4V2RA

Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
Total Genus 250
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
250
sequence length
666
structure length
612
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDELQESLIRCLLAGVFTDELPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHETDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PHENYLALANINE AMINOMUTASE (L-BETA-PHENYLALANINE FORMING)
publication title Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase.
pubmed doi rcsb
source organism Taxus wallichiana var. chinensis
total genus 250
structure length 612
sequence length 666
chains with identical sequence B
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2014-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4v2rA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4v2rA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4v2rA02
3OCFA 3GTDA 3OCEA 1VDKA 4FFXA 4C6GA 3GZHA 4APBA 4BABA 2PFMA 4C5UA 1C3CA 1DCNA 2PTQA 3KDZA 1Y2MA 5EYVA 4EFCA 1DOFA 1GKMA 2O7FA 1B8FA 1TJWA 1YFEA 3NZ4A 1YFMA 1TJVA 1YISA 4APAA 1T6PA 5F92A 4ADMA 2X75A 3C8TA 3E04A 4MX2A 1C3UA 1JSWA 4CQ5A 1GK3A 5HW2A 2RJSA 2NYFA 2PTSA 3RRPA 1TJUA 1Q5NA 2J91A 2PTRA 4NSLA 1KQ7A 1AUWA 2RJRA 5EYTA 2NYNA 4ADLA 2E9FA 1U16A 3UNVA 3RD8A 2QGAB 2HVGA 4EEIA 1XWOA 1U15A 5D6BA 3R6VA 1HY1A 3R6QA 4HGVA 3QBPA 1RE5A 2OHYA 3KDYA 2O78A 2VD6A 3R6YA 1T6JA 1EB4A 2FUSA 3TV2A 2O7DA 2O7EA 2O6YA 1FUOA 4FLCA 3BHGA 1K62A 1W27A 1GKJA 1HY0A 1FURA 2O7BA 5F91A 4BAAA 1GK2A 1FUQA 1FUPA 4C5RA 4C5SA 4V2QA 1J3UA 3CZOA 1I0AA 2QVEA 4V2RA 1K7WA 4NLEA 1TJ7A 3NO9A 2YIIA
chains in the Genus database with same CATH superfamily
3OCFA 3GTDA 3OCEA 1VDKA 1XMDA 4FFXA 1ZYRD 3LRDA 4C6GA 3GZHA 3LR8A 4APBA 4BABA 2HWGA 2FENA 2PFMA 2EZCA 2F5JA 4C5UA 1C3CA 2FIPA 1ZYMA 1DCNA 1TWGA 4CEHA 2PTQA 2K3QA 3CRVA 3CQZA 2N3EA 3KDZA 2CW0D 1XL7A 1Y2MA 1Y1WA 5EYVA 4EFCA 1WCMA 1DOFA 1HQMD 1GKMA 4A15A 2BE5D 3CZOA 2O7FA 1B8FA 1TJWA 1I6VD 1YFEA 3NZ4A 1YFMA 1TJVA 3GTPA 1YISA 4APAA 1T6PA 5F92A 4ADMA 2X75A 4CEIA 2E2HA 3C8TA 1TWHA 3U44A 2JA6A 4QIWA 5H8WA 2LPJA 1XL8A 2X0OA 2Y0NA 3E04A 4MX2A 1TWAA 2A68D 4FBSA 1C3UA 1JSWA 4CQ5A 1EZBA 1GK3A 2RJSA 5HW2A 2LKMB 2NYFA 2PTSA 3RRPA 2R7ZA 1TJUA 2VK9A 3GTQA 1Q5NA 2J91A 2PTRA 4NSLA 2MX8A 1KQ7A 1YNJD 2X0PA 3EZBA 1AUWA 2A6ED 2K3NA 2RJRA 2X0QA 2MX9A 2A6HD 3GTLA 5EYTA 2JA7A 2NYNA 3GTOA 2E9FA 4ADLA 2N1DB 3CRW1 1U16A 3UNVA 2R92A 3RD8A 2QGAB 5M0IA 2HVGA 2VL7A 5M0JA 4EEIA 1XWOA 1U15A 5D6BA 1SMYD 3GTJA 3GTMA 1HY1A 3R6QA 3R6VA 2EZBA 3EZEA 2LYIA 4HGVA 3EZAA 3QBPA 2NVYA 1RE5A 2LPIA 2OHYA 1R9TA 1TWCA 2LTHA 3KDYA 1K83A 2O78A 2VD6A 3R6YA 3LR2A 2FIOA 2A69D 1T6JA 1EB4A 2FUSA 1XMCA 2HROA 3TV2A 2O7DA 2NVXA 2O7EA 1IW7D 2EZAA 3FKIA 5IZ2A 2O6YA 1I50A 1YNND 2FELA 2R93A 1FUOA 4FLCA 4CEJA 3BHGA 2MP0A 1K62A 1W27A 2VUMA 1GKJA 1XLYA 4WNLA 3H0GA 1HY0A 1FURA 3U4QA 2O7BA 5F91A 1Y1VA 1SFOA 1I3QA 2VSFA 4BAAA 1GK2A 1FUQA 1FUPA 2MQAA 4C5RA 3GTKA 4C5SA 1EZAA 2K3OA 1TWFA 4V2QA 2YU9A 2E2IA 3GTGA 2B63A 1J3UA 1I0AA 2QVEA 4V2RA 4C2MA 2JA5A 3LR6A 2AQLA 1K7WA 4NLEA 1TJ7A 3NO9A 2O5JD 2YIIA
chains in the Genus database with same CATH topology
3OCFA 3GTDA 3OCEA 1VDKA 4FFXA 4C6GA 3GZHA 4APBA 4BABA 2PFMA 4C5UA 1C3CA 1DCNA 2PTQA 3KDZA 1Y2MA 5EYVA 4EFCA 1DOFA 1GKMA 2O7FA 1B8FA 1TJWA 1YFEA 3NZ4A 1YFMA 1TJVA 1YISA 4APAA 1T6PA 5F92A 4ADMA 2X75A 3C8TA 3E04A 4MX2A 1C3UA 1JSWA 4CQ5A 1GK3A 5HW2A 2RJSA 2NYFA 2PTSA 3RRPA 1TJUA 1Q5NA 2J91A 2PTRA 4NSLA 1KQ7A 1AUWA 2RJRA 5EYTA 2NYNA 4ADLA 2E9FA 1U16A 3UNVA 3RD8A 2QGAB 2HVGA 4EEIA 1XWOA 1U15A 5D6BA 3R6VA 1HY1A 3R6QA 4HGVA 3QBPA 1RE5A 2OHYA 3KDYA 2O78A 2VD6A 3R6YA 1T6JA 1EB4A 2FUSA 3TV2A 2O7DA 2O7EA 2O6YA 1FUOA 4FLCA 3BHGA 1K62A 1W27A 1GKJA 1HY0A 1FURA 2O7BA 5F91A 4BAAA 1GK2A 1FUQA 1FUPA 4C5RA 4C5SA 4V2QA 1J3UA 3CZOA 1I0AA 2QVEA 4V2RA 1K7WA 4NLEA 1TJ7A 3NO9A 2YIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OCF A;  3GTD A;  3OCE A;  1VDK A;  4FFX A;  4C6G A;  3GZH A;  4APB A;  4BAB A;  2PFM A;  4C5U A;  1C3C A;  1DCN A;  2PTQ A;  3KDZ A;  1Y2M A;  5EYV A;  4EFC A;  1DOF A;  1GKM A;  2O7F A;  1B8F A;  1TJW A;  1YFE A;  3NZ4 A;  1YFM A;  1TJV A;  1YIS A;  4APA A;  1T6P A;  5F92 A;  4ADM A;  2X75 A;  3C8T A;  3E04 A;  4MX2 A;  1C3U A;  1JSW A;  4CQ5 A;  1GK3 A;  5HW2 A;  2RJS A;  2NYF A;  2PTS A;  3RRP A;  1TJU A;  1Q5N A;  2J91 A;  2PTR A;  4NSL A;  1KQ7 A;  1AUW A;  2RJR A;  5EYT A;  2NYN A;  4ADL A;  2E9F A;  1U16 A;  3UNV A;  3RD8 A;  2QGA B;  2HVG A;  4EEI A;  1XWO A;  1U15 A;  5D6B A;  3R6V A;  1HY1 A;  3R6Q A;  4HGV A;  3QBP A;  1RE5 A;  2OHY A;  3KDY A;  2O78 A;  2VD6 A;  3R6Y A;  1T6J A;  1EB4 A;  2FUS A;  3TV2 A;  2O7D A;  2O7E A;  2O6Y A;  1FUO A;  4FLC A;  3BHG A;  1K62 A;  1W27 A;  1GKJ A;  1HY0 A;  1FUR A;  2O7B A;  5F91 A;  4BAA A;  1GK2 A;  1FUQ A;  1FUP A;  4C5R A;  4C5S A;  4V2Q A;  1J3U A;  3CZO A;  1I0A A;  2QVE A;  4V2R A;  1K7W A;  4NLE A;  1TJ7 A;  3NO9 A;  2YII A; 
#chains in the Genus database with same CATH topology
 3OCF A;  3GTD A;  3OCE A;  1VDK A;  1XMD A;  4FFX A;  1ZYR D;  3LRD A;  4C6G A;  3GZH A;  3LR8 A;  4APB A;  4BAB A;  2HWG A;  2FEN A;  2PFM A;  2EZC A;  2F5J A;  4C5U A;  1C3C A;  2FIP A;  1ZYM A;  1DCN A;  1TWG A;  4CEH A;  2PTQ A;  2K3Q A;  3CRV A;  3CQZ A;  2N3E A;  3KDZ A;  2CW0 D;  1XL7 A;  1Y2M A;  1Y1W A;  5EYV A;  4EFC A;  1WCM A;  1DOF A;  1HQM D;  1GKM A;  4A15 A;  2BE5 D;  3CZO A;  2O7F A;  1B8F A;  1TJW A;  1I6V D;  1YFE A;  3NZ4 A;  1YFM A;  1TJV A;  3GTP A;  1YIS A;  4APA A;  1T6P A;  5F92 A;  4ADM A;  2X75 A;  4CEI A;  2E2H A;  3C8T A;  1TWH A;  3U44 A;  2JA6 A;  4QIW A;  5H8W A;  2LPJ A;  1XL8 A;  2X0O A;  2Y0N A;  3E04 A;  4MX2 A;  1TWA A;  2A68 D;  4FBS A;  1C3U A;  1JSW A;  4CQ5 A;  1EZB A;  1GK3 A;  2RJS A;  5HW2 A;  2LKM B;  2NYF A;  2PTS A;  3RRP A;  2R7Z A;  1TJU A;  2VK9 A;  3GTQ A;  1Q5N A;  2J91 A;  2PTR A;  4NSL A;  2MX8 A;  1KQ7 A;  1YNJ D;  2X0P A;  3EZB A;  1AUW A;  2A6E D;  2K3N A;  2RJR A;  2X0Q A;  2MX9 A;  2A6H D;  3GTL A;  5EYT A;  2JA7 A;  2NYN A;  3GTO A;  2E9F A;  4ADL A;  2N1D B;  3CRW 1;  1U16 A;  3UNV A;  2R92 A;  3RD8 A;  2QGA B;  5M0I A;  2HVG A;  2VL7 A;  5M0J A;  4EEI A;  1XWO A;  1U15 A;  5D6B A;  1SMY D;  3GTJ A;  3GTM A;  1HY1 A;  3R6Q A;  3R6V A;  2EZB A;  3EZE A;  2LYI A;  4HGV A;  3EZA A;  3QBP A;  2NVY A;  1RE5 A;  2LPI A;  2OHY A;  1R9T A;  1TWC A;  2LTH A;  3KDY A;  1K83 A;  2O78 A;  2VD6 A;  3R6Y A;  3LR2 A;  2FIO A;  2A69 D;  1T6J A;  1EB4 A;  2FUS A;  1XMC A;  2HRO A;  3TV2 A;  2O7D A;  2NVX A;  2O7E A;  1IW7 D;  2EZA A;  3FKI A;  5IZ2 A;  2O6Y A;  1I50 A;  1YNN D;  2FEL A;  2R93 A;  1FUO A;  4FLC A;  4CEJ A;  3BHG A;  2MP0 A;  1K62 A;  1W27 A;  2VUM A;  1GKJ A;  1XLY A;  4WNL A;  3H0G A;  1HY0 A;  1FUR A;  3U4Q A;  2O7B A;  5F91 A;  1Y1V A;  1SFO A;  1I3Q A;  2VSF A;  4BAA A;  1GK2 A;  1FUQ A;  1FUP A;  2MQA A;  4C5R A;  3GTK A;  4C5S A;  1EZA A;  2K3O A;  1TWF A;  4V2Q A;  2YU9 A;  2E2I A;  3GTG A;  2B63 A;  1J3U A;  1I0A A;  2QVE A;  4V2R A;  4C2M A;  2JA5 A;  3LR6 A;  2AQL A;  1K7W A;  4NLE A;  1TJ7 A;  3NO9 A;  2O5J D;  2YII A; 
#chains in the Genus database with same CATH homology
 3OCF A;  3GTD A;  3OCE A;  1VDK A;  4FFX A;  4C6G A;  3GZH A;  4APB A;  4BAB A;  2PFM A;  4C5U A;  1C3C A;  1DCN A;  2PTQ A;  3KDZ A;  1Y2M A;  5EYV A;  4EFC A;  1DOF A;  1GKM A;  2O7F A;  1B8F A;  1TJW A;  1YFE A;  3NZ4 A;  1YFM A;  1TJV A;  1YIS A;  4APA A;  1T6P A;  5F92 A;  4ADM A;  2X75 A;  3C8T A;  3E04 A;  4MX2 A;  1C3U A;  1JSW A;  4CQ5 A;  1GK3 A;  5HW2 A;  2RJS A;  2NYF A;  2PTS A;  3RRP A;  1TJU A;  1Q5N A;  2J91 A;  2PTR A;  4NSL A;  1KQ7 A;  1AUW A;  2RJR A;  5EYT A;  2NYN A;  4ADL A;  2E9F A;  1U16 A;  3UNV A;  3RD8 A;  2QGA B;  2HVG A;  4EEI A;  1XWO A;  1U15 A;  5D6B A;  3R6V A;  1HY1 A;  3R6Q A;  4HGV A;  3QBP A;  1RE5 A;  2OHY A;  3KDY A;  2O78 A;  2VD6 A;  3R6Y A;  1T6J A;  1EB4 A;  2FUS A;  3TV2 A;  2O7D A;  2O7E A;  2O6Y A;  1FUO A;  4FLC A;  3BHG A;  1K62 A;  1W27 A;  1GKJ A;  1HY0 A;  1FUR A;  2O7B A;  5F91 A;  4BAA A;  1GK2 A;  1FUQ A;  1FUP A;  4C5R A;  4C5S A;  4V2Q A;  1J3U A;  3CZO A;  1I0A A;  2QVE A;  4V2R A;  1K7W A;  4NLE A;  1TJ7 A;  3NO9 A;  2YII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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