4W8SA

Crystal structure of truncated hemolysin a q125s/y134s from p. mirabilis at 1.5 angstroms resolution
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
234
structure length
234
Chain Sequence
NGIVPDAGHQGPDVSAVNGGTQVINIVTPNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGHLNANSNLNGQAASLILNEVVSRNPSFLLGQSEVFGIAAESVLSNPNGITCDGCGFINTSRSSLVVGNPLFENGQLKGYSTLNNTNLLSLGKNGLNTTGLLDLIAPRIDSRGKITAAEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQSGRIRIINTAEGSGVKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of truncated hemolysin A Q125S/Y134S from P. mirabilis at 1.5 Angstroms resolution
rcsb
molecule keywords Hemolysin
source organism Proteus mirabilis
molecule tags Toxin
total genus 82
structure length 234
sequence length 234
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05860 Haemagg_act haemagglutination activity domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4w8sA00
4W8QA 1IDJA 1OOCA 1X0CA 1IDKA 4YZQA 4XOPA 4W8RA 1PXZA 2NT9A 2X6WA 2NTBA 4OJOA 2O04A 1DBGA 4XNFA 2NT6A 1O8MA 3FY3A 4U49A 4EW9A 1OFMA 2VJIA 4XN3A 3LMWA 4XOTA 3T9GA 2PECA 1O88A 1QJVA 3ZPPA 3ZSCA 2VJJA 4XKWA 1O8JA 3KRGA 4XKVA 1K5CA 4Z03A 2VBKA 2INUA 2PYGA 4XR6A 3VMVA 3B8YA 1RWRA 4OJ5A 3UW0A 2QX3A 1O8FA 4XORA 1WMRA 2VBMA 3VSTA 3WWGA 1AIRA 4XQFA 4XMYA 1NHCA 4Z06A 1PLUA 5C1CA 2UVFA 5AMVA 1KTWA 1CZFA 2X6XA 3VMWA 3GRHA 1XG2A 2NZMA 2IQ7A 2O0WA 1O8HA 2X3HA 4XM3A 1BHEA 1DBOA 4XL9A 1JTAA 2QY1A 3GQ7A 2EWEA 2PYHA 4OJLA 1O8GA 4AVZA 3VSVA 2O0VA 1O8EA 4XLAA 4OZYA 1PE9A 2X85A 1IA5A 4OJ6A 4XONA 4U4BA 1OGMX 2NSPA 2X6YA 3B4NA 3B90A 4YZXA 1H80A 4PMHA 1RMGA 2NSTA 4W8SA 4XLEA 2NTPA 4YZAA 1JRGA 1BN8A 1KCDA 1O8IA 3GQ8A 3EQNA 1O8DA 1VBLA 4MR0A 1OFLA 1RU4A 3JURA 5C1EA 1O8LA 2BSPA 3SUCA 4W8TA 1KCCA 1O8KA 4HWVA 4YZ0A 4Z05A 4MXNA 4XLHA 2QXZA 1IB4A 1OGOX 2VBEA 2INVA 4OZZA 4URRA 3VSUA 4NK8A 4XLCA 4OJPA 1GQ8A 1EE6A 2O17A 4YEJA 4YELA 4XN0A 1QCXA 4I84A 4C2LA 2O1DA 2Z8GA 4XLFA 3EQOA 4NK6A 3GQ9A 2NTQA 2ODLA 1HG8A 2UVEA 3GQAA
chains in the Genus database with same CATH superfamily
2XTWA 4W8QA 1IDJA 1OOCA 1X0CA 1QQ1A 2BM6A 1IDKA 4YZQA 4XOPA 1QRBA 4W8RA 1PXZA 2NT9A 2X6WA 2NTBA 4OJOA 2O04A 1DBGA 2BM5A 1TYWA 5JMCB 4XNFA 4JRAC 2B0RA 2NT6A 1O8MA 3FY3A 4U49A 4EW9A 1OFMA 2VJIA 4XN3A 3LMWA 4XOTA 3T9GA 2PECA 1O88A 1QJVA 3ZPPA 3ZSCA 1KQ5A 2VJJA 1TYXA 1O8JA 4XKWA 4YCQA 3KRGA 1TYVA 4XKVA 1K5CA 4Z03A 2VBKA 2INUA 2QZAA 2PYGA 4XR6A 3JX8A 2BM4A 3VMVA 1DABA 1OFDA 2W7ZA 3B8YA 2G0YA 3SYJA 1RWRA 4OJ5A 3UW0A 2QX3A 2VFOA 4KH3A 3ML3A 2XTYA 3NB2A 2VFNA 1O8FA 4XORA 3RIQA 1EA0A 1WMRA 3DU1X 2VBMA 3VSTA 3WWGA 1AIRA 4XQFA 3PSZA 4XMYA 1CLWA 1QA1A 1NHCA 1QA2A 4Z06A 1PLUA 5C1CA 2UVFA 3LJYA 5AMVA 3N90A 1KTWA 1CZFA 2X6XA 3VMWA 3GRHA 3TH0A 1XG2A 2NZMA 4YC5A 2IQ7A 2O0WA 1O8HA 2X3HA 4XM3A 3AK5A 1BHEA 1DBOA 4OPWA 4XL9A 1JTAA 3SQVA 2QY1A 4YDTA 3GQ7A 1LLWA 2EWEA 2PYHA 3BH7B 4OJLA 1OFEA 1HF2A 1O8GA 3SZEA 3VSVA 2O0VA 4AVZA 1LM1A 1O8EA 4XLAA 3BH6B 3LYCA 4OZYA 1PE9A 2X85A 1IA5A 4OJ6A 4XONA 4U4BA 1OGMX 1QRCA 2NSPA 2X6YA 3B4NA 3B90A 1H80A 4PMHA 1RMGA 2NSTA 4W8SA 3H09A 2NTPA 2XT2A 4XLEA 4YZAA 5JLVC 1JRGA 1K4ZA 1BN8A 2IOUG 1KCDA 1O8IA 2BX6A 3GQ8A 1TSPA 2XT4A 3EQNA 1O8DA 1VBLA 2O6WA 3P4GA 4MR0A 1OFLA 2BM7A 1RU4A 3PSSA 3JURA 5C1EA 1O8LA 2BSPA 3SUCA 4W8TA 1KCCA 5DNSA 4V02C 1QA3A 2QYUA 2VFMA 1EZGA 1K8FA 4YFOA 1O8KA 4HWVA 4YZ0A 2V5IA 4Z05A 4MXNA 1LLZA 4XLHA 2QXZA 3SY2A 1IB4A 1OGOX 2VBEA 2INVA 4OZZA 4OM9A 4URRA 4YEIA 3VSUA 1TYUA 4NK8A 4XLCA 4OJPA 1GQ8A 1EE6A 2F3LA 3NAWA 1L1IA 2O17A 2XTXA 4YEJA 1WXRA 2VFPA 3PETA 4YELA 4XN0A 1QCXA 2J8IA 2YUHA 4I84A 4C2LA 2O1DA 2XC1A 2Z8GA 2J8KA 4XLFA 2VFQA 3EQOA 4NK6A 4YZXA 3GQ9A 2NTQA 2ODLA 1HG8A 3N6ZA 2UVEA 3GQAA
chains in the Genus database with same CATH topology
4W8QA 1IDJA 1OOCA 1X0CA 1IDKA 4YZQA 4XOPA 4W8RA 1PXZA 2NT9A 2X6WA 2NTBA 4OJOA 2O04A 1DBGA 4XNFA 2NT6A 1O8MA 3FY3A 4U49A 4EW9A 1OFMA 2VJIA 4XN3A 3LMWA 4XOTA 3T9GA 2PECA 1O88A 1QJVA 3ZPPA 3ZSCA 2VJJA 4XKWA 1O8JA 3KRGA 4XKVA 1K5CA 4Z03A 2VBKA 2INUA 2PYGA 4XR6A 3VMVA 3B8YA 1RWRA 4OJ5A 3UW0A 2QX3A 1O8FA 4XORA 1WMRA 2VBMA 3VSTA 3WWGA 1AIRA 4XQFA 4XMYA 1NHCA 4Z06A 1PLUA 5C1CA 2UVFA 5AMVA 1KTWA 1CZFA 2X6XA 3VMWA 3GRHA 1XG2A 2NZMA 2IQ7A 2O0WA 1O8HA 2X3HA 4XM3A 1BHEA 1DBOA 4XL9A 1JTAA 2QY1A 3GQ7A 2EWEA 2PYHA 4OJLA 1O8GA 4AVZA 3VSVA 2O0VA 1O8EA 4XLAA 4OZYA 1PE9A 2X85A 1IA5A 4OJ6A 4XONA 4U4BA 1OGMX 2NSPA 2X6YA 3B4NA 3B90A 4YZXA 1H80A 4PMHA 1RMGA 2NSTA 4W8SA 4XLEA 2NTPA 4YZAA 1JRGA 1BN8A 1KCDA 1O8IA 3GQ8A 3EQNA 1O8DA 1VBLA 4MR0A 1OFLA 1RU4A 3JURA 5C1EA 1O8LA 2BSPA 3SUCA 4W8TA 1KCCA 1O8KA 4HWVA 4YZ0A 4Z05A 4MXNA 4XLHA 2QXZA 1IB4A 1OGOX 2VBEA 2INVA 4OZZA 4URRA 3VSUA 4NK8A 4XLCA 4OJPA 1GQ8A 1EE6A 2O17A 4YEJA 4YELA 4XN0A 1QCXA 4I84A 4C2LA 2O1DA 2Z8GA 4XLFA 3EQOA 4NK6A 3GQ9A 2NTQA 2ODLA 1HG8A 2UVEA 3GQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8Q A;  1IDJ A;  1OOC A;  1X0C A;  1IDK A;  4YZQ A;  4XOP A;  4W8R A;  1PXZ A;  2NT9 A;  2X6W A;  2NTB A;  4OJO A;  2O04 A;  1DBG A;  4XNF A;  2NT6 A;  1O8M A;  3FY3 A;  4U49 A;  4EW9 A;  1OFM A;  2VJI A;  4XN3 A;  3LMW A;  4XOT A;  3T9G A;  2PEC A;  1O88 A;  1QJV A;  3ZPP A;  3ZSC A;  2VJJ A;  4XKW A;  1O8J A;  3KRG A;  4XKV A;  1K5C A;  4Z03 A;  2VBK A;  2INU A;  2PYG A;  4XR6 A;  3VMV A;  3B8Y A;  1RWR A;  4OJ5 A;  3UW0 A;  2QX3 A;  1O8F A;  4XOR A;  1WMR A;  2VBM A;  3VST A;  3WWG A;  1AIR A;  4XQF A;  4XMY A;  1NHC A;  4Z06 A;  1PLU A;  5C1C A;  2UVF A;  5AMV A;  1KTW A;  1CZF A;  2X6X A;  3VMW A;  3GRH A;  1XG2 A;  2NZM A;  2IQ7 A;  2O0W A;  1O8H A;  2X3H A;  4XM3 A;  1BHE A;  1DBO A;  4XL9 A;  1JTA A;  2QY1 A;  3GQ7 A;  2EWE A;  2PYH A;  4OJL A;  1O8G A;  4AVZ A;  3VSV A;  2O0V A;  1O8E A;  4XLA A;  4OZY A;  1PE9 A;  2X85 A;  1IA5 A;  4OJ6 A;  4XON A;  4U4B A;  1OGM X;  2NSP A;  2X6Y A;  3B4N A;  3B90 A;  4YZX A;  1H80 A;  4PMH A;  1RMG A;  2NST A;  4W8S A;  4XLE A;  2NTP A;  4YZA A;  1JRG A;  1BN8 A;  1KCD A;  1O8I A;  3GQ8 A;  3EQN A;  1O8D A;  1VBL A;  4MR0 A;  1OFL A;  1RU4 A;  3JUR A;  5C1E A;  1O8L A;  2BSP A;  3SUC A;  4W8T A;  1KCC A;  1O8K A;  4HWV A;  4YZ0 A;  4Z05 A;  4MXN A;  4XLH A;  2QXZ A;  1IB4 A;  1OGO X;  2VBE A;  2INV A;  4OZZ A;  4URR A;  3VSU A;  4NK8 A;  4XLC A;  4OJP A;  1GQ8 A;  1EE6 A;  2O17 A;  4YEJ A;  4YEL A;  4XN0 A;  1QCX A;  4I84 A;  4C2L A;  2O1D A;  2Z8G A;  4XLF A;  3EQO A;  4NK6 A;  3GQ9 A;  2NTQ A;  2ODL A;  1HG8 A;  2UVE A;  3GQA A; 
#chains in the Genus database with same CATH topology
 2XTW A;  4W8Q A;  1IDJ A;  1OOC A;  1X0C A;  1QQ1 A;  2BM6 A;  1IDK A;  4YZQ A;  4XOP A;  1QRB A;  4W8R A;  1PXZ A;  2NT9 A;  2X6W A;  2NTB A;  4OJO A;  2O04 A;  1DBG A;  2BM5 A;  1TYW A;  5JMC B;  4XNF A;  4JRA C;  2B0R A;  2NT6 A;  1O8M A;  3FY3 A;  4U49 A;  4EW9 A;  1OFM A;  2VJI A;  4XN3 A;  3LMW A;  4XOT A;  3T9G A;  2PEC A;  1O88 A;  1QJV A;  3ZPP A;  3ZSC A;  1KQ5 A;  2VJJ A;  1TYX A;  1O8J A;  4XKW A;  4YCQ A;  3KRG A;  1TYV A;  4XKV A;  1K5C A;  4Z03 A;  2VBK A;  2INU A;  2QZA A;  2PYG A;  4XR6 A;  3JX8 A;  2BM4 A;  3VMV A;  1DAB A;  1OFD A;  2W7Z A;  3B8Y A;  2G0Y A;  3SYJ A;  1RWR A;  4OJ5 A;  3UW0 A;  2QX3 A;  2VFO A;  4KH3 A;  3ML3 A;  2XTY A;  3NB2 A;  2VFN A;  1O8F A;  4XOR A;  3RIQ A;  1EA0 A;  1WMR A;  3DU1 X;  2VBM A;  3VST A;  3WWG A;  1AIR A;  4XQF A;  3PSZ A;  4XMY A;  1CLW A;  1QA1 A;  1NHC A;  1QA2 A;  4Z06 A;  1PLU A;  5C1C A;  2UVF A;  3LJY A;  5AMV A;  3N90 A;  1KTW A;  1CZF A;  2X6X A;  3VMW A;  3GRH A;  3TH0 A;  1XG2 A;  2NZM A;  4YC5 A;  2IQ7 A;  2O0W A;  1O8H A;  2X3H A;  4XM3 A;  3AK5 A;  1BHE A;  1DBO A;  4OPW A;  4XL9 A;  1JTA A;  3SQV A;  2QY1 A;  4YDT A;  3GQ7 A;  1LLW A;  2EWE A;  2PYH A;  3BH7 B;  4OJL A;  1OFE A;  1HF2 A;  1O8G A;  3SZE A;  3VSV A;  2O0V A;  4AVZ A;  1LM1 A;  1O8E A;  4XLA A;  3BH6 B;  3LYC A;  4OZY A;  1PE9 A;  2X85 A;  1IA5 A;  4OJ6 A;  4XON A;  4U4B A;  1OGM X;  1QRC A;  2NSP A;  2X6Y A;  3B4N A;  3B90 A;  1H80 A;  4PMH A;  1RMG A;  2NST A;  4W8S A;  3H09 A;  2NTP A;  2XT2 A;  4XLE A;  4YZA A;  5JLV C;  1JRG A;  1K4Z A;  1BN8 A;  2IOU G;  1KCD A;  1O8I A;  2BX6 A;  3GQ8 A;  1TSP A;  2XT4 A;  3EQN A;  1O8D A;  1VBL A;  2O6W A;  3P4G A;  4MR0 A;  1OFL A;  2BM7 A;  1RU4 A;  3PSS A;  3JUR A;  5C1E A;  1O8L A;  2BSP A;  3SUC A;  4W8T A;  1KCC A;  5DNS A;  4V02 C;  1QA3 A;  2QYU A;  2VFM A;  1EZG A;  1K8F A;  4YFO A;  1O8K A;  4HWV A;  4YZ0 A;  2V5I A;  4Z05 A;  4MXN A;  1LLZ A;  4XLH A;  2QXZ A;  3SY2 A;  1IB4 A;  1OGO X;  2VBE A;  2INV A;  4OZZ A;  4OM9 A;  4URR A;  4YEI A;  3VSU A;  1TYU A;  4NK8 A;  4XLC A;  4OJP A;  1GQ8 A;  1EE6 A;  2F3L A;  3NAW A;  1L1I A;  2O17 A;  2XTX A;  4YEJ A;  1WXR A;  2VFP A;  3PET A;  4YEL A;  4XN0 A;  1QCX A;  2J8I A;  2YUH A;  4I84 A;  4C2L A;  2O1D A;  2XC1 A;  2Z8G A;  2J8K A;  4XLF A;  2VFQ A;  3EQO A;  4NK6 A;  4YZX A;  3GQ9 A;  2NTQ A;  2ODL A;  1HG8 A;  3N6Z A;  2UVE A;  3GQA A; 
#chains in the Genus database with same CATH homology
 4W8Q A;  1IDJ A;  1OOC A;  1X0C A;  1IDK A;  4YZQ A;  4XOP A;  4W8R A;  1PXZ A;  2NT9 A;  2X6W A;  2NTB A;  4OJO A;  2O04 A;  1DBG A;  4XNF A;  2NT6 A;  1O8M A;  3FY3 A;  4U49 A;  4EW9 A;  1OFM A;  2VJI A;  4XN3 A;  3LMW A;  4XOT A;  3T9G A;  2PEC A;  1O88 A;  1QJV A;  3ZPP A;  3ZSC A;  2VJJ A;  4XKW A;  1O8J A;  3KRG A;  4XKV A;  1K5C A;  4Z03 A;  2VBK A;  2INU A;  2PYG A;  4XR6 A;  3VMV A;  3B8Y A;  1RWR A;  4OJ5 A;  3UW0 A;  2QX3 A;  1O8F A;  4XOR A;  1WMR A;  2VBM A;  3VST A;  3WWG A;  1AIR A;  4XQF A;  4XMY A;  1NHC A;  4Z06 A;  1PLU A;  5C1C A;  2UVF A;  5AMV A;  1KTW A;  1CZF A;  2X6X A;  3VMW A;  3GRH A;  1XG2 A;  2NZM A;  2IQ7 A;  2O0W A;  1O8H A;  2X3H A;  4XM3 A;  1BHE A;  1DBO A;  4XL9 A;  1JTA A;  2QY1 A;  3GQ7 A;  2EWE A;  2PYH A;  4OJL A;  1O8G A;  4AVZ A;  3VSV A;  2O0V A;  1O8E A;  4XLA A;  4OZY A;  1PE9 A;  2X85 A;  1IA5 A;  4OJ6 A;  4XON A;  4U4B A;  1OGM X;  2NSP A;  2X6Y A;  3B4N A;  3B90 A;  4YZX A;  1H80 A;  4PMH A;  1RMG A;  2NST A;  4W8S A;  4XLE A;  2NTP A;  4YZA A;  1JRG A;  1BN8 A;  1KCD A;  1O8I A;  3GQ8 A;  3EQN A;  1O8D A;  1VBL A;  4MR0 A;  1OFL A;  1RU4 A;  3JUR A;  5C1E A;  1O8L A;  2BSP A;  3SUC A;  4W8T A;  1KCC A;  1O8K A;  4HWV A;  4YZ0 A;  4Z05 A;  4MXN A;  4XLH A;  2QXZ A;  1IB4 A;  1OGO X;  2VBE A;  2INV A;  4OZZ A;  4URR A;  3VSU A;  4NK8 A;  4XLC A;  4OJP A;  1GQ8 A;  1EE6 A;  2O17 A;  4YEJ A;  4YEL A;  4XN0 A;  1QCX A;  4I84 A;  4C2L A;  2O1D A;  2Z8G A;  4XLF A;  3EQO A;  4NK6 A;  3GQ9 A;  2NTQ A;  2ODL A;  1HG8 A;  2UVE A;  3GQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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