4W8SA

Crystal structure of truncated hemolysin a q125s/y134s from p. mirabilis at 1.5 angstroms resolution
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
234
structure length
234
Chain Sequence
NGIVPDAGHQGPDVSAVNGGTQVINIVTPNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGHLNANSNLNGQAASLILNEVVSRNPSFLLGQSEVFGIAAESVLSNPNGITCDGCGFINTSRSSLVVGNPLFENGQLKGYSTLNNTNLLSLGKNGLNTTGLLDLIAPRIDSRGKITAAEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQSGRIRIINTAEGSGVKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Proteus mirabilis
publication title Crystal structure of truncated hemolysin A Q125S/Y134S from P. mirabilis at 1.5 Angstroms resolution
rcsb
molecule keywords Hemolysin
total genus 82
structure length 234
sequence length 234
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05860 Haemagg_act haemagglutination activity domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4w8sA00
4XL9A 2VJJA 2EWEA 4XMYA 3T9GA 2O0VA 4XLFA 3GQ7A 1RMGA 4W8SA 4XLAA 1IA5A 4W8QA 1AIRA 4XONA 3KRGA 3ZPPA 4NK6A 2VJIA 4XR6A 1OFMA 2PYHA 3LMWA 1O8GA 3VMVA 4W8TA 4AVZA 4XOTA 3VSTA 4Z06A 1OOCA 1KCDA 1RU4A 4YZXA 4OJ6A 4XKVA 3SUCA 4U49A 2PYGA 1O8HA 2UVFA 4C2LA 4EW9A 1X0CA 4OJPA 4XLCA 2NTPA 4Z03A 1DBGA 4XQFA 2O0WA 2IQ7A 3B8YA 3EQNA 3B90A 3GQ9A 4YELA 1O8FA 1PLUA 1BN8A 2BSPA 3ZSCA 1XG2A 4OZZA 5AMVA 3B4NA 4OZYA 4OJ5A 1WMRA 2NT6A 1OGOX 4XM3A 5C1EA 1JRGA 2NSPA 4URRA 2NTBA 2INVA 4XLEA 4HWVA 2NTQA 2PECA 1QJVA 4XNFA 1OFLA 2O04A 4YZQA 3VSUA 1H80A 1QCXA 4MXNA 1OGMX 2NT9A 3VMWA 4NK8A 1O8KA 1O88A 2O17A 2VBEA 1IB4A 1PE9A 3EQOA 1BHEA 1O8IA 2INUA 2QY1A 4I84A 1K5CA 1O8MA 2NZMA 2ODLA 2QX3A 2X6YA 4OJOA 4YZAA 5C1CA 3GQAA 2VBKA 4YZ0A 4Z05A 1CZFA 4XLHA 1PXZA 1O8LA 3UW0A 2QXZA 2UVEA 2X6XA 1RWRA 1JTAA 3JURA 3WWGA 4OJLA 1IDJA 3GQ8A 1O8EA 1DBOA 1EE6A 4U4BA 1HG8A 4W8RA 1O8DA 1KCCA 4YEJA 1IDKA 3VSVA 1KTWA 4MR0A 2X3HA 2O1DA 2X85A 3FY3A 4XN0A 2VBMA 4XOPA 2X6WA 4PMHA 4XN3A 4XORA 1NHCA 3GRHA 4XKWA 1VBLA 2Z8GA 2NSTA 1GQ8A 1O8JA
chains in the Genus database with same CATH superfamily
4XL9A 1LLWA 2O6WA 2VJJA 5JLVC 2EWEA 1QA3A 4XMYA 2J8IA 4JRAC 3T9GA 2O0VA 2YUHA 2XTYA 4XLFA 2B0RA 1RMGA 3GQ7A 4W8SA 4XLAA 4W8QA 1AIRA 1IA5A 4XONA 3KRGA 2XTWA 2BX6A 4NK6A 2VJIA 3ZPPA 3RIQA 4XR6A 1OFMA 2PYHA 2QZAA 2VFOA 1CLWA 3LMWA 1O8GA 3VMVA 3LJYA 4W8TA 5JMCB 4AVZA 4XOTA 3VSTA 3SQVA 1WXRA 4Z06A 1OOCA 1KCDA 1RU4A 3PETA 4YZXA 3N6ZA 1TYUA 1LM1A 2BM4A 4OJ6A 4XKVA 4U49A 3SUCA 3H09A 5DNSA 3TH0A 2PYGA 1O8HA 1QRCA 2UVFA 2XTXA 4C2LA 1X0CA 4OJPA 2XT4A 4EW9A 4XLCA 2NTPA 4Z03A 1DBGA 2BM6A 3SZEA 4XQFA 2O0WA 2IQ7A 2VFNA 2J8KA 1QRBA 3B8YA 3EQNA 3B90A 3GQ9A 4YDTA 4YELA 3SY2A 1O8FA 1DABA 1PLUA 1BN8A 2BSPA 3ZSCA 1XG2A 3N90A 4OZZA 5AMVA 3B4NA 2XT2A 4OZYA 4OJ5A 1WMRA 3NAWA 2V5IA 2NT6A 2IOUG 3SYJA 1OGOX 4V02C 4XM3A 1QA1A 4OM9A 5C1EA 1JRGA 1TYVA 2NSPA 4URRA 3PSZA 2NTBA 2INVA 4XLEA 4HWVA 2BM7A 2F3LA 2NTQA 2BM5A 2PECA 1QJVA 4XNFA 1OFLA 4YEIA 2O04A 4YZQA 3VSUA 1H80A 1QCXA 4MXNA 1OGMX 4YFOA 2NT9A 3VMWA 1KQ5A 1O8KA 1O88A 4NK8A 1HF2A 3P4GA 1K4ZA 2O17A 2VBEA 1IB4A 1PE9A 3EQOA 1BHEA 1O8IA 2INUA 2QY1A 4I84A 1K5CA 1O8MA 3AK5A 2NZMA 2ODLA 3BH6B 3NB2A 2QX3A 2X6YA 4OJOA 4YZAA 5C1CA 1LLZA 3GQAA 2VBKA 4YZ0A 3JX8A 4Z05A 1CZFA 4XLHA 1PXZA 1O8LA 2VFMA 1EZGA 4YCQA 3UW0A 2QXZA 3PSSA 2UVEA 2X6XA 3ML3A 1RWRA 1JTAA 3JURA 3WWGA 4OJLA 1IDJA 1QA2A 3GQ8A 1DBOA 1O8EA 1EE6A 2VFQA 4U4BA 1HG8A 4W8RA 3LYCA 1K8FA 1O8DA 1OFEA 1KCCA 1TYXA 4YC5A 4YEJA 1IDKA 3VSVA 1KTWA 4MR0A 2X3HA 2O1DA 2X85A 4KH3A 3FY3A 4XN0A 2VBMA 4XOPA 2X6WA 4PMHA 1OFDA 1TSPA 4XN3A 4XORA 4OPWA 1TYWA 2QYUA 1NHCA 2G0YA 3GRHA 4XKWA 1VBLA 2Z8GA 1L1IA 2VFPA 1EA0A 2W7ZA 3BH7B 1QQ1A 2NSTA 2XC1A 1GQ8A 1O8JA 3DU1X
chains in the Genus database with same CATH topology
4XL9A 2VJJA 2EWEA 4XMYA 3T9GA 2O0VA 4XLFA 3GQ7A 1RMGA 4W8SA 4XLAA 1IA5A 4W8QA 1AIRA 4XONA 3KRGA 3ZPPA 4NK6A 2VJIA 4XR6A 1OFMA 2PYHA 3LMWA 1O8GA 3VMVA 4W8TA 4AVZA 4XOTA 3VSTA 4Z06A 1OOCA 1KCDA 1RU4A 4YZXA 4OJ6A 4XKVA 3SUCA 4U49A 2PYGA 1O8HA 2UVFA 4C2LA 4EW9A 1X0CA 4OJPA 4XLCA 2NTPA 4Z03A 1DBGA 4XQFA 2O0WA 2IQ7A 3B8YA 3EQNA 3B90A 3GQ9A 4YELA 1O8FA 1PLUA 1BN8A 2BSPA 3ZSCA 1XG2A 4OZZA 5AMVA 3B4NA 4OZYA 4OJ5A 1WMRA 2NT6A 1OGOX 4XM3A 5C1EA 1JRGA 2NSPA 4URRA 2NTBA 2INVA 4XLEA 4HWVA 2NTQA 2PECA 1QJVA 4XNFA 1OFLA 2O04A 4YZQA 3VSUA 1H80A 1QCXA 4MXNA 1OGMX 2NT9A 3VMWA 4NK8A 1O8KA 1O88A 2O17A 2VBEA 1IB4A 1PE9A 3EQOA 1BHEA 1O8IA 2INUA 2QY1A 4I84A 1K5CA 1O8MA 2NZMA 2ODLA 2QX3A 2X6YA 4OJOA 4YZAA 5C1CA 3GQAA 2VBKA 4YZ0A 4Z05A 1CZFA 4XLHA 1PXZA 1O8LA 3UW0A 2QXZA 2UVEA 2X6XA 1RWRA 1JTAA 3JURA 3WWGA 4OJLA 1IDJA 3GQ8A 1O8EA 1DBOA 1EE6A 4U4BA 1HG8A 4W8RA 1O8DA 1KCCA 4YEJA 1IDKA 3VSVA 1KTWA 4MR0A 2X3HA 2O1DA 2X85A 3FY3A 4XN0A 2VBMA 4XOPA 2X6WA 4PMHA 4XN3A 4XORA 1NHCA 3GRHA 4XKWA 1VBLA 2Z8GA 2NSTA 1GQ8A 1O8JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XL9 A;  2VJJ A;  2EWE A;  4XMY A;  3T9G A;  2O0V A;  4XLF A;  3GQ7 A;  1RMG A;  4W8S A;  4XLA A;  1IA5 A;  4W8Q A;  1AIR A;  4XON A;  3KRG A;  3ZPP A;  4NK6 A;  2VJI A;  4XR6 A;  1OFM A;  2PYH A;  3LMW A;  1O8G A;  3VMV A;  4W8T A;  4AVZ A;  4XOT A;  3VST A;  4Z06 A;  1OOC A;  1KCD A;  1RU4 A;  4YZX A;  4OJ6 A;  4XKV A;  3SUC A;  4U49 A;  2PYG A;  1O8H A;  2UVF A;  4C2L A;  4EW9 A;  1X0C A;  4OJP A;  4XLC A;  2NTP A;  4Z03 A;  1DBG A;  4XQF A;  2O0W A;  2IQ7 A;  3B8Y A;  3EQN A;  3B90 A;  3GQ9 A;  4YEL A;  1O8F A;  1PLU A;  1BN8 A;  2BSP A;  3ZSC A;  1XG2 A;  4OZZ A;  5AMV A;  3B4N A;  4OZY A;  4OJ5 A;  1WMR A;  2NT6 A;  1OGO X;  4XM3 A;  5C1E A;  1JRG A;  2NSP A;  4URR A;  2NTB A;  2INV A;  4XLE A;  4HWV A;  2NTQ A;  2PEC A;  1QJV A;  4XNF A;  1OFL A;  2O04 A;  4YZQ A;  3VSU A;  1H80 A;  1QCX A;  4MXN A;  1OGM X;  2NT9 A;  3VMW A;  4NK8 A;  1O8K A;  1O88 A;  2O17 A;  2VBE A;  1IB4 A;  1PE9 A;  3EQO A;  1BHE A;  1O8I A;  2INU A;  2QY1 A;  4I84 A;  1K5C A;  1O8M A;  2NZM A;  2ODL A;  2QX3 A;  2X6Y A;  4OJO A;  4YZA A;  5C1C A;  3GQA A;  2VBK A;  4YZ0 A;  4Z05 A;  1CZF A;  4XLH A;  1PXZ A;  1O8L A;  3UW0 A;  2QXZ A;  2UVE A;  2X6X A;  1RWR A;  1JTA A;  3JUR A;  3WWG A;  4OJL A;  1IDJ A;  3GQ8 A;  1O8E A;  1DBO A;  1EE6 A;  4U4B A;  1HG8 A;  4W8R A;  1O8D A;  1KCC A;  4YEJ A;  1IDK A;  3VSV A;  1KTW A;  4MR0 A;  2X3H A;  2O1D A;  2X85 A;  3FY3 A;  4XN0 A;  2VBM A;  4XOP A;  2X6W A;  4PMH A;  4XN3 A;  4XOR A;  1NHC A;  3GRH A;  4XKW A;  1VBL A;  2Z8G A;  2NST A;  1GQ8 A;  1O8J A; 
#chains in the Genus database with same CATH topology
 4XL9 A;  1LLW A;  2O6W A;  2VJJ A;  5JLV C;  2EWE A;  1QA3 A;  4XMY A;  2J8I A;  4JRA C;  3T9G A;  2O0V A;  2YUH A;  2XTY A;  4XLF A;  2B0R A;  1RMG A;  3GQ7 A;  4W8S A;  4XLA A;  4W8Q A;  1AIR A;  1IA5 A;  4XON A;  3KRG A;  2XTW A;  2BX6 A;  4NK6 A;  2VJI A;  3ZPP A;  3RIQ A;  4XR6 A;  1OFM A;  2PYH A;  2QZA A;  2VFO A;  1CLW A;  3LMW A;  1O8G A;  3VMV A;  3LJY A;  4W8T A;  5JMC B;  4AVZ A;  4XOT A;  3VST A;  3SQV A;  1WXR A;  4Z06 A;  1OOC A;  1KCD A;  1RU4 A;  3PET A;  4YZX A;  3N6Z A;  1TYU A;  1LM1 A;  2BM4 A;  4OJ6 A;  4XKV A;  4U49 A;  3SUC A;  3H09 A;  5DNS A;  3TH0 A;  2PYG A;  1O8H A;  1QRC A;  2UVF A;  2XTX A;  4C2L A;  1X0C A;  4OJP A;  2XT4 A;  4EW9 A;  4XLC A;  2NTP A;  4Z03 A;  1DBG A;  2BM6 A;  3SZE A;  4XQF A;  2O0W A;  2IQ7 A;  2VFN A;  2J8K A;  1QRB A;  3B8Y A;  3EQN A;  3B90 A;  3GQ9 A;  4YDT A;  4YEL A;  3SY2 A;  1O8F A;  1DAB A;  1PLU A;  1BN8 A;  2BSP A;  3ZSC A;  1XG2 A;  3N90 A;  4OZZ A;  5AMV A;  3B4N A;  2XT2 A;  4OZY A;  4OJ5 A;  1WMR A;  3NAW A;  2V5I A;  2NT6 A;  2IOU G;  3SYJ A;  1OGO X;  4V02 C;  4XM3 A;  1QA1 A;  4OM9 A;  5C1E A;  1JRG A;  1TYV A;  2NSP A;  4URR A;  3PSZ A;  2NTB A;  2INV A;  4XLE A;  4HWV A;  2BM7 A;  2F3L A;  2NTQ A;  2BM5 A;  2PEC A;  1QJV A;  4XNF A;  1OFL A;  4YEI A;  2O04 A;  4YZQ A;  3VSU A;  1H80 A;  1QCX A;  4MXN A;  1OGM X;  4YFO A;  2NT9 A;  3VMW A;  1KQ5 A;  1O8K A;  1O88 A;  4NK8 A;  1HF2 A;  3P4G A;  1K4Z A;  2O17 A;  2VBE A;  1IB4 A;  1PE9 A;  3EQO A;  1BHE A;  1O8I A;  2INU A;  2QY1 A;  4I84 A;  1K5C A;  1O8M A;  3AK5 A;  2NZM A;  2ODL A;  3BH6 B;  3NB2 A;  2QX3 A;  2X6Y A;  4OJO A;  4YZA A;  5C1C A;  1LLZ A;  3GQA A;  2VBK A;  4YZ0 A;  3JX8 A;  4Z05 A;  1CZF A;  4XLH A;  1PXZ A;  1O8L A;  2VFM A;  1EZG A;  4YCQ A;  3UW0 A;  2QXZ A;  3PSS A;  2UVE A;  2X6X A;  3ML3 A;  1RWR A;  1JTA A;  3JUR A;  3WWG A;  4OJL A;  1IDJ A;  1QA2 A;  3GQ8 A;  1DBO A;  1O8E A;  1EE6 A;  2VFQ A;  4U4B A;  1HG8 A;  4W8R A;  3LYC A;  1K8F A;  1O8D A;  1OFE A;  1KCC A;  1TYX A;  4YC5 A;  4YEJ A;  1IDK A;  3VSV A;  1KTW A;  4MR0 A;  2X3H A;  2O1D A;  2X85 A;  4KH3 A;  3FY3 A;  4XN0 A;  2VBM A;  4XOP A;  2X6W A;  4PMH A;  1OFD A;  1TSP A;  4XN3 A;  4XOR A;  4OPW A;  1TYW A;  2QYU A;  1NHC A;  2G0Y A;  3GRH A;  4XKW A;  1VBL A;  2Z8G A;  1L1I A;  2VFP A;  1EA0 A;  2W7Z A;  3BH7 B;  1QQ1 A;  2NST A;  2XC1 A;  1GQ8 A;  1O8J A;  3DU1 X; 
#chains in the Genus database with same CATH homology
 4XL9 A;  2VJJ A;  2EWE A;  4XMY A;  3T9G A;  2O0V A;  4XLF A;  3GQ7 A;  1RMG A;  4W8S A;  4XLA A;  1IA5 A;  4W8Q A;  1AIR A;  4XON A;  3KRG A;  3ZPP A;  4NK6 A;  2VJI A;  4XR6 A;  1OFM A;  2PYH A;  3LMW A;  1O8G A;  3VMV A;  4W8T A;  4AVZ A;  4XOT A;  3VST A;  4Z06 A;  1OOC A;  1KCD A;  1RU4 A;  4YZX A;  4OJ6 A;  4XKV A;  3SUC A;  4U49 A;  2PYG A;  1O8H A;  2UVF A;  4C2L A;  4EW9 A;  1X0C A;  4OJP A;  4XLC A;  2NTP A;  4Z03 A;  1DBG A;  4XQF A;  2O0W A;  2IQ7 A;  3B8Y A;  3EQN A;  3B90 A;  3GQ9 A;  4YEL A;  1O8F A;  1PLU A;  1BN8 A;  2BSP A;  3ZSC A;  1XG2 A;  4OZZ A;  5AMV A;  3B4N A;  4OZY A;  4OJ5 A;  1WMR A;  2NT6 A;  1OGO X;  4XM3 A;  5C1E A;  1JRG A;  2NSP A;  4URR A;  2NTB A;  2INV A;  4XLE A;  4HWV A;  2NTQ A;  2PEC A;  1QJV A;  4XNF A;  1OFL A;  2O04 A;  4YZQ A;  3VSU A;  1H80 A;  1QCX A;  4MXN A;  1OGM X;  2NT9 A;  3VMW A;  4NK8 A;  1O8K A;  1O88 A;  2O17 A;  2VBE A;  1IB4 A;  1PE9 A;  3EQO A;  1BHE A;  1O8I A;  2INU A;  2QY1 A;  4I84 A;  1K5C A;  1O8M A;  2NZM A;  2ODL A;  2QX3 A;  2X6Y A;  4OJO A;  4YZA A;  5C1C A;  3GQA A;  2VBK A;  4YZ0 A;  4Z05 A;  1CZF A;  4XLH A;  1PXZ A;  1O8L A;  3UW0 A;  2QXZ A;  2UVE A;  2X6X A;  1RWR A;  1JTA A;  3JUR A;  3WWG A;  4OJL A;  1IDJ A;  3GQ8 A;  1O8E A;  1DBO A;  1EE6 A;  4U4B A;  1HG8 A;  4W8R A;  1O8D A;  1KCC A;  4YEJ A;  1IDK A;  3VSV A;  1KTW A;  4MR0 A;  2X3H A;  2O1D A;  2X85 A;  3FY3 A;  4XN0 A;  2VBM A;  4XOP A;  2X6W A;  4PMH A;  4XN3 A;  4XOR A;  1NHC A;  3GRH A;  4XKW A;  1VBL A;  2Z8G A;  2NST A;  1GQ8 A;  1O8J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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