4W6VA

Crystal structure of a peptide transporter from yersinia enterocolitica at 3 a resolution
Total Genus 179
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
499
structure length
483
Chain Sequence
STNTPGGRTFFGHPYPLSGLFLSEMWERFSFYGIRPLLILFMAATVFDGGMGLPREQASAIVGIFAGSMYLAALPGGLLADNWLGQQRAVWYGSILIALGHLSIALSAFFGNDLFFIGLVFIVLGTGLFKTCISVMVGTLYKPGDARRDGGFSLFYMGINMGSFIAPLLSGWLLRTHGWHWGFGIGGIGMLVALLIFRGFAIPAMKRYDAEVGLDSSWNKPTGRWVTAIMAVVVVIIALISQGVIPINPVMIASLLVYVIAASVTLYFIYLFAFAKMSRKDRARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTDRMVMGFEIPTVWFQSINALFIILLAPVFSWAPSSITKFVIGILCAAAGFAVMMYAAQHVLSSGGAGVSPLWLVMSILLLTLGELCLSPIGLATMTLLAPDRMRGQVMGLWFCASSLGNLAAGLIGGHVKADQLDMLPTLFARCSIALVICAAVLILLIVPIRRLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Role of electrostatic interactions for ligand recognition and specificity of peptide transporters.
pubmed doi rcsb
molecule keywords Di-/tripeptide transporter
molecule tags Transport protein
source organism Yersinia enterocolitica subsp. palearctica ye-p4
total genus 179
structure length 483
sequence length 499
ec nomenclature
pdb deposition date 2014-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4w6vA00
4D2BA 4YB9D 4TPHA 1PW4A 2V8NA 4APSA 4IKWA 4LDSA 2CFPA 4ZWBA 4IKYA 4TPGA 4IKVA 4JR9A 2XUTA 4QIQA 4IKZA 5A2OA 5EQHA 4GC0A 4D2DA 4IU9A 4TPJA 2CFQA 4XNJA 4ZW9A 3O7QA 4UVMA 5D6KA 4OAAA 4U4TA 4IKXA 4Q65A 4PYPA 4U4VA 4YBQA 5EQGA 5GXBA 3O7PA 4D2CA 3WDOA 4J05A 5EQIA 4GBYA 4U4WA 4JA3A 1PV7A 2Y5YA 5A2NA 1PV6A 4OH3A 5C65A 5D58A 4IU8A 5D59A 4JREA 4ZYRA 4W6VA 4XNIA 4LEPA 4GBZA 4ZWCA
chains in the Genus database with same CATH superfamily
5IP7D 4CNIC 4LDSA 5A2OA 1A22A 3D87A 2CFQA 1IK0A 3D48P 3QB7A 4Q65A 1PV7A 3D85C 2O6IA 2D9QA 3BPNA 1ALUA 1HWGA 4IU8A 4JREA 1FYHA 1LQSL 1F6FA 4I77Z 1ITIA 2ILKA 4BXXD 1AU1A 2XUTA 1BGCA 4ZF7A 1EKUA 4YDYI 3QB1A 5TS9A 1QVNA 3SE3B 3QT2C 4LEPA 1CD9A 1SCFA 2B63D 1CSGA 1YKBA 4D2DA 2INTA 3Q1SI 1M4CA 1Z7CA 1IARA 4NKQC 3O7PA 1ITLA 4GBYA 4NN7A 1D9GA 1CYLA 3PO3D 4WRLB 3WCYI 1M48A 1PW4A 5FUCA 4IKWA 1KF9A 1RCBA 1PW6A 4QIQA 2B8XA 3BESL 1VLKA 1HUWA 1BGDA 4J05A 4YPGC 3QAZA 4A3JD 3QWRB 3DI2A 4ZYRA 2GMFA 1BGEA 1Y14A 1BBNA 3MZGA 1GNCA 4IKZA 1A7MA 2LMSA 2Q14A 3O7QA 2B5IA 1ETEA 3PO2D 5D70A 2CYKA 3HHRA 1HWHA 1CN4C 3HOYD 2R7ZD 1ILKA 2HYMB 3NCFA 4A3KD 4BBSD 3DI3A 1HIJA 3DUHC 1NBPA 1IJZA 4TPJA 4NI7A 3PIWA 2D48A 2JA5D 1WU3I 2Q98A 4EXPA 1V7NV 4IKXA 2PSMA 1BCNA 4U4WA 1BUYA 4FA8E 3G9VB 5D58A 1M4BA 4DKDA 1RW5A 3LB6A 3OQ3A 1HULA 3I4MD 4EXNA 2E9WC 4D2BA 1HZIA 3VA2A 1J7VL 3S9DA 5EQHA 3OG4A 5D28B 3UF2A 1AX8A 5C65A 2XQBA 3UF5A 4GBZA 2KZ1A 1WCMD 2B90A 2V8NA 2VUMD 3UEZE 4A3BD 1Y1VD 5IYDD 4NEJA 1INRA 5FLMD 1JLIA 4NN5A 4U4TA 5GXBA 2ERJD 5D22A 2IL6A 1CNT1 2R92D 1P9MB 2LAGA 3AYHA 4DKEA 1GA3A 3INKC 1Y1WD 1ITMA 4A3GD 3H0GD 3DGCL 4O6KA 1Y6KL 2Z3QA 4OAAA 4J4LC 4A93D 3HMXB 4W6VA 2OQPA 3N06A 2R93D 3NCBA 4GS7A 4MHLA 2C35A 4XNJA 3SE4B 3WDOA 1F45B 4JA3A 1BP3A 4PS4A 4YQXA 1B5LA 3PIVA 1N1FA 4YB9D 1PVHB 5FHXA 4TPGA 3HOXD 5IYBD 4GC0A 4DKFA 1IRLA 2B91A 4YBQA 5EQGA 3B5KA 3TGXB 3LB6B 3NCEA 4DKCA 4A3MD 5A2NA 5D59A 4X51A 4A3FD 4TPHA 1AXIA 1RHGA 2CFPA 4A3LD 2O26A 1FG9A 4ZS7A 3EW3A 2Z3RA 4A3CD 4A3ED 1EVSA 2B8UA 4D2CA 4GRWA 1IL6A 3UX9A 3G6DA 2Y5YA 4A3DD 1PV6A 2H24A 1HIKA 1Y6ML 5C4XD 3HOZD 4JR9A 1M4AA 1D9CA 4IU9A 4BY7D 3FKID 5C44D 2L3OA 4RS1A 2B8ZA 5C3ED 1Z92A 1LKIA 4OH3A 3OG6A 2O27A 1M47A 1I1RB 3HOWD 4APSA 4ZWBA 5D71A 1HGUA 5KNHI 3NPZA 3BPOA 5C7XA 4LRLA 3IRHA 4NN6A 2JA7D 3DLQI 4YUEC 4BBRD 3N0PA 1M49A 1M4RA 4NI9A 3H3VE 3NCCA 1EERA 4IKYA 4IKVA 4Z5RD 1EMRA 4ZW9A 4O9HA 3HOVD 4U4VA 1EXZA 5IP9D 1PGRA 4NEMA 1ITFA 1LK3A 5IYCD 3I4ND 3HHCA 4XNIA 2Q7NB 2JA6D 2JA8D 2L3YA 5L6YC 5E4EA 1PY2A 3HOUD 4UVMA 5D6KA 4PYPA 4A3ID 4DOHA 5EQIA 4BY1D 1V7MV 3EJJA 3BPLA 3L5WI 5D72A 1RFBA 2B8YA 5LQBA 1Y6NL 4ZWCA 3L5XA
chains in the Genus database with same CATH topology
4D2BA 4YB9D 4TPHA 1PW4A 2V8NA 4APSA 4IKWA 4LDSA 2CFPA 4ZWBA 4IKYA 4TPGA 4IKVA 4JR9A 2XUTA 4QIQA 4IKZA 5A2OA 5EQHA 4GC0A 4D2DA 4IU9A 4TPJA 2CFQA 4XNJA 4ZW9A 3O7QA 4UVMA 5D6KA 4OAAA 4U4TA 4IKXA 4Q65A 4PYPA 4U4VA 4YBQA 5EQGA 5GXBA 3O7PA 4D2CA 3WDOA 4J05A 5EQIA 4GBYA 4U4WA 4JA3A 1PV7A 2Y5YA 5A2NA 1PV6A 4OH3A 5C65A 5D58A 4IU8A 5D59A 4JREA 4ZYRA 4W6VA 4XNIA 4LEPA 4GBZA 4ZWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D2B A;  4YB9 D;  4TPH A;  1PW4 A;  2V8N A;  4APS A;  4IKW A;  4LDS A;  2CFP A;  4ZWB A;  4IKY A;  4TPG A;  4IKV A;  4JR9 A;  2XUT A;  4QIQ A;  4IKZ A;  5A2O A;  5EQH A;  4GC0 A;  4D2D A;  4IU9 A;  4TPJ A;  2CFQ A;  4XNJ A;  4ZW9 A;  3O7Q A;  4UVM A;  5D6K A;  4OAA A;  4U4T A;  4IKX A;  4Q65 A;  4PYP A;  4U4V A;  4YBQ A;  5EQG A;  5GXB A;  3O7P A;  4D2C A;  3WDO A;  4J05 A;  5EQI A;  4GBY A;  4U4W A;  4JA3 A;  1PV7 A;  2Y5Y A;  5A2N A;  1PV6 A;  4OH3 A;  5C65 A;  5D58 A;  4IU8 A;  5D59 A;  4JRE A;  4ZYR A;  4W6V A;  4XNI A;  4LEP A;  4GBZ A;  4ZWC A; 
#chains in the Genus database with same CATH topology
 5IP7 D;  4CNI C;  4LDS A;  5A2O A;  1A22 A;  3D87 A;  2CFQ A;  1IK0 A;  3D48 P;  3QB7 A;  4Q65 A;  1PV7 A;  3D85 C;  2O6I A;  2D9Q A;  3BPN A;  1ALU A;  1HWG A;  4IU8 A;  4JRE A;  1FYH A;  1LQS L;  1F6F A;  4I77 Z;  1ITI A;  2ILK A;  4BXX D;  1AU1 A;  2XUT A;  1BGC A;  4ZF7 A;  1EKU A;  4YDY I;  3QB1 A;  5TS9 A;  1QVN A;  3SE3 B;  3QT2 C;  4LEP A;  1CD9 A;  1SCF A;  2B63 D;  1CSG A;  1YKB A;  4D2D A;  2INT A;  3Q1S I;  1M4C A;  1Z7C A;  1IAR A;  4NKQ C;  3O7P A;  1ITL A;  4GBY A;  4NN7 A;  1D9G A;  1CYL A;  3PO3 D;  4WRL B;  3WCY I;  1M48 A;  1PW4 A;  5FUC A;  4IKW A;  1KF9 A;  1RCB A;  1PW6 A;  4QIQ A;  2B8X A;  3BES L;  1VLK A;  1HUW A;  1BGD A;  4J05 A;  4YPG C;  3QAZ A;  4A3J D;  3QWR B;  3DI2 A;  4ZYR A;  2GMF A;  1BGE A;  1Y14 A;  1BBN A;  3MZG A;  1GNC A;  4IKZ A;  1A7M A;  2LMS A;  2Q14 A;  3O7Q A;  2B5I A;  1ETE A;  3PO2 D;  5D70 A;  2CYK A;  3HHR A;  1HWH A;  1CN4 C;  3HOY D;  2R7Z D;  1ILK A;  2HYM B;  3NCF A;  4A3K D;  4BBS D;  3DI3 A;  1HIJ A;  3DUH C;  1NBP A;  1IJZ A;  4TPJ A;  4NI7 A;  3PIW A;  2D48 A;  2JA5 D;  1WU3 I;  2Q98 A;  4EXP A;  1V7N V;  4IKX A;  2PSM A;  1BCN A;  4U4W A;  1BUY A;  4FA8 E;  3G9V B;  5D58 A;  1M4B A;  4DKD A;  1RW5 A;  3LB6 A;  3OQ3 A;  1HUL A;  3I4M D;  4EXN A;  2E9W C;  4D2B A;  1HZI A;  3VA2 A;  1J7V L;  3S9D A;  5EQH A;  3OG4 A;  5D28 B;  3UF2 A;  1AX8 A;  5C65 A;  2XQB A;  3UF5 A;  4GBZ A;  2KZ1 A;  1WCM D;  2B90 A;  2V8N A;  2VUM D;  3UEZ E;  4A3B D;  1Y1V D;  5IYD D;  4NEJ A;  1INR A;  5FLM D;  1JLI A;  4NN5 A;  4U4T A;  5GXB A;  2ERJ D;  5D22 A;  2IL6 A;  1CNT 1;  2R92 D;  1P9M B;  2LAG A;  3AYH A;  4DKE A;  1GA3 A;  3INK C;  1Y1W D;  1ITM A;  4A3G D;  3H0G D;  3DGC L;  4O6K A;  1Y6K L;  2Z3Q A;  4OAA A;  4J4L C;  4A93 D;  3HMX B;  4W6V A;  2OQP A;  3N06 A;  2R93 D;  3NCB A;  4GS7 A;  4MHL A;  2C35 A;  4XNJ A;  3SE4 B;  3WDO A;  1F45 B;  4JA3 A;  1BP3 A;  4PS4 A;  4YQX A;  1B5L A;  3PIV A;  1N1F A;  4YB9 D;  1PVH B;  5FHX A;  4TPG A;  3HOX D;  5IYB D;  4GC0 A;  4DKF A;  1IRL A;  2B91 A;  4YBQ A;  5EQG A;  3B5K A;  3TGX B;  3LB6 B;  3NCE A;  4DKC A;  4A3M D;  5A2N A;  5D59 A;  4X51 A;  4A3F D;  4TPH A;  1AXI A;  1RHG A;  2CFP A;  4A3L D;  2O26 A;  1FG9 A;  4ZS7 A;  3EW3 A;  2Z3R A;  4A3C D;  4A3E D;  1EVS A;  2B8U A;  4D2C A;  4GRW A;  1IL6 A;  3UX9 A;  3G6D A;  2Y5Y A;  4A3D D;  1PV6 A;  2H24 A;  1HIK A;  1Y6M L;  5C4X D;  3HOZ D;  4JR9 A;  1M4A A;  1D9C A;  4IU9 A;  4BY7 D;  3FKI D;  5C44 D;  2L3O A;  4RS1 A;  2B8Z A;  5C3E D;  1Z92 A;  1LKI A;  4OH3 A;  3OG6 A;  2O27 A;  1M47 A;  1I1R B;  3HOW D;  4APS A;  4ZWB A;  5D71 A;  1HGU A;  5KNH I;  3NPZ A;  3BPO A;  5C7X A;  4LRL A;  3IRH A;  4NN6 A;  2JA7 D;  3DLQ I;  4YUE C;  4BBR D;  3N0P A;  1M49 A;  1M4R A;  4NI9 A;  3H3V E;  3NCC A;  1EER A;  4IKY A;  4IKV A;  4Z5R D;  1EMR A;  4ZW9 A;  4O9H A;  3HOV D;  4U4V A;  1EXZ A;  5IP9 D;  1PGR A;  4NEM A;  1ITF A;  1LK3 A;  5IYC D;  3I4N D;  3HHC A;  4XNI A;  2Q7N B;  2JA6 D;  2JA8 D;  2L3Y A;  5L6Y C;  5E4E A;  1PY2 A;  3HOU D;  4UVM A;  5D6K A;  4PYP A;  4A3I D;  4DOH A;  5EQI A;  4BY1 D;  1V7M V;  3EJJ A;  3BPL A;  3L5W I;  5D72 A;  1RFB A;  2B8Y A;  5LQB A;  1Y6N L;  4ZWC A;  3L5X A; 
#chains in the Genus database with same CATH homology
 4D2B A;  4YB9 D;  4TPH A;  1PW4 A;  2V8N A;  4APS A;  4IKW A;  4LDS A;  2CFP A;  4ZWB A;  4IKY A;  4TPG A;  4IKV A;  4JR9 A;  2XUT A;  4QIQ A;  4IKZ A;  5A2O A;  5EQH A;  4GC0 A;  4D2D A;  4IU9 A;  4TPJ A;  2CFQ A;  4XNJ A;  4ZW9 A;  3O7Q A;  4UVM A;  5D6K A;  4OAA A;  4U4T A;  4IKX A;  4Q65 A;  4PYP A;  4U4V A;  4YBQ A;  5EQG A;  5GXB A;  3O7P A;  4D2C A;  3WDO A;  4J05 A;  5EQI A;  4GBY A;  4U4W A;  4JA3 A;  1PV7 A;  2Y5Y A;  5A2N A;  1PV6 A;  4OH3 A;  5C65 A;  5D58 A;  4IU8 A;  5D59 A;  4JRE A;  4ZYR A;  4W6V A;  4XNI A;  4LEP A;  4GBZ A;  4ZWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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