4UZWA

High-resolution nmr structures of the domains of saccharomyces cerevisiae tho1
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
50
structure length
50
Chain Sequence
SADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords PROTEIN THO1
publication title High-Resolution NMR Structures of the Domains of Saccharomyces Cerevisiae Tho1.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 12
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2014-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 4uzwA00
2WQGA 2KVUA 2KW9A 4UZWA 1JJRA 2RNNA 1V66A 2JVWA 1JEQA 1ZBHA 1H1JS 4BITA 2KVEA 2RNOA 2KVDA
chains in the Genus database with same CATH superfamily
1E7DA 1Y02A 1KHCA 3QKJA 2QNCA 2LC3A 2RNOA 2WQGA 2JVWA 1ZS9A 2MPHA 2DK4A 2ODGC 3FLGA 1H9EA 3L0OA 3LLRA 4BITA 2A8VA 2KVDA 1JJRA 2KVUA 4UZWA 1EN7A 2ODCI 1GJJA 5CIUA 2QNFA 2G80A 2KVEA 1A8VA 1GKUB 1YNSA 2KW9A 1H9FA 2RNNA 1V66A 2HJQA 1JEQA 1A63A 2W51A 1A62A 1GL9B 1ZBHA 1H1JS 1E7LA 2KFVA 1JEIA 2LD7A
chains in the Genus database with same CATH topology
2WQGA 2KVUA 2KW9A 4UZWA 1JJRA 2RNNA 1V66A 2JVWA 1JEQA 1ZBHA 1H1JS 4BITA 2KVEA 2RNOA 2KVDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WQG A;  2KVU A;  2KW9 A;  4UZW A;  1JJR A;  2RNN A;  1V66 A;  2JVW A;  1JEQ A;  1ZBH A;  1H1J S;  4BIT A;  2KVE A;  2RNO A;  2KVD A; 
#chains in the Genus database with same CATH topology
 1E7D A;  1Y02 A;  1KHC A;  3QKJ A;  2QNC A;  2LC3 A;  2RNO A;  2WQG A;  2JVW A;  1ZS9 A;  2MPH A;  2DK4 A;  2ODG C;  3FLG A;  1H9E A;  3L0O A;  3LLR A;  4BIT A;  2A8V A;  2KVD A;  1JJR A;  2KVU A;  4UZW A;  1EN7 A;  2ODC I;  1GJJ A;  5CIU A;  2QNF A;  2G80 A;  2KVE A;  1A8V A;  1GKU B;  1YNS A;  2KW9 A;  1H9F A;  2RNN A;  1V66 A;  2HJQ A;  1JEQ A;  1A63 A;  2W51 A;  1A62 A;  1GL9 B;  1ZBH A;  1H1J S;  1E7L A;  2KFV A;  1JEI A;  2LD7 A; 
#chains in the Genus database with same CATH homology
 2WQG A;  2KVU A;  2KW9 A;  4UZW A;  1JJR A;  2RNN A;  1V66 A;  2JVW A;  1JEQ A;  1ZBH A;  1H1J S;  4BIT A;  2KVE A;  2RNO A;  2KVD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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