A;  3L0O A;  1V66 A;  2LC3 A;  1A62 A;  1YNS A;  1E7L A;  1A8V A;  1H9F A;  2W51 A;  1JEI A;  1JJR A;  3LLR A;  1A63 A;  2KVE A;  2QNC A;  1Y02 A;  2HJQ A;  5CIU A;  2KVD A;  2MPH A;  3FLG A;  1KHC A;  2LD7 A;  2ODG C;  2DK4 A;  2WQG A;  2G80 A;  1ZS9 A;  1E7D A;  4UZW A;  2QNF A;  1H9E A;  2KVU A;  2JVW A;  3QKJ A;  4BIT A;  1JEQ A;  2KW9 A; 
#chains in the Genus database with same CATH homology
 1JJR A;  2KVE A;  2WQG A;  1H1J S;  2RNN A;  4UZW A;  1ZBH A;  2KVD A;  2KVU A;  2JVW A;  2RNO A;  1V66 A;  4BIT A;  1JEQ A;  2KW9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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